From 64d6481e8dc08cbacb84ca7bc9f12f16e6f6832c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Florian=20G=C3=A4rber?= <florian.gaerber@uni-hamburg.de>
Date: Thu, 20 Jul 2023 11:53:06 +0200
Subject: [PATCH] Update manual with `devtools::document()`
---
DESCRIPTION | 2 +-
man/var.relations.mfi.Rd | 5 +----
man/var.select.mir.Rd | 2 +-
3 files changed, 3 insertions(+), 6 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index bec91b9..b74297a 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -15,5 +15,5 @@ Imports:
linkcomm,
parallel,
rlist
-RoxygenNote: 7.1.2
+RoxygenNote: 7.2.3
LinkingTo: Rcpp
diff --git a/man/var.relations.mfi.Rd b/man/var.relations.mfi.Rd
index 7757aa3..94cf036 100644
--- a/man/var.relations.mfi.Rd
+++ b/man/var.relations.mfi.Rd
@@ -19,7 +19,6 @@ var.relations.mfi(
forest = NULL,
save.memory = FALSE,
case.weights = NULL,
- min.var.p = 200,
variables,
candidates,
p.t = 0.01,
@@ -58,8 +57,6 @@ classification mode is used). For survival forests this is the time variable.}
\item{case.weights}{Weights for sampling of training observations. Observations with larger weights will be selected with higher probability in the bootstrap (or subsampled) samples for the trees.}
-\item{min.var.p}{minimum number of permuted variables used to determine p-value. Default is 200.}
-
\item{variables}{variable names (string) for which related variables should be searched for (has to be contained in allvariables)}
\item{candidates}{vector of variable names (strings) that are candidates to be related to the variables (has to be contained in allvariables)}
@@ -68,7 +65,7 @@ classification mode is used). For survival forests this is the time variable.}
\item{select.rel}{set False if only relations should be calculated and no related variables should be selected.}
-\item{method}{Method to compute p-values. Use "janitza" for the method by Janitza et al. (2016) or "permutation" to utilize importance values of permuted variables.}
+\item{method}{Method to compute p-values. Use "janitza" for the method by Janitza et al. (2016) or "permutation" to utilize permuted relations.}
}
\value{
a list containing:
diff --git a/man/var.select.mir.Rd b/man/var.select.mir.Rd
index 42f0406..8932956 100644
--- a/man/var.select.mir.Rd
+++ b/man/var.select.mir.Rd
@@ -24,7 +24,7 @@ var.select.mir(
case.weights = NULL,
corr.rel = TRUE,
t = 5,
- method.rel = "janitza",
+ method.rel = "permutation",
method.sel = "janitza",
save.rel = TRUE
)
--
GitLab