diff --git a/output/README.md b/output/README.md
deleted file mode 100644
index 418fdbecc82cdc61979325e9ca7a5e87604a3a7a..0000000000000000000000000000000000000000
--- a/output/README.md
+++ /dev/null
@@ -1,46 +0,0 @@
-# Projekt CiS-Projekt 2021/22
-
-Citation network made with **d3.js**
-
-## Usage
-### Input
-Json file **json\_text.json** in directory
-```json
-{
- "nodes": [
- {
- "name": <title: string>,
- "author": [<author1: string>, <author2: string>, ...],
- "year": <date: tring>,
- "journal": <journal: string>,
- "doi": <doi: string>,
- "group": <"input"/"height"/"depth">,
- "citations": <citation: int>
- }, ...
- ],
- "links": [
- {
- "source": <doi: string>,
- "target": <doi: string>
- }, ...
- ]
-}
-```
-
-### Display the Citation Network
-Starting a python web server:
-```sh
- cd <path to file> &&python3 -m http.server <port>
-```
-Access to the server:
-[http://0.0.0.0/:\<port\>](http://0.0.0.0/:<port>)
-
-## Files in Directory
-- **index.html**: webpage
-- **cn.js**: javascript code for force-directed graph, text elements and legend
-- **json_text.json**: example data
-
-
-## Authors
-- Katja Ehlers
-- Merle Stahl
\ No newline at end of file
diff --git a/output/graph/cn.js b/output/graph/cn.js
deleted file mode 100644
index 389935df5f1469ec2f152f0adc6995a72302fde7..0000000000000000000000000000000000000000
--- a/output/graph/cn.js
+++ /dev/null
@@ -1,561 +0,0 @@
-/**
-* creates a new zoom behavior
-*/
-var zoom = d3.zoom().on("zoom", handle_zoom);
-
-/**
-* creates svg object and associated attributes
-* applies the zoom behavior to svg
-*/
-var svg = d3.select("svg.graph")
- .call(zoom),
-width = svg.attr("width"),
-height = svg.attr("height"),
-perc;
-
-/**
-* scale functions that return y coordinate/color of node depending on group
-*/
-var color = d3.scaleOrdinal()
- .domain(["Citedby", "Input", "Reference"])
- .range([' #01d7c0', ' #8b90fe ', ' #a15eb2 ']),
-y_scale = d3.scaleOrdinal()
- .domain(["Citedby", "Input", "Reference"])
- .range([0, 200, 400]),
-to_remove;
-
-/**
-* creates node object and (default) radius
-*/
-var node,
-r = 10;
-
-/**
-* creates link object
-*/
-var link;
-
-/**
-* creates a background with a click functionality
-*/
-var rect = svg.append("rect")
- .attr("x", 0)
- .attr("y", 0)
- .attr("height", height)
- .attr("width", width)
- .style("fill", 'white')
- .on('click', click_rect);
-
-/**
-* creates svg object (legend) and associated attributes
-* transform
-*/
-var svg_legend = d3.select("svg.legendsvg"),
-legend_position = [65,95,125],
-arrow_legend_position = [0,25],
-arrow_group_names = ["citation","self-citation"],
-group_names = ["cited by","input","reference"],
-line_type = d3.scaleOrdinal()
- .domain(["line","dotted"])
- .range([("8,0"),("8,8")]),
-text_info = '',
-text_abstract = '';
-
-var legend = svg_legend.selectAll(".legend")
- .data(legend_position)
- .enter()
- .append("g")
- .attr("class","legend")
- .attr("transform", function(d,i) {return "translate(0," + d + ")"; });
-
-legend.append("text")
- .attr("x", 80)
- .attr("y", 0)
- .attr("dy", ".35em")
- .style("text-anchor", "start")
- .text(function(d,i) {return group_names[i]});
-
-legend.append("circle")
- .attr("r", r)
- .attr("cx",30-r)
- .style("fill", color);
-
-var legend_arrow = svg_legend.selectAll(".legendarr")
- .data(arrow_legend_position)
- .enter()
- .append("g")
- .attr("class","legendarr")
- .attr("transform", function(d) { return "translate(0," + d + ")"; });
-
-legend_arrow.append("line")
- .attr("x1", 10)
- .attr("x2", 50)
- .attr("y1", 10)
- .attr("y2", 10)
- .style("stroke-dasharray",line_type)
- .style("stroke", '#999')
- .style("stroke-width", "1px")
- .style('pointer-events', 'none')
- .attr('marker-end',update_marker('#999',this));
-
-legend_arrow.append("text")
- .attr("x", 80)
- .attr("y", 10)
- .attr("dy", ".35em")
- .style("text-anchor", "start")
- .text(function(d,i){return arrow_group_names[i]});
-
-/**
-* creates a new simulation
-* updates the positions of the links and nodes when the
- state of the layout has changed (simulation has advanced by a tick)
-*/
-var simulation = d3.forceSimulation()
- .force("link", d3.forceLink().id(function(d) {return d.doi;}).distance(50).strength(function(d) {
- if (d.group == "Input") {return 0;}
- else {return 5;}
- }))
- .force("collide", d3.forceCollide(function(d) {
- if (d.group == "Input") {return 70;}
- else {return 70;}
- }).strength(0.5))
- .force("charge", d3.forceManyBody().strength(0.001))
- .force("center", d3.forceCenter(width/2, height/2+20))
- .force("yscale", d3.forceY().strength(function(d) {
- if (d.group == "Input") {return 300;}
- else {return 200;}
- }).y(function(d) {return y_scale(d.group)}))
- .alpha(0.004)
- .on("end", zoom_to);
-
-/**
-* creates group element
-*/
-var g = svg.append("g")
- .attr("class", "everything")
-
-/**
-* loads JSON data and calls the update function
-*/
-d3.json("json_text.json").then(function(graph) {
- update(graph.links, graph.nodes);
-})
-
-var intervalId=window.setInterval(function(){
- d3.json("json_text.json").then(function(graph) {
- newjson_string=JSON.stringify(graph)
- var newjson = CryptoJS.MD5(newjson_string).toString();
- oldjson=localStorage.getItem("oldjson")
- if(newjson !== oldjson){
- localStorage.setItem("oldjson", newjson);
- window.location.reload()
- }
- })
-},5000);
-
-/**
-* calls update functions for links and nodes
-* adds the nodes, links and tick functionality to the simulation
-* @param {object} nodes - nodes
-* @param {object} links - links
-*/
-function update(links, nodes) {
- update_links(links);
- update_nodes(nodes);
-
- simulation
- .nodes(nodes)
- .on("tick", handle_tick);
- simulation.force("link")
- .links(links);
-
- link.attr('marker-end', function(d) {return update_marker("#999", d.target);})
- .style("stroke-dasharray",function(d){return self_citation(d.source,d.target)? ("8,8"): ("1,0")});
-}
-
-/**
-* initializes and shows links (edges)
-* @param {object} links - links
-*/
-function update_links(links) {
- link = g.append("g")
- .selectAll(".link")
- .data(links)
- .enter()
- .append("line")
- .style("stroke-width", "1px")
- .style("stroke", "#999")
- .attr("class", "link");
-}
-
-/**
-* initializes and shows nodes with circles, texts and a click functionality
-* creates a new drag behavior and applies it to the circles
-* @param {object} nodes - nodes
-*/
-function update_nodes(nodes) {
- node = g.selectAll(".node")
- .data(nodes)
- .enter()
- .append("g")
- .attr("class", "node")
- .call(d3.drag()
- .on("start", start_drag)
- .on("drag", dragged)
- );
-
- node.append("circle")
- .attr("class", "circle")
- .attr("r", function(d) {return 1.5*r+d.citations*0.05})
- .style("fill", function(d){ return color(d.group)})
- .on('click', click_node);
-
- node.append("text")
- .attr("class", "text")
- .style("font-size", "15px")
- .style('pointer-events', 'auto')
- .text(function (d) {const first_author=d.author[0].split(" ")
- return first_author[first_author.length-1];})
- .on('click', click_node);
-}
-
-/**
-* creates arrowhead and returns its url
-* @param {string} color - color of arrowhead
-* @param {string} target - target node
-*/
-function update_marker(color, target) {
- var radius = 1.5*r+target.citations*0.05;
- svg.append('defs').append('marker')
- .attr('id',color.replace("#", "")+radius)
- .attr('viewBox','-0 -5 10 10')
- .attr('refX',radius+9.5)
- .attr('refY',0)
- .attr('orient','auto')
- .attr('markerWidth',10)
- .attr('markerHeight',15)
- .attr('xoverflow','visible')
- .append('svg:path')
- .attr('d', 'M 0,-5 L 10 ,0 L 0,5')
- .attr('fill', color)
- .style('stroke','none');
- return "url(" + color + radius + ")";
-};
-
-/**
-* sets color of circle and its links to black and removes the previous highlights
-* displays overview info of node in textbox
-* @param {object} node - node
-*/
-function click_node(node) {
- d3.select(this.parentNode).raise();
- fix_nodes(node);
- if(to_remove){
- d3.select(to_remove).selectAll(".circle").style("stroke","none")
- }
- to_remove = this.parentNode;
- d3.select(this.parentNode).selectAll(".circle").style("stroke","black")
- mark_link(node)
- textbox_content(node)
- reset_button_highlight()
- highlight_button("overview")
-}
-
-/**
-* removes the highlights of the circles and their links
-*/
-function click_rect() {
- fix_nodes(node);
- d3.selectAll(".circle").style("stroke", "none")
- d3.selectAll(".link")
- .style("stroke", "#999")
- .attr('marker-end', function(d) {return update_marker('#999', d.target);})
- text_abstract='';
- text_info='';
- reset_button_highlight()
- document.getElementById('textbox').innerHTML = "Click node";
-}
-
-/**
-* returns true if journals have a common author (self-citation)
-* @param {object} source - node
-* @param {object} target - node
-*/
-function self_citation(source,target) {
- return source.author.some(item=>target.author.includes(item))
-}
-
-/**
-* sets color of link (line and arrowhead) to black if it is directly connected to node
-* and to grey otherwise
-* @param {object} node - node
-*/
-function mark_link(node) {
- d3.selectAll(".link")
- .style("stroke", function(o) {
- return is_link_for_node(node, o) ? "black" : "#DEDEDE";})
- .attr('marker-end', function(o) {
- return is_link_for_node(node, o) ? update_marker('#000000', o.target) : update_marker('#DEDEDE', o.target);})
-}
-
-/**
-* returns true if link is directly connected to node and false if it is not
-* @param {object} node - node
-* @param {object} link - link
-*/
-function is_link_for_node(node, link) {
- return link.source.index == node.index || link.target.index == node.index;
-}
-
-/**
-* saves text for overview and abstract of node
-* outputs node info to textbox
-* @param {object} node - node
-*/
-function textbox_content(node) {
- text_info = "Title:" + '</br>' + node.name +
- '</br>' +'</br>'+"Author:"+ '</br>' +node.author+'</br>'+'</br>'+"Date:"+'</br>'
- +node.year+'</br>'+'</br>'+"Journal:"+'</br>'+node.journal+'</br>'+'</br>'+"doi:"
- +'</br>'+'<a href="'+node.doi+ '">'+node.doi+'</a>'+'</br>'+'</br>'+"Citations:"
- +'</br>'+node.citations;
- text_abstract = node.abstract;
- document.getElementById('textbox').innerHTML = text_info;
-}
-
-/**
-* sets color of btn to dark gray
-* @param {object} btn - button
-*/
-function highlight_button(btn) {
- reset_button_highlight();
- document.getElementById(btn).style.background = "#CACACA";
-}
-
-/**
-* sets color of all buttons to default light gray
-*/
-function reset_button_highlight() {
- document.getElementById("overview").style.background = '';
- document.getElementById("abstract").style.background = '';
-}
-
-/**
-* displays abstract in textbox if a is true, overview text otherwise
-* @param {bool} a- bool
-*/
-function display_abstract(a) {
- if (text_abstract == '' && text_info == '') {
- document.getElementById('textbox').innerHTML="Click node";
- }
- else {
- if (a == true) {
- document.getElementById('textbox').innerHTML = text_abstract;
- }
- else {
- document.getElementById('textbox').innerHTML = text_info;
- }
- }
-}
-
-/**
-* updates the positions of the links and nodes
-*/
-function handle_tick() {
- link.attr("x1", function (d) {return d.source.x;})
- .attr("y1", function (d) {return d.source.y;})
- .attr("x2", function (d) {return d.target.x;})
- .attr("y2", function (d) {return d.target.y;});
- node.attr("transform", function (d) {return "translate(" + d.x + ", " + d.y + ")";});
-}
-
-/**
-* initializes the dragging of the node
-* @param {object} node - node
-*/
-function start_drag(node) {
- d3.select(this).raise();
- if (!d3.event.active)
- simulation.alphaTarget(0.3).restart()
- node.fx = node.x;
- node.fy = node.y;
- fix_nodes(node);
-}
-
-/**
-* applies the dragging to the node
-* @param {object} node - node
-*/
-function dragged(node) {
- node.fx = d3.event.x;
- node.fy = d3.event.y;
- fix_nodes(node);
-}
-
-/**
-* fix positions of all nodes except for the current node
-* @param {object} this_node - node
-*/
-function fix_nodes(this_node) {
- node.each(function(d) {
- if (this_node != d) {
- d.fx = d.x;
- d.fy = d.y;
- }
- });
-}
-
-/**
-* applies the transformation (zooming or dragging) to the g element
-*/
-function handle_zoom() {
- d3.select('g').attr("transform", d3.event.transform);
-}
-
-/**
-* transforms svg so that the zoom is adapted to the size of the graph
-*/
-function zoom_to() {
- node_bounds = d3.selectAll("svg.graph").node().getBBox();
- svg_bounds = d3.select("rect").node().getBBox();
-
- perc_x = width/(node_bounds.width+100);
- perc_y = height/(node_bounds.height+100);
- perc = d3.min([perc_x, perc_y])
-
- d3.select('svg')
- .call(zoom.scaleBy, perc);
-}
-
-/**
-* transforms svg so that the zoom and drag is reset
-*/
-function reset_view() {
- d3.select('svg')
- .call(zoom.scaleTo, 1)
- d3.select('svg')
- .call(zoom.translateTo, 0.5 * width, 0.5 * height);
- d3.select('svg')
- .call(zoom.scaleBy, perc);
-}
-
-/**
-* save svg as png
-*/
-function save_svg(){
- var svgString = get_svg_string(svg.node());
- svg_string_to_image(svgString, 2*width, 2*height, 'png', save); // passes Blob and filesize String to the callback
-
- function save( dataBlob, filesize ){
- saveAs(dataBlob, 'D3 vis exported to PNG.png'); // FileSaver.js function
- }
-};
-
-/**
-* generate svgString
-* @param {object} svgNode - node
-*/
-function get_svg_string(svgNode) {
- svgNode.setAttribute('xlink', 'http://www.w3.org/1999/xlink');
- var cssStyleText = get_css_styles(svgNode);
- append_css(cssStyleText, svgNode);
-
- var serializer = new XMLSerializer();
- var svgString = serializer.serializeToString(svgNode);
- svgString = svgString.replace(/(\w+)?:?xlink=/g, 'xmlns:xlink='); // Fix root xlink without namespace
- svgString = svgString.replace(/NS\d+:href/g, 'xlink:href'); // Safari NS namespace fix
-
- return svgString;
-
- function get_css_styles(parentElement) {
- var selectorTextArr = [];
-
- // Add Parent element Id and Classes to the list
- selectorTextArr.push('#' + parentElement.id);
- for (var c = 0; c < parentElement.classList.length; c++)
- if (!contains('.'+parentElement.classList[c], selectorTextArr))
- selectorTextArr.push('.'+parentElement.classList[c]);
-
- // Add Children element Ids and Classes to the list
- var nodes = parentElement.getElementsByTagName("*");
- for (var i = 0; i < nodes.length; i++) {
- var id = nodes[i].id;
- if (!contains('#'+id, selectorTextArr))
- selectorTextArr.push('#' + id);
-
- var classes = nodes[i].classList;
- for (var c = 0; c < classes.length; c++)
- if (!contains('.'+classes[c], selectorTextArr))
- selectorTextArr.push('.'+classes[c]);
- }
-
- // Extract CSS Rules
- var extractedCSSText = "";
- for (var i = 0; i < document.styleSheets.length; i++) {
- var s = document.styleSheets[i];
-
- try {
- if(!s.cssRules) continue;
- } catch(e) {
- if(e.name !== 'SecurityError') throw e; // for Firefox
- continue;
- }
-
- var cssRules = s.cssRules;
- for (var r = 0; r < cssRules.length; r++) {
- if (contains(cssRules[r].selectorText, selectorTextArr))
- extractedCSSText += cssRules[r].cssText;
- }
- }
-
-
- return extractedCSSText;
-
- function contains(str,arr) {
- return arr.indexOf(str) === -1 ? false : true;
- }
-
- }
-
- function append_css(cssText, element) {
- var styleElement = document.createElement("style");
- styleElement.setAttribute("type","text/css");
- styleElement.innerHTML = cssText;
- var refNode = element.hasChildNodes() ? element.children[0] : null;
- element.insertBefore(styleElement, refNode);
- }
-}
-
-/**
-* convert svgString to image and export it
-* @param {object} svgString - svgString
-* @param {object} width - width of image
-* @param {object} height - height of image
-* @param {object} format - format to save image in
-* @param {object} callback - callback function
-*/
-function svg_string_to_image( svgString, width, height, format, callback ) {
- var format = format ? format : 'png';
-
- var imgsrc = 'data:image/svg+xml;base64,'+ btoa(unescape(encodeURIComponent(svgString))); // Convert SVG string to data URL
-
- var canvas = document.createElement("canvas");
- var context = canvas.getContext("2d");
-
- canvas.width = width;
- canvas.height = height;
-
- var image = new Image();
- image.onload = function() {
- context.clearRect(0, 0, width, height);
- context.drawImage(image, 0, 0, width, height);
-
- canvas.toBlob(function(blob) {
- var filesize = Math.round(blob.length/1024) + ' KB';
- if (callback) callback(blob, filesize);
- });
-
- };
-
- image.src = imgsrc;
-}
-
diff --git a/output/graph/cn2.js b/output/graph/cn2.js
deleted file mode 100644
index dce918d24e11ba191318915544fd9c8179eb9414..0000000000000000000000000000000000000000
--- a/output/graph/cn2.js
+++ /dev/null
@@ -1,600 +0,0 @@
-/**
-* creates a new zoom behavior
-*/
-var zoom = d3.zoom().on("zoom", handle_zoom);
-
-/**
-* creates svg object and associated attributes
-* applies the zoom behavior to svg
-*/
-var svg = d3.select("svg.graph")
- .call(zoom),
-width = svg.attr("width"),
-height = svg.attr("height"),
-perc;
-
-/**
-* scale functions that return y coordinate/color of node depending on group
-*/
-var color = d3.scaleOrdinal()
- .domain(["Citedby", "Input", "Reference"])
- .range([' #01d7c0', ' #8b90fe ', ' #a15eb2 ']),
-y_scale = d3.scaleOrdinal()
- .domain(["Citedby", "Input", "Reference"])
- .range([0, 200, 400]),
-to_remove;
-
-/**
-* creates node object and (default) radius
-*/
-var node,
-r = 10;
-
-/**
-* creates link object
-*/
-var link;
-
-/**
-* creates a background with a click functionality
-*/
-var rect = svg.append("rect")
- .attr("x", 0)
- .attr("y", 0)
- .attr("height", height)
- .attr("width", width)
- .style("fill", 'white')
- .on('click', click_rect);
-
-/**
-* creates svg object (legend) and associated attributes
-* transform
-* mehr kommentare
-*/
-var svg_legend = d3.select("svg.legendsvg"),
-legend_position = [65,95,125],
-arrow_legend_position = [0,25],
-arrow_group_names = ["citation","self-citation"],
-group_names = ["cited by","input","reference"],
-line_type = d3.scaleOrdinal()
- .domain(["line","dotted"])
- .range([("8,0"),("8,8")]),
-text_info = '',
-text_abstract = '';
-
-var legend = svg_legend.selectAll(".legend")
- .data(legend_position)
- .enter()
- .append("g")
- .attr("class","legend")
- .attr("transform", function(d,i) {return "translate(0," + d + ")"; });
-
-legend.append("text")
- .attr("x", 80)
- .attr("y", 0)
- .attr("dy", ".35em")
- .style("text-anchor", "start")
- .text(function(d,i) {return group_names[i]});
-
-legend.append("circle")
- .attr("r", r)
- .attr("cx",30-r)
- .style("fill", color);
-
-var legend_arrow = svg_legend.selectAll(".legendarr")
- .data(arrow_legend_position)
- .enter()
- .append("g")
- .attr("class","legendarr")
- .attr("transform", function(d) { return "translate(0," + d + ")"; });
-
-legend_arrow.append("line")
- .attr("x1", 10)
- .attr("x2", 50)
- .attr("y1", 10)
- .attr("y2", 10)
- .style("stroke-dasharray",line_type)
- .style("stroke", '#999')
- .style("stroke-width", "1px")
- .style('pointer-events', 'none')
- .attr('marker-end',update_marker('#999',this));
-
-legend_arrow.append("text")
- .attr("x", 80)
- .attr("y", 10)
- .attr("dy", ".35em")
- .style("text-anchor", "start")
- .text(function(d,i){return arrow_group_names[i]});
-
-/**
-* creates a new simulation
-* updates the positions of the links and nodes when the
- state of the layout has changed (simulation has advanced by a tick)
-*/
-
-var simulation = d3.forceSimulation()
- .force("link", d3.forceLink().id(function(d) {return d.doi;}).distance(50).strength(function(d) {
- if (d.group == "Input") {return 0;}
- else {return 5;}
- }))
- .force("collide", d3.forceCollide(function(d) {
- if (d.group == "Input") {return 70;}
- else {return 75;}
- }).strength(1))
- .force("charge", d3.forceManyBody().strength(0.001))
- .force("center", d3.forceCenter(width/2, height/2+20))
- .alpha(0.004)
- .on("end", zoom_to);
-
-/**
-* creates group element
-*/
-var g = svg.append("g")
- .attr("class", "everything")
-
-/**
-* creates xAxis element
-*/
-var xAxis = d3.axisBottom()
- .tickFormat(function(d) {return d;})
- .ticks(10);;
-
-/**
-* draw xAxis
-*/
-var gX = svg.append("g")
- .attr("class", "axis axis--x")
- .attr("transform", "translate(0,25)")
- gX.append("text")
- .attr("y", 0)
- .attr("x", 80)
- .attr("text-anchor", "end")
- .attr("stroke", "black")
- .text("year");
-
-/**
-* loads JSON data and calls the update function
-*/
-d3.json("json_text.json").then(function(graph) {
- update(graph.links, graph.nodes);
-})
-
-var intervalId=window.setInterval(function(){
- d3.json("json_text.json").then(function(graph) {
- newjson_string=JSON.stringify(graph)
- var newjson = CryptoJS.MD5(newjson_string).toString();
- oldjson=localStorage.getItem("oldjson")
- if(newjson !== oldjson){
- localStorage.setItem("oldjson", newjson);
- window.location.reload()
- }
- })
-},5000);
-
-/**
-* calls update functions for links and nodes
-* adds the nodes, links and tick functionality to the simulation
-* @param {object} nodes - nodes
-* @param {object} links - links
-*/
-function update(links, nodes) {
- updateXAxis(nodes);
- update_links(links);
- update_nodes(nodes);
-
- simulation
- .nodes(nodes)
- .on("tick", handle_tick);
- simulation.force("link")
- .links(links);
-
- link.attr('marker-end', function(d) {return update_marker("#999", d.target);})
- .style("stroke-dasharray",function(d){return self_citation(d.source,d.target)? ("8,8"): ("1,0")});
-}
-
-/**
-* initializes and shows xAxis
-* @param {object} nodes - nodes
-*/
-function updateXAxis(nodes) {
- years = [];
- for (i = 0; i < nodes.length; i++) {
- years.push(parseInt((nodes[i]["year"]).split(" ")[2]));
- }
-
- xscale = d3.scaleLinear()
- .domain([d3.min(years)-1, d3.max(years)+1])
- .range([50, width-50])
-
- xAxis.scale(xscale);
- gX.call(xAxis);
-}
-
-/**
-* initializes and shows links (edges)
-* @param {object} links - links
-*/
-function update_links(links) {
- link = g.append("g")
- .selectAll(".link")
- .data(links)
- .enter()
- .append("line")
- .style("stroke-width", "1px")
- .style("stroke", "#999")
- .attr("class", "link");
-}
-
-/**
-* initializes and shows nodes with circles, texts and a click functionality
-* creates a new drag behavior and applies it to the circles
-* @param {object} nodes - nodes
-*/
-function update_nodes(nodes) {
- node = g.selectAll(".node")
- .data(nodes)
- .enter()
- .append("g")
- .attr("class", "node")
- .call(d3.drag()
- .on("start", start_drag)
- .on("drag", dragged)
- );
-
- node.append("circle")
- .attr("class", "circle")
- .attr("r", function(d) {return 1.5*r+d.citations*0.05})
- .style("fill", function(d){ return color(d.group)})
- .on('click', click_node);
-
- node.append("text")
- .attr("class", "text")
- .style("font-size", "15px")
- .style('pointer-events', 'auto')
- .text(function (d) {const first_author=d.author[0].split(" ")
- return first_author[first_author.length-1];})
- .on('click', click_node);
-}
-
-/**
-* creates arrowhead and returns its url
-* @param {string} color - color of arrowhead
-* @param {string} target - target node
-*/
-function update_marker(color, target) {
- var radius = 1.5*r+target.citations*0.05;
- svg.append('defs').append('marker')
- .attr('id',color.replace("#", "")+radius)
- .attr('viewBox','-0 -5 10 10')
- .attr('refX',radius+9.5)
- .attr('refY',0)
- .attr('orient','auto')
- .attr('markerWidth',10)
- .attr('markerHeight',15)
- .attr('xoverflow','visible')
- .append('svg:path')
- .attr('d', 'M 0,-5 L 10 ,0 L 0,5')
- .attr('fill', color)
- .style('stroke','none');
- return "url(" + color + radius + ")";
-};
-
-/**
-* sets color of circle and its links to black and removes the previous highlights
-* displays overview info of node in textbox
-* @param {object} node - node
-*/
-function click_node(node) {
- d3.select(this.parentNode).raise();
- fix_nodes(node);
- if(to_remove){
- d3.select(to_remove).selectAll(".circle").style("stroke","none")
- }
- to_remove = this.parentNode;
- d3.select(this.parentNode).selectAll(".circle").style("stroke","black")
- mark_link(node)
- textbox_content(node)
- reset_button_highlight()
- highlight_button("overview")
-}
-
-/**
-* removes the highlights of the circles and their links
-*/
-function click_rect() {
- fix_nodes(node);
- d3.selectAll(".circle").style("stroke", "none")
- d3.selectAll(".link")
- .style("stroke", "#999")
- .attr('marker-end', function(d) {return update_marker('#999', d.target);})
- text_abstract='';
- text_info='';
- reset_button_highlight()
- document.getElementById('textbox').innerHTML = "Click node";
-}
-
-/**
-* returns true if journals have a common author (self-citation)
-* @param {object} source - node
-* @param {object} target - node
-*/
-function self_citation(source,target) {
- return source.author.some(item=>target.author.includes(item))
-}
-
-/**
-* sets color of link (line and arrowhead) to black if it is directly connected to node
-* and to grey otherwise
-* @param {object} node - node
-*/
-function mark_link(node) {
- d3.selectAll(".link")
- .style("stroke", function(o) {
- return is_link_for_node(node, o) ? "black" : "#DEDEDE";})
- .attr('marker-end', function(o) {
- return is_link_for_node(node, o) ? update_marker('#000000', o.target) : update_marker("#DEDEDE", o.target);})
-}
-
-/**
-* returns true if link is directly connected to node and false if it is not
-* @param {object} node - node
-* @param {object} link - link
-*/
-function is_link_for_node(node, link) {
- return link.source.index == node.index || link.target.index == node.index;
-}
-
-/**
-* saves text for overview and abstract of node
-* outputs node info to textbox
-* @param {object} node - node
-*/
-function textbox_content(node) {
- text_info = "Title:" + '</br>' + node.name +
- '</br>' +'</br>'+"Author:"+ '</br>' +node.author+'</br>'+'</br>'+"Date:"+'</br>'
- +node.year+'</br>'+'</br>'+"Journal:"+'</br>'+node.journal+'</br>'+'</br>'+"doi:"
- +'</br>'+'<a href="'+node.doi+ '">'+node.doi+'</a>'+'</br>'+'</br>'+"Citations:"
- +'</br>'+node.citations;
- text_abstract = node.abstract;
- document.getElementById('textbox').innerHTML = text_info;
-}
-
-/**
-* sets color of btn to dark gray
-* @param {object} btn - button
-*/
-function highlight_button(btn) {
- reset_button_highlight();
- document.getElementById(btn).style.background = "#CACACA";
-}
-
-/**
-* sets color of all buttons to default light gray
-*/
-function reset_button_highlight() {
- document.getElementById("overview").style.background = '';
- document.getElementById("abstract").style.background = '';
-}
-
-/**
-* displays abstract in textbox if a is true, overview text otherwise
-* @param {bool} a- bool
-*/
-function display_abstract(a) {
- if (text_abstract == '' && text_info == '') {
- document.getElementById('textbox').innerHTML="Click node";
- }
- else {
- if (a == true) {
- document.getElementById('textbox').innerHTML = text_abstract;
- }
- else {
- document.getElementById('textbox').innerHTML = text_info;
- }
- }
-}
-
-/**
-* updates the positions of the links and nodes
-*/
-function handle_tick() {
- link.attr("x1", function (d) {return xscale(parseInt((d.source.year).split(" ")[2]));})
- .attr("y1", function (d) {return d.source.y;})
- .attr("x2", function (d) {return xscale(parseInt((d.target.year).split(" ")[2]));})
- .attr("y2", function (d) {return d.target.y;});
- node.attr("transform", function (d) {return "translate(" + xscale(parseInt((d.year).split(" ")[2])) + ", " + d.y + ")";});
-}
-
-/**
-* initializes the dragging of the node
-* @param {object} node - node
-*/
-function start_drag(node) {
- d3.select(this).raise();
- if (!d3.event.active)
- simulation.alphaTarget(0.3).restart()
- //node.fx = node.x;
- node.fy = node.y;
- fix_nodes(node);
-}
-
-/**
-* applies the dragging to the node
-* @param {object} node - node
-*/
-function dragged(node) {
- //node.fx = d3.event.x;
- node.fy = d3.event.y;
- fix_nodes(node);
-}
-
-/**
-* fix positions of all nodes except for the current node
-* @param {object} this_node - node
-*/
-function fix_nodes(this_node) {
- node.each(function(d) {
- if (this_node != d) {
- d.fx = d.x;
- d.fy = d.y;
- }
- });
-}
-
-/**
-* applies the transformation (zooming or dragging) to the g element
-*/
-function handle_zoom() {
- d3.select('g').attr("transform", d3.event.transform);
- var new_xScale = d3.event.transform.rescaleX(xscale)
- gX.call(xAxis.scale(new_xScale));
-}
-
-/**
-* transforms svg so that the zoom is adapted to the size of the graph
-*/
-function zoom_to() {
- node_bounds = d3.selectAll("svg.graph").node().getBBox();
- svg_bounds = d3.select("rect").node().getBBox();
-
- perc_x = width/(node_bounds.width+100);
- perc_y = height/(node_bounds.height+100);
- perc = d3.min([perc_x, perc_y])
-
- d3.select('svg')
- .call(zoom.scaleBy, perc);
-}
-
-/**
-* transforms svg so that the zoom and drag is reset
-*/
-function reset_view() {
- d3.select('svg')
- .call(zoom.scaleTo, 1)
- d3.select('svg')
- .call(zoom.translateTo, 0.5 * width, 0.5 * height);
- d3.select('svg')
- .call(zoom.scaleBy, perc);
-}
-
-/**
-* save svg as png
-*/
-function save_svg(){
- var svgString = get_svg_string(svg.node());
- svg_string_to_image(svgString, 2*width, 2*height, 'png', save); // passes Blob and filesize String to the callback
-
- function save( dataBlob, filesize ){
- saveAs(dataBlob, 'D3 vis exported to PNG.png'); // FileSaver.js function
- }
-};
-
-/**
-* generate svgString
-* @param {object} svgNode - node
-*/
-function get_svg_string(svgNode) {
- svgNode.setAttribute('xlink', 'http://www.w3.org/1999/xlink');
- var cssStyleText = get_css_styles(svgNode);
- append_css(cssStyleText, svgNode);
-
- var serializer = new XMLSerializer();
- var svgString = serializer.serializeToString(svgNode);
- svgString = svgString.replace(/(\w+)?:?xlink=/g, 'xmlns:xlink='); // Fix root xlink without namespace
- svgString = svgString.replace(/NS\d+:href/g, 'xlink:href'); // Safari NS namespace fix
-
- return svgString;
-
- function get_css_styles(parentElement) {
- var selectorTextArr = [];
-
- // Add Parent element Id and Classes to the list
- selectorTextArr.push('#' + parentElement.id);
- for (var c = 0; c < parentElement.classList.length; c++)
- if (!contains('.'+parentElement.classList[c], selectorTextArr))
- selectorTextArr.push('.'+parentElement.classList[c]);
-
- // Add Children element Ids and Classes to the list
- var nodes = parentElement.getElementsByTagName("*");
- for (var i = 0; i < nodes.length; i++) {
- var id = nodes[i].id;
- if (!contains('#'+id, selectorTextArr))
- selectorTextArr.push('#' + id);
-
- var classes = nodes[i].classList;
- for (var c = 0; c < classes.length; c++)
- if (!contains('.'+classes[c], selectorTextArr))
- selectorTextArr.push('.'+classes[c]);
- }
-
- // Extract CSS Rules
- var extractedCSSText = "";
- for (var i = 0; i < document.styleSheets.length; i++) {
- var s = document.styleSheets[i];
-
- try {
- if(!s.cssRules) continue;
- } catch(e) {
- if(e.name !== 'SecurityError') throw e; // for Firefox
- continue;
- }
-
- var cssRules = s.cssRules;
- for (var r = 0; r < cssRules.length; r++) {
- if (contains(cssRules[r].selectorText, selectorTextArr))
- extractedCSSText += cssRules[r].cssText;
- }
- }
-
-
- return extractedCSSText;
-
- function contains(str,arr) {
- return arr.indexOf(str) === -1 ? false : true;
- }
-
- }
-
- function append_css(cssText, element) {
- var styleElement = document.createElement("style");
- styleElement.setAttribute("type","text/css");
- styleElement.innerHTML = cssText;
- var refNode = element.hasChildNodes() ? element.children[0] : null;
- element.insertBefore(styleElement, refNode);
- }
-}
-
-/**
-* convert svgString to image and export it
-* @param {object} svgString - svgString
-* @param {object} width - width of image
-* @param {object} height - height of image
-* @param {object} format - format to save image in
-* @param {object} callback - callback function
-*/
-function svg_string_to_image( svgString, width, height, format, callback ) {
- var format = format ? format : 'png';
-
- var imgsrc = 'data:image/svg+xml;base64,'+ btoa(unescape(encodeURIComponent(svgString))); // Convert SVG string to data URL
-
- var canvas = document.createElement("canvas");
- var context = canvas.getContext("2d");
-
- canvas.width = width;
- canvas.height = height;
-
- var image = new Image();
- image.onload = function() {
- context.clearRect(0, 0, width, height);
- context.drawImage(image, 0, 0, width, height);
-
- canvas.toBlob(function(blob) {
- var filesize = Math.round(blob.length/1024) + ' KB';
- if (callback) callback(blob, filesize);
- });
-
- };
-
- image.src = imgsrc;
-}
-
diff --git a/output/graph/index.html b/output/graph/index.html
deleted file mode 100644
index 374abe283271574e67bd8d73e3691ef35b9e782d..0000000000000000000000000000000000000000
--- a/output/graph/index.html
+++ /dev/null
@@ -1,172 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
-<head>
- <meta charset="utf-8">
-
- <!-- style specifications for button and div elements -->
- <style type="text/css">
- button {
- width: 100px;
- height:20px;
- display: flex;
- justify-content: center;
- position: absolute;
- left: 455px;
- top: 575px;
- transition-duration: 0.4s;
- border-radius:3px;
- border:1px solid #909090;
- }
-
- button.display{
- width: 120px;
- top: 0px;
- margin-left: 100px;
- }
-
- .button:hover {
- background-color: #CACACA;
- }
-
- button.resetZoom {
- margin-left: 110px;
- }
-
- button.save {
- margin-left: 220px;
- }
-
- button.abstract {
- width:146px;
- position:absolute;
- top: 181px;
- left: 1114px;
- border-radius:0;
- border:1px solid #909090;
- }
-
- button.overview {
- width:147px;
- position:absolute;
- display:inline-block;
- top: 181px;
- left: 968px;
- border-radius:0;
- border:1px solid #909090;
- }
-
- div.legendbox {
- width:270px;
- height:170px;
- padding: 10px;
- /*border: 1px solid #999;*/
- position: absolute;
- top: 10px;
- left: 968px;
- display: inline-block;
- margin: 0;
- }
-
- div.textbox {
- width:270px;
- min-height:200px;
- max-height:370px;
- padding: 10px;
- border: 1px solid #999;
- position: absolute;
- top: 200px;
- left: 968px;
- display: inline-block;
- overflow-y: scroll;
- margin: 0;
- }
- </style>
-</head>
-
-<body>
- <button id="change_graph" class="display" onclick="display()">display timeline</button>
-
- <!-- graph -->
- <svg class="graph" width="960" height="560"></svg>
- <p id="oldjson"></p>
-
- <!-- legend -->
- <div class="legendbox"><svg class="legendsvg"></svg></div>
-
- <!-- textbox -->
- <div class="textbox" id="textbox">Click node</div>
- <button id="overview" class="overview" onclick='display_abstract(false), highlight_button("overview")'>Overview</button>
- <button id="abstract" class="abstract" onclick='display_abstract(true), highlight_button("abstract")'>Abstract</button>
-
- <!-- buttons -->
- <button onclick="location.reload()">Reload Graph</button>
- <button class="resetZoom" onclick="reset_view()">Reset View</button>
- <button class="save" onclick="save_svg()">Save</button>
-
- <!-- D3 (version 5) -->
- <script src="https://d3js.org/d3.v5.min.js"></script>
-
- <!-- scripts to save svg element as png -->
- <script src="https://cdn.rawgit.com/eligrey/canvas-toBlob.js/f1a01896135ab378aa5c0118eadd81da55e698d8/canvas-toBlob.js"></script>
- <script src="https://cdn.rawgit.com/eligrey/FileSaver.js/e9d941381475b5df8b7d7691013401e171014e89/FileSaver.min.js"></script>
-
- <script src="https://cdnjs.cloudflare.com/ajax/libs/crypto-js/4.0.0/core.min.js"></script>
- <script src="https://cdnjs.cloudflare.com/ajax/libs/crypto-js/3.1.9-1/md5.js"></script>
-
- <script type="text/javascript" >
- if(window.location.hash=='#default'){
- document.getElementById("change_graph").innerHTML = 'display timeline';
- load_default();
-
- }
- else if(window.location.hash=='#time'){
- document.getElementById("change_graph").innerHTML = 'display default';
- load_time();
-
- }
- else if(window.location.hash==''){
- window.location.hash = 'default';
- document.getElementById("change_graph").innerHTML = 'display timeline';
- load_default();
- }
- function display(){
- if(window.location.hash=='#time'){
- display_default();
- }
- else if(window.location.hash=='#default'){
- display_time();
- }
- }
- function display_default(){
- window.location.hash = 'default';
- window.location.reload();
- }
- function display_time(){
- window.location.hash = 'time';
- window.location.reload();
-
- }
- function load_default(){
- var htmlHeader = document.getElementsByTagName("head")[0];
- var myScript = document.createElement('script');
- myScript.type = 'text/javascript';
- myScript.src = 'cn.js';
- myScript.id='abc';
- htmlHeader.appendChild(myScript);
- }
- function load_time(){
- var htmlHeader = document.getElementsByTagName("head")[0];
- var myScript = document.createElement('script');
- myScript.type = 'text/javascript';
- myScript.src = 'cn2.js';
- myScript.id='abc';
- htmlHeader.appendChild(myScript);
-
- }
- </script>
-
- <!-- javascript for force-directed graph
- <script type="text/javascript" id="cn" src="cn.js"></script> -->
-
-</body>
-</html>
\ No newline at end of file
diff --git a/output/graph/json_text.json b/output/graph/json_text.json
deleted file mode 100644
index eb3c1d3d7ab6d4d770686f9170bfae697b7d2ca7..0000000000000000000000000000000000000000
--- a/output/graph/json_text.json
+++ /dev/null
@@ -1,819 +0,0 @@
-{
- "nodes": [
- {
- "name": "Comparing Molecular Patterns Using the Example of SMARTS: Applications and Filter Collection Analysis",
- "author": [
- "Emanuel S. R. Ehmki",
- "Robert Schmidt",
- "Farina Ohm",
- "Matthias Rarey"
- ],
- "year": "May 24, 2019",
- "journal": "Journal of Chemical Information and Modeling",
- "doi": "https://doi.org/10.1021/acs.jcim.9b00249",
- "group": "input",
- "citations": 5
- },
- {
- "name": "Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems",
- "author": [
- "John A. Keith",
- "Valentin Vassilev-Galindo",
- "Bingqing Cheng",
- "Stefan Chmiela",
- "Michael Gastegger",
- "Klaus-Robert M\u00fcller",
- "Alexandre Tkatchenko"
- ],
- "year": "July 7, 2021",
- "journal": "Chem. Rev.",
- "doi": "https://doi.org/10.1021/acs.chemrev.1c00107",
- "group": "height",
- "citations": 1
- },
- {
- "name": "Disconnected Maximum Common Substructures under Constraints",
- "author": [
- "Robert Schmidt",
- "Florian Krull",
- "Anna Lina Heinzke",
- "Matthias Rarey"
- ],
- "year": "December 16, 2020",
- "journal": "Journal of Chemical Information and Modeling",
- "doi": "https://doi.org/10.1021/acs.jcim.0c00741",
- "group": "height",
- "citations": 0
- },
- {
- "name": "Evolution of Novartis\u2019 Small Molecule Screening Deck Design",
- "author": [
- "Ansgar Schuffenhauer",
- "Nadine Schneider",
- "Samuel Hintermann",
- "Douglas Auld",
- "Jutta Blank",
- "Simona Cotesta",
- "Caroline Engeloch",
- "Nikolas Fechner",
- "Christoph Gaul",
- "Jerome Giovannoni",
- "Johanna Jansen",
- "John Joslin",
- "Philipp Krastel",
- "Eugen Lounkine",
- "John Manchester",
- "Lauren G. Monovich",
- "Anna Paola Pelliccioli",
- "Manuel Schwarze",
- "Michael D. Shultz",
- "Nikolaus Stiefl",
- "Daniel K. Baeschlin"
- ],
- "year": "November 3, 2020",
- "journal": "Journal of Medicinal Chemistry",
- "doi": "https://doi.org/10.1021/acs.jmedchem.0c01332",
- "group": "height",
- "citations": 8
- },
- {
- "name": "Comparing Molecular Patterns Using the Example of SMARTS: Theory and Algorithms",
- "author": [
- "Robert Schmidt",
- "Emanuel S. R. Ehmki",
- "Farina Ohm",
- "Hans-Christian Ehrlich",
- "Andriy Mashychev",
- "Matthias Rarey"
- ],
- "year": "May 23, 2019",
- "journal": "Journal of Chemical Information and Modeling",
- "doi": "https://doi.org/10.1021/acs.jcim.9b00250",
- "group": "height",
- "citations": 12
- },
- {
- "name": "AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings",
- "author": [
- "Jerome Eberhardt",
- "Diogo Santos-Martins",
- "Andreas F. Tillack",
- "Stefano Forli"
- ],
- "year": "July 19, 2021",
- "journal": "Journal of Chemical Information and Modeling",
- "doi": "https://doi.org/10.1021/acs.jcim.1c00203",
- "group": "input",
- "citations": 1
- },
- {
- "name": "Accelerating AutoDock4 with GPUs and Gradient-Based Local Search",
- "author": [
- "Diogo Santos-Martins",
- "Leonardo Solis-Vasquez",
- "Andreas F Tillack",
- "Michel F Sanner",
- "Andreas Koch",
- "Stefano Forli"
- ],
- "year": "January 6, 2021",
- "journal": "Journal of Chemical Theory and Computation",
- "doi": "https://doi.org/10.1021/acs.jctc.0c01006",
- "group": "depth",
- "citations": 14
- },
- {
- "name": "Docking Flexible Cyclic Peptides with AutoDock CrankPep",
- "author": [
- "Yuqi Zhang",
- "Michel F. Sanner"
- ],
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- "target": "https://doi.org/10.1021/jm300687e"
- },
- {
- "source": "https://doi.org/10.1021/acs.jcim.9b00778",
- "target": "https://doi.org/10.1021/acs.jcim.8b00312"
- },
- {
- "source": "https://doi.org/10.1021/acs.jctc.0c01006",
- "target": "https://doi.org/10.1021/acs.jcim.9b00778"
- },
- {
- "source": "https://doi.org/10.1021/acs.jctc.0c01006",
- "target": "https://doi.org/10.1021/ci049714+"
- },
- {
- "source": "https://doi.org/10.1021/ci7004498",
- "target": "https://doi.org/10.1021/jm020155c"
- },
- {
- "source": "https://doi.org/10.1021/acsmedchemlett.1c00251",
- "target": "https://doi.org/10.1021/ci025599w"
- },
- {
- "source": "https://doi.org/10.1021/acs.jmedchem.0c01332",
- "target": "https://doi.org/10.1021/ci025599w"
- }
- ]
-}
\ No newline at end of file
diff --git a/ui_programm_fragmente/input_to_checklist.py b/ui_programm_fragmente/input_to_checklist.py
deleted file mode 100644
index 3c00ed4c23c7acf914c02af576fec41d8ba2efc7..0000000000000000000000000000000000000000
--- a/ui_programm_fragmente/input_to_checklist.py
+++ /dev/null
@@ -1,160 +0,0 @@
-import dash
-from dash import dcc
-from dash import html
-from dash import callback_context
-from dash.dependencies import Input, Output, State
-from dash.exceptions import PreventUpdate
-from input.interface import InputInterface
-import input.publication
-
-app = dash.Dash(__name__)
-
-additional_options = ['Update Automatically']
-
-app.layout = html.Div([
- # Layer 0: For the Header and Help Function(s)
- html.Div([
- html.Button(id='show-info',children='Show Info',n_clicks=0),
- html.Div(id='info-box')
- ]),
- # Layer 1: For all mandatory Inputs
- html.Div([
- "Input: ",
- dcc.Input(id='input-string', value='', type='text',debounce=True),
- dcc.Input(id='forward-depth',value='1',type='number',min='1',max='10'),
- dcc.Input(id='backward-depth',value='1',type='number',min='1',max='10')
- ]),
- # Layer 2: For the checklist, Remove-/Start-Buttons and input-error-message
- html.Div([
- dcc.Checklist(id='input-checklist',options=[],labelStyle = dict(display='block'),value=[]),
- html.Div(id='input-err',style={'color':'red'}),
- html.Button(id='clear-all-button',children='Clear All'),
- html.Button(id='clear-selected-button',children='Clear Selected'),
- html.Button(id='start-button',children='Generate Graph')
- ]),
- # Layer 3: For additional Options (e.g. Topological Sort)
- html.Div([
- html.H4('Additional Options'),
- dcc.Checklist(id='additional-options',
- options=[{'label':k,'value':k} for k in additional_options],
- value=[])
- ]),
- # Layer 4: For the Graph
- html.Div([
- html.Div(id='test-output')
- ])
-])
-
-'''
-Most important callback function. Updates the checklist that holds all inputs.
-input-string is required as Output to clear the input box after each input
-'''
-@app.callback(
- Output('input-checklist','options'),
- Output('input-checklist','value'),
- Output('input-string','value'),
- Output('input-err','children'),
- Input('input-string','value'),
- Input('clear-all-button','n_clicks'),
- Input('clear-selected-button','n_clicks'),
- State('input-checklist','options'),
- State('input-checklist','value')
-)
-def update_input_checklist(input_value,btn1,btn2,all_inputs,selected_inputs):
- '''
- :param input_value: given by dcc.Input
- :type input_value: string
- :param btn1: signals pressing of clear-all-button
- :param btn2: signals pressing of clear-selected-button
- :param all_inputs: all labels and values from the checklist,
- regardless if they have been checked or not
- :type all_inputs: list of dictionaries with 2 entries each
- :param selected_inputs: values of all checked elements
- :type selected_inputs: list of strings
- '''
- changed_id = [p['prop_id'] for p in callback_context.triggered][0]
- # if clear-all-button was pressed:
- if 'clear-all-button' in changed_id:
- return list(),list(),'',''
- # if clear-selected-button was pressed:
- if 'clear-selected-button' in changed_id:
- all_inputs = [i for i in all_inputs if i['value'] not in selected_inputs]
- return all_inputs,list(),'',''
- # when the programm is first started:
- if input_value == '':
- app.layout['input-checklist'].options.clear()
- return list(),list(),'',''
- # when a new element is added via dcc.Input
- if 'input-string' in changed_id:
- options = all_inputs
- currValues = [x['value'] for x in options]
- if input_value not in currValues:
- try:
- i = InputInterface()
- pub = i.get_pub_light(input_value)
- except Exception as err:
- return options,selected_inputs,'','{}'.format(err)
- rep_str = pub.contributors[0] + ',' + pub.journal + ',' + pub.publication_date
- options.append({'label':rep_str, 'value':input_value})
- return options,selected_inputs,'',''
-
-'''
-This callback shows and hides the (first) help-box
-'''
-@app.callback(
- Output('info-box','children'),
- Input('show-info','n_clicks')
-)
-def show_hide_info_box(n_clicks):
- if n_clicks % 2 == 0:
- return ''
- else:
- return 'Hier koennte Ihre Werbung stehen'
-
-'''
-Basic structure for a callback that generates an output
-'''
-@app.callback(
- Output('test-output','children'),
- Input('start-button','n_clicks'),
- Input('input-checklist','options'),
- Input('input-checklist','value'),
- Input('forward-depth','value'),
- Input('backward-depth','value'),
- State('additional-options','value')
-)
-def generate_output(n_clicks,all_inputs,selected_inputs,
- forward_depth,backward_depth,additional_options):
- '''
- :param n_clicks: how often has Generate Graph been clicked
- :type n_clicks: int
- :param all_inputs: all labels and values from the checklist,
- regardless if they have been checked or not
- :type all_inputs: list of dictionaries with 2 entries each
- :param selected_inputs: values of all checked elements
- :type selected_inputs: list of strings
- :param forward_depth: forward recursion depth
- :type forward_depth: unsigned int
- :param backward_depth: backward recursion depth
- :type backward_depth: unsigned int
- :param additional_options: value of all selected additional options
- :type additional_options: list of strings
- '''
- changed_id = [p['prop_id'] for p in callback_context.triggered][0]
- if n_clicks is None:
- raise PreventUpdate
- elif 'Update Automatically' in additional_options \
- or 'start-button' in changed_id:
- s = ''
- for i in range(len(all_inputs)):
- x = all_inputs[i]['value']
- if x in selected_inputs:
- s += x*(abs(int(forward_depth)-int(backward_depth)))
- else:
- s += x*(int(forward_depth)+int(backward_depth))
- return s
- else:
- raise PreventUpdate
-
-if __name__ == '__main__':
- app.run_server(debug=True)
diff --git a/ui_programm_fragmente/upload_to_checklist.py b/ui_programm_fragmente/upload_to_checklist.py
deleted file mode 100644
index 9a094f213901a808ad924f4b1ffa87fb87f2f75d..0000000000000000000000000000000000000000
--- a/ui_programm_fragmente/upload_to_checklist.py
+++ /dev/null
@@ -1,78 +0,0 @@
-import dash
-from dash import dcc
-from dash import html
-from dash.dependencies import Input, Output, State
-import base64
-import re
-
-app = dash.Dash(__name__)
-
-list_of_inputs = dict()
-
-app.layout = html.Div([
- html.H4("Add all lines in a file to a list"),
- html.Div([
- dcc.Upload(
- id="upload-data",
- children=html.Div(
- ["Drag and drop or click to select a file to upload."]
- ),
-
- style={
- "width": "30%",
- "height": "60px",
- "lineHeight": "60px",
- "borderWidth": "1px",
- "borderStyle": "dashed",
- "borderRadius": "5px",
- "textAlign": "center",
- "margin": "10px",
- }),
-
- ]),
- dcc.Checklist(id='input-checklist',options=list(),labelStyle = dict(display='block'),value=[]),
-
-])
-
-@app.callback(
- Output('input-checklist','options'),
- Input('upload-data','filename'),
- Input('upload-data','contents'),
- State('input-checklist','options')
-)
-def update_input_list(uploaded_filenames,uploaded_file_contents,all_inputs):
- if uploaded_file_contents is not None:
-
-
- string = uploaded_file_contents
-
- #cutting the first part of the String away to decode
- found = base64.b64decode(re.search(',(.+?)$', string).group(1))
- print(found.decode('utf-8'))
-
- uploaded_file_contents = found.decode('utf-8')
-
-
- list_of_inputs = (uploaded_file_contents.split())
- #das hier sollte es untereinander anzeigen, bekomme ich allerdings nicht auf die Seite...
- #return (*list_of_inputs, sep="\n")
-
- options = all_inputs
- if not options:
- options = list()
- CurrValues = [x['value'] for x in options]
-
-
- # würde auch funktionieren
- # return (found.decode('utf-8'))
- for i in list_of_inputs:
- if i not in CurrValues:
- options.append({'label':i, 'value':i})
-
-
- return options
-
-if __name__ == '__main__':
- app.run_server(debug=True)
-
-