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Verified Commit 64d6481e authored by Gärber, Florian's avatar Gärber, Florian
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Update manual with `devtools::document()`

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...@@ -15,5 +15,5 @@ Imports: ...@@ -15,5 +15,5 @@ Imports:
linkcomm, linkcomm,
parallel, parallel,
rlist rlist
RoxygenNote: 7.1.2 RoxygenNote: 7.2.3
LinkingTo: Rcpp LinkingTo: Rcpp
...@@ -19,7 +19,6 @@ var.relations.mfi( ...@@ -19,7 +19,6 @@ var.relations.mfi(
forest = NULL, forest = NULL,
save.memory = FALSE, save.memory = FALSE,
case.weights = NULL, case.weights = NULL,
min.var.p = 200,
variables, variables,
candidates, candidates,
p.t = 0.01, p.t = 0.01,
...@@ -58,8 +57,6 @@ classification mode is used). For survival forests this is the time variable.} ...@@ -58,8 +57,6 @@ classification mode is used). For survival forests this is the time variable.}
\item{case.weights}{Weights for sampling of training observations. Observations with larger weights will be selected with higher probability in the bootstrap (or subsampled) samples for the trees.} \item{case.weights}{Weights for sampling of training observations. Observations with larger weights will be selected with higher probability in the bootstrap (or subsampled) samples for the trees.}
\item{min.var.p}{minimum number of permuted variables used to determine p-value. Default is 200.}
\item{variables}{variable names (string) for which related variables should be searched for (has to be contained in allvariables)} \item{variables}{variable names (string) for which related variables should be searched for (has to be contained in allvariables)}
\item{candidates}{vector of variable names (strings) that are candidates to be related to the variables (has to be contained in allvariables)} \item{candidates}{vector of variable names (strings) that are candidates to be related to the variables (has to be contained in allvariables)}
...@@ -68,7 +65,7 @@ classification mode is used). For survival forests this is the time variable.} ...@@ -68,7 +65,7 @@ classification mode is used). For survival forests this is the time variable.}
\item{select.rel}{set False if only relations should be calculated and no related variables should be selected.} \item{select.rel}{set False if only relations should be calculated and no related variables should be selected.}
\item{method}{Method to compute p-values. Use "janitza" for the method by Janitza et al. (2016) or "permutation" to utilize importance values of permuted variables.} \item{method}{Method to compute p-values. Use "janitza" for the method by Janitza et al. (2016) or "permutation" to utilize permuted relations.}
} }
\value{ \value{
a list containing: a list containing:
......
...@@ -24,7 +24,7 @@ var.select.mir( ...@@ -24,7 +24,7 @@ var.select.mir(
case.weights = NULL, case.weights = NULL,
corr.rel = TRUE, corr.rel = TRUE,
t = 5, t = 5,
method.rel = "janitza", method.rel = "permutation",
method.sel = "janitza", method.sel = "janitza",
save.rel = TRUE save.rel = TRUE
) )
......
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