diff --git a/DESCRIPTION b/DESCRIPTION index bec91b9ef14006b155c346c45a7ca5f006c15d3e..b74297a091a35f0b95e7cdf9fb52d8d70f1be502 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -15,5 +15,5 @@ Imports: linkcomm, parallel, rlist -RoxygenNote: 7.1.2 +RoxygenNote: 7.2.3 LinkingTo: Rcpp diff --git a/man/var.relations.mfi.Rd b/man/var.relations.mfi.Rd index 7757aa30fa9621f68854a37cbd5806c8efdd5111..94cf03664e1dead4d2665bf33d92cca609779634 100644 --- a/man/var.relations.mfi.Rd +++ b/man/var.relations.mfi.Rd @@ -19,7 +19,6 @@ var.relations.mfi( forest = NULL, save.memory = FALSE, case.weights = NULL, - min.var.p = 200, variables, candidates, p.t = 0.01, @@ -58,8 +57,6 @@ classification mode is used). For survival forests this is the time variable.} \item{case.weights}{Weights for sampling of training observations. Observations with larger weights will be selected with higher probability in the bootstrap (or subsampled) samples for the trees.} -\item{min.var.p}{minimum number of permuted variables used to determine p-value. Default is 200.} - \item{variables}{variable names (string) for which related variables should be searched for (has to be contained in allvariables)} \item{candidates}{vector of variable names (strings) that are candidates to be related to the variables (has to be contained in allvariables)} @@ -68,7 +65,7 @@ classification mode is used). For survival forests this is the time variable.} \item{select.rel}{set False if only relations should be calculated and no related variables should be selected.} -\item{method}{Method to compute p-values. Use "janitza" for the method by Janitza et al. (2016) or "permutation" to utilize importance values of permuted variables.} +\item{method}{Method to compute p-values. Use "janitza" for the method by Janitza et al. (2016) or "permutation" to utilize permuted relations.} } \value{ a list containing: diff --git a/man/var.select.mir.Rd b/man/var.select.mir.Rd index 42f04064a8a6d55db92cfd7d6dcdf039f74dac28..8932956f9d3748659179183766aace66757001ce 100644 --- a/man/var.select.mir.Rd +++ b/man/var.select.mir.Rd @@ -24,7 +24,7 @@ var.select.mir( case.weights = NULL, corr.rel = TRUE, t = 5, - method.rel = "janitza", + method.rel = "permutation", method.sel = "janitza", save.rel = TRUE )