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AG Seifert
SurrogateMinimalDepth
Commits
18380e7f
Unverified
Commit
18380e7f
authored
6 years ago
by
StephanSeifert
Committed by
GitHub
6 years ago
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Merge branch 'master' into SMD_0.1.9
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man/var.select.md.Rd
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man/var.select.md.Rd
man/var.select.smd.Rd
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man/var.select.smd.Rd
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man/var.select.md.Rd
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\alias{var.select.md}
\alias{var.select.md}
\title{Variable selection with Minimal Depth (MD)}
\title{Variable selection with Minimal Depth (MD)}
\usage{
\usage{
var.select.md(x = NULL, y = NULL, ntree = 500, type = "regression",
var.select.md(x = NULL, y = NULL, ntree = 500, type = "regression",
mtry = NULL, min.node.size = 1, num.threads = NULL, status = NULL,
mtry = NULL, min.node.size = 1, num.threads = NULL, status = NULL,
save.ranger = FALSE, create.forest = TRUE, forest = NULL)
save.ranger = FALSE, create.forest = TRUE, forest = NULL)
}
}
\arguments{
\arguments{
\item{x}{matrix or data.frame of predictor variables with variables in
\item{x}{matrix or data.frame of predictor variables with variables in
...
@@ -32,6 +35,7 @@ classification mode is used). For survival forests this is the time variable.}
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@@ -32,6 +35,7 @@ classification mode is used). For survival forests this is the time variable.}
\item{create.forest}{set FALSE if you want to analyze an existing forest. Default is TRUE.}
\item{create.forest}{set FALSE if you want to analyze an existing forest. Default is TRUE.}
\item{forest}{the random forest that should be analyzed if create.forest is set to FALSE. (x and y still have to be given to obtain variable names)}
\item{forest}{the random forest that should be analyzed if create.forest is set to FALSE. (x and y still have to be given to obtain variable names)}
}
}
\value{
\value{
List with the following components:
List with the following components:
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man/var.select.smd.Rd
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\alias{var.select.smd}
\alias{var.select.smd}
\title{Variable selection with Surrogate Minimal Depth (SMD) (MAIN FUNCTION)}
\title{Variable selection with Surrogate Minimal Depth (SMD) (MAIN FUNCTION)}
\usage{
\usage{
var.select.smd(x = NULL, y = NULL, ntree = 500, type = "regression",
var.select.smd(x = NULL, y = NULL, ntree = 500, type = "regression",
s = NULL, mtry = NULL, min.node.size = 1, num.threads = NULL,
s = NULL, mtry = NULL, min.node.size = 1, num.threads = NULL,
status = NULL, save.ranger = FALSE, create.forest = TRUE,
status = NULL, save.ranger = FALSE, create.forest = TRUE,
forest = NULL)
forest = NULL)
}
}
\arguments{
\arguments{
\item{x}{matrix or data.frame of predictor variables with variables in
\item{x}{matrix or data.frame of predictor variables with variables in
...
@@ -26,7 +28,7 @@ classification mode is used). For survival forests this is the time variable.}
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@@ -26,7 +28,7 @@ classification mode is used). For survival forests this is the time variable.}
\item{min.node.size}{minimal node size. Default is 1.}
\item{min.node.size}{minimal node size. Default is 1.}
\item{num.threads}{
n
umber of threads used for parallel execution. Default is number of CPUs available.}
\item{num.threads}{
N
umber of threads used for parallel execution. Default is number of CPUs available.}
\item{status}{status variable, only applicable to survival data. Use 1 for event and 0 for censoring.}
\item{status}{status variable, only applicable to survival data. Use 1 for event and 0 for censoring.}
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@@ -35,6 +37,7 @@ classification mode is used). For survival forests this is the time variable.}
...
@@ -35,6 +37,7 @@ classification mode is used). For survival forests this is the time variable.}
\item{create.forest}{set FALSE if you want to analyze an existing forest. Default is TRUE.}
\item{create.forest}{set FALSE if you want to analyze an existing forest. Default is TRUE.}
\item{forest}{the random forest that should be analyzed if create.forest is set to FALSE. (x and y still have to be given to obtain variable names)}
\item{forest}{the random forest that should be analyzed if create.forest is set to FALSE. (x and y still have to be given to obtain variable names)}
}
}
\value{
\value{
list with the following components:
list with the following components:
...
@@ -59,6 +62,8 @@ list with the following components:
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@@ -59,6 +62,8 @@ list with the following components:
}
}
\item ranger: ranger object.
\item ranger: ranger object.
\item ranger: ranger object
}
}
}
}
\description{
\description{
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