diff --git a/assets/cn.js b/assets/cn.js
index 1eb8d52c97841f87e629bf859acc5460c717fbb2..f85532dad853984d307dce1c7455a32c53c8726c 100644
--- a/assets/cn.js
+++ b/assets/cn.js
@@ -54,7 +54,7 @@ var svg_legend = d3.select("svg.legendsvg"),
legend_position = [65,95,125],
arrow_legend_position = [0,25],
arrow_group_names = ["Citation","Self-Citation"],
-group_names = ["Cited By","Input","Reference"],
+group_names = ["Cited-by","Input","Reference"],
line_type = d3.scaleOrdinal()
.domain(["line","dotted"])
.range([("8,0"),("8,8")]),
diff --git a/assets/cn2.js b/assets/cn2.js
index 992356fab8ca0bbdd1b6dce5dafc9f330a9a9e30..9957ad26a5a10ff49a6581bcaa0558cda0791e1b 100644
--- a/assets/cn2.js
+++ b/assets/cn2.js
@@ -54,7 +54,7 @@ var svg_legend = d3.select("svg.legendsvg"),
legend_position = [65,95,125],
arrow_legend_position = [0,25],
arrow_group_names = ["Citation","Self-Citation"],
-group_names = ["Cited By","Input","Reference"],
+group_names = ["Cited-by","Input","Reference"],
line_type = d3.scaleOrdinal()
.domain(["line","dotted"])
.range([("8,0"),("8,8")]),
diff --git a/assets/index.html b/assets/index.html
index ed4ed325f82866bf27acf534d513e43d45d32114..45ddf6e59e16fa9674a72560e1cce0597f605770 100644
--- a/assets/index.html
+++ b/assets/index.html
@@ -11,7 +11,7 @@
display: flex;
justify-content: center;
position: absolute;
- left: 75px;
+ left: 140px;
top: 580px;
transition-duration: 0.4s;
border-radius: 3px;
@@ -40,7 +40,7 @@
width: 146px;
position: absolute;
top: 181px;
- left: 624px;
+ left: 754px;
border-radius: 0;
border: 1px solid #909090;
}
@@ -50,7 +50,7 @@
position: absolute;
display: inline-block;
top: 181px;
- left: 478px;
+ left: 608px;
border-radius: 0;
border: 1px solid #909090;
}
@@ -61,7 +61,7 @@
padding: 10px;
position: absolute;
top: 10px;
- left: 478px;
+ left: 608px;
display: inline-block;
margin: 0;
}
@@ -74,7 +74,7 @@
border: 1px solid #999;
position: absolute;
top: 200px;
- left: 478px;
+ left: 608px;
display: inline-block;
overflow-y: scroll;
margin: 0;
@@ -91,7 +91,7 @@
<button id="change_graph" class="display" onclick="display()">Display Timeline</button>
<!-- graph 576-->
- <svg class="graph" width="470" height="560"></svg>
+ <svg class="graph" width="600" height="560"></svg>
<p id="oldjson"></p>
<!-- legend -->
diff --git a/assets/json_text.json b/assets/json_text.json
index b8177a35f64f22f16224949cf9e8c88ae7fdbe6b..c023ef5d5336e592b992489e70d4f7fdb79ef761 100644
--- a/assets/json_text.json
+++ b/assets/json_text.json
@@ -1 +1,114 @@
-{"nodes": [], "links": []}
\ No newline at end of file
+{
+ "nodes": [
+ {
+ "doi": "https://doi.org/10.1021/acs.jcim.5b00332",
+ "name": "Feasibility of Active Machine Learning for Multiclass Compound Classification",
+ "author": [
+ "Tobias Löang",
+ "Florian Flachsenberg",
+ "Ulrike von Luxburg",
+ "Matthias Rarey"
+ ],
+ "year": "January 7, 2016",
+ "journal": "Journal of Chemical Information and Modeling",
+ "group": "Input",
+ "depth": 0,
+ "citations": 5
+ },
+ {
+ "doi": "https://doi.org/10.1021/acs.jcim.7b00729",
+ "name": "Modeling Kinase Inhibition Using Highly Confident Data Sets",
+ "author": [
+ "Sorin Avram",
+ "Alina Bora",
+ "Liliana Halip",
+ "Ramona Curp\u0103n"
+ ],
+ "year": "April 30, 2018",
+ "journal": "Journal of Chemical Information and Modeling",
+ "group": "Citedby",
+ "depth": 1,
+ "citations": 0
+ },
+ {
+ "doi": "https://doi.org/10.1021/acs.jcim.7b00729",
+ "name": "Modeling Kinase Inhibition Using Highly Confident Data Sets",
+ "author": [
+ "Sorin Avram",
+ "Alina Bora",
+ "Liliana Halip",
+ "Ramona Curp\u0103n"
+ ],
+ "year": "April 30, 2018",
+ "journal": "Journal of Chemical Information and Modeling",
+ "group": "Citedby",
+ "depth": 1,
+ "citations": 0
+ },
+ {
+ "doi": "https://doi.org/10.1021/acs.jcim.5b00646",
+ "name": "Predictive Models for Fast and Effective Profiling of Kinase Inhibitors",
+ "author": [
+ "Alina Bora",
+ "Sorin Avram",
+ "Ionel Ciucanu",
+ "Marius Raica",
+ "Stefana Avram"
+ ],
+ "year": "April 11, 2016",
+ "journal": "Journal of Chemical Information and Modeling",
+ "group": "Citedby",
+ "depth": 1,
+ "citations": 2
+ },
+ {
+ "doi": "https://doi.org/10.1021/acs.jcim.6b00709",
+ "name": "Matched Molecular Series: Measuring SAR Similarity",
+ "author": [
+ "Emanuel S. R. Ehmki",
+ "Christian Kramer"
+ ],
+ "year": "May 1, 2017",
+ "journal": "Journal of Chemical Information and Modeling",
+ "group": "Input",
+ "depth": 0,
+ "citations": 5
+ },
+ {
+ "doi": "https://doi.org/10.1021/acs.jcim.0c00269",
+ "name": "Matched Molecular Series Analysis for ADME Property Prediction",
+ "author": [
+ "Mahendra Awale",
+ "Sereina Riniker",
+ "Christian Kramer"
+ ],
+ "year": "May 5, 2020",
+ "journal": "Journal of Chemical Information and Modeling",
+ "group": "Citedby",
+ "depth": 1,
+ "citations": 6
+ }
+ ],
+ "links": [
+ {
+ "source": "https://doi.org/10.1021/acs.jcim.7b00729",
+ "target": "https://doi.org/10.1021/acs.jcim.5b00332"
+ },
+ {
+ "source": "https://doi.org/10.1021/acs.jcim.7b00729",
+ "target": "https://doi.org/10.1021/acs.jcim.5b00332"
+ },
+ {
+ "source": "https://doi.org/10.1021/acs.jcim.5b00646",
+ "target": "https://doi.org/10.1021/acs.jcim.5b00332"
+ },
+ {
+ "source": "https://doi.org/10.1021/acs.jcim.7b00729",
+ "target": "https://doi.org/10.1021/acs.jcim.5b00646"
+ },
+ {
+ "source": "https://doi.org/10.1021/acs.jcim.0c00269",
+ "target": "https://doi.org/10.1021/acs.jcim.6b00709"
+ }
+ ]
+}
diff --git a/citation_parser_main.py b/citation_parser_main.py
index 997a8c14e1072406b1efa69a6423addb58d36b08..48e37d3fd4267b5a4a363b7eb246d551aef84d7c 100644
--- a/citation_parser_main.py
+++ b/citation_parser_main.py
@@ -49,7 +49,7 @@ html.Div(children=[
# A simple box for inputting a string.
# Value is transmitted upon pressing return or clicking out of the box.
dcc.Input(id='string-input', value='', type='text',debounce=True,
- style={ "width": "362px", 'margin-top': "10px"},
+ style={ "width": "322px", 'margin-top': "10px"},
),
]),size="lg", color="primary", type="border", fullscreen=True,),
@@ -72,14 +72,14 @@ html.Div(children=[
#Drag and drop or click to select a file to upload
["Drag and drop"]),
style={
- "width": "400px",
+ "width": "360px",
"height": "60px",
"lineHeight": "60px",
"borderWidth": "1px",
"borderStyle": "dashed",
"borderRadius": "5px",
"textAlign": "center",
- "margin": "10px",
+ "margin": "10px"
}),size="lg", color="primary", type="border", fullscreen=True,),
]),
@@ -112,7 +112,7 @@ html.Div(children=[
html.Div(children=[
# Layer 5: For the Graph and corresponding error messages
dbc.Spinner(html.Div([
- html.Div(id='generate-graph-error',style={'color':'red'}),
+ html.Div(id='generate-graph-error',style={'color':'red', 'position': "absolute", 'margin-top': "650px"}),
html.Iframe(
src="assets/index.html",
style={"height": "650px", "width": "980px"},