diff --git a/.DS_Store b/.DS_Store
deleted file mode 100644
index 5008ddfcf53c02e82d7eee2e57c38e5672ef89f6..0000000000000000000000000000000000000000
Binary files a/.DS_Store and /dev/null differ
diff --git a/.VSCodeCounter/2022-01-05_11-11-20/details.md b/.VSCodeCounter/2022-01-05_11-11-20/details.md
deleted file mode 100644
index c6c03fa2963e931cfb54b535cf305844ce510fed..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-11-20/details.md
+++ /dev/null
@@ -1,75 +0,0 @@
-# Details
-
-Date : 2022-01-05 11:11:20
-
-Directory c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung
-
-Total : 60 files, 4426 codes, 857 comments, 956 blanks, all 6239 lines
-
-[summary](results.md)
-
-## Files
-| filename | language | code | comment | blank | total |
-| :--- | :--- | ---: | ---: | ---: | ---: |
-| [assets/cn.js](/assets/cn.js) | JavaScript | 347 | 134 | 68 | 549 |
-| [assets/index.html](/assets/index.html) | HTML | 84 | 8 | 15 | 107 |
-| [assets/json_text.json](/assets/json_text.json) | JSON | 1 | 0 | 0 | 1 |
-| [citation_parser_ui.py](/citation_parser_ui.py) | Python | 198 | 40 | 17 | 255 |
-| [count_journal.py](/count_journal.py) | Python | 29 | 4 | 8 | 41 |
-| [example_input.py](/example_input.py) | Python | 6 | 4 | 4 | 14 |
-| [input/.VSCodeCounter/2021-12-24_13-19-53/details.md](/input/.VSCodeCounter/2021-12-24_13-19-53/details.md) | Markdown | 22 | 0 | 6 | 28 |
-| [input/.VSCodeCounter/2021-12-24_13-19-53/results.md](/input/.VSCodeCounter/2021-12-24_13-19-53/results.md) | Markdown | 18 | 0 | 7 | 25 |
-| [input/README.md](/input/README.md) | Markdown | 38 | 0 | 12 | 50 |
-| [input/__init__.py](/input/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [input/get/__init__.py](/input/get/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [input/get/acs.py](/input/get/acs.py) | Python | 105 | 41 | 47 | 193 |
-| [input/get/journal_fetcher.py](/input/get/journal_fetcher.py) | Python | 59 | 25 | 12 | 96 |
-| [input/get/nature.py](/input/get/nature.py) | Python | 21 | 23 | 16 | 60 |
-| [input/get/template_.py](/input/get/template_.py) | Python | 10 | 31 | 10 | 51 |
-| [input/interface.py](/input/interface.py) | Python | 46 | 47 | 21 | 114 |
-| [input/publication.py](/input/publication.py) | Python | 80 | 49 | 15 | 144 |
-| [input/requirements.txt](/input/requirements.txt) | pip requirements | 2 | 0 | 0 | 2 |
-| [input/test/__init__.py](/input/test/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [input/test/test_acs.py](/input/test/test_acs.py) | Python | 285 | 7 | 11 | 303 |
-| [input/test/test_input.py](/input/test/test_input.py) | Python | 40 | 28 | 14 | 82 |
-| [input_old/README.md](/input_old/README.md) | Markdown | 2 | 0 | 2 | 4 |
-| [input_old/input_fj.py](/input_old/input_fj.py) | Python | 118 | 20 | 17 | 155 |
-| [input_old/pub.py](/input_old/pub.py) | Python | 24 | 4 | 5 | 33 |
-| [input_old/test.py](/input_old/test.py) | Python | 11 | 1 | 4 | 16 |
-| [output/README.md](/output/README.md) | Markdown | 40 | 0 | 6 | 46 |
-| [output/graph/cn.js](/output/graph/cn.js) | JavaScript | 347 | 134 | 68 | 549 |
-| [output/graph/index.html](/output/graph/index.html) | HTML | 84 | 8 | 15 | 107 |
-| [output/graph/json_text.json](/output/graph/json_text.json) | JSON | 819 | 0 | 0 | 819 |
-| [start_script.py](/start_script.py) | Python | 12 | 4 | 4 | 20 |
-| [test.json](/test.json) | JSON | 1 | 0 | 0 | 1 |
-| [ui_programm_fragmente/README.md](/ui_programm_fragmente/README.md) | Markdown | 23 | 0 | 16 | 39 |
-| [ui_programm_fragmente/input_to_checklist.py](/ui_programm_fragmente/input_to_checklist.py) | Python | 144 | 9 | 8 | 161 |
-| [ui_programm_fragmente/upload_to_checklist.py](/ui_programm_fragmente/upload_to_checklist.py) | Python | 52 | 5 | 22 | 79 |
-| [verarbeitung/README.md](/verarbeitung/README.md) | Markdown | 39 | 0 | 22 | 61 |
-| [verarbeitung/__init__.py](/verarbeitung/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [verarbeitung/construct_new_graph/README.md](/verarbeitung/construct_new_graph/README.md) | Markdown | 18 | 0 | 11 | 29 |
-| [verarbeitung/construct_new_graph/__init__.py](/verarbeitung/construct_new_graph/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [verarbeitung/construct_new_graph/add_citations_rec.py](/verarbeitung/construct_new_graph/add_citations_rec.py) | Python | 140 | 15 | 50 | 205 |
-| [verarbeitung/construct_new_graph/export_to_json.py](/verarbeitung/construct_new_graph/export_to_json.py) | Python | 66 | 12 | 13 | 91 |
-| [verarbeitung/construct_new_graph/initialize_graph.py](/verarbeitung/construct_new_graph/initialize_graph.py) | Python | 127 | 25 | 45 | 197 |
-| [verarbeitung/dev_files/README.md](/verarbeitung/dev_files/README.md) | Markdown | 1 | 0 | 0 | 1 |
-| [verarbeitung/dev_files/__init__.py](/verarbeitung/dev_files/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [verarbeitung/dev_files/print_graph_test.py](/verarbeitung/dev_files/print_graph_test.py) | Python | 53 | 36 | 19 | 108 |
-| [verarbeitung/get_pub_from_input.py](/verarbeitung/get_pub_from_input.py) | Python | 27 | 12 | 9 | 48 |
-| [verarbeitung/process_main.py](/verarbeitung/process_main.py) | Python | 29 | 12 | 15 | 56 |
-| [verarbeitung/test/README.md](/verarbeitung/test/README.md) | Markdown | 16 | 0 | 9 | 25 |
-| [verarbeitung/test/__init__.py](/verarbeitung/test/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [verarbeitung/test/construct_graph_unittest.py](/verarbeitung/test/construct_graph_unittest.py) | Python | 165 | 10 | 56 | 231 |
-| [verarbeitung/test/input_test.py](/verarbeitung/test/input_test.py) | Python | 83 | 0 | 22 | 105 |
-| [verarbeitung/test/update_graph_unittest.py](/verarbeitung/test/update_graph_unittest.py) | Python | 125 | 4 | 32 | 161 |
-| [verarbeitung/update_graph/README.md](/verarbeitung/update_graph/README.md) | Markdown | 24 | 0 | 17 | 41 |
-| [verarbeitung/update_graph/__init__.py](/verarbeitung/update_graph/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [verarbeitung/update_graph/compare_old_and_new_node_lists.py](/verarbeitung/update_graph/compare_old_and_new_node_lists.py) | Python | 23 | 7 | 8 | 38 |
-| [verarbeitung/update_graph/connect_new_input.py](/verarbeitung/update_graph/connect_new_input.py) | Python | 91 | 23 | 39 | 153 |
-| [verarbeitung/update_graph/delete_nodes_edges.py](/verarbeitung/update_graph/delete_nodes_edges.py) | Python | 62 | 13 | 21 | 96 |
-| [verarbeitung/update_graph/import_from_json.py](/verarbeitung/update_graph/import_from_json.py) | Python | 46 | 20 | 25 | 91 |
-| [verarbeitung/update_graph/update_depth.py](/verarbeitung/update_graph/update_depth.py) | Python | 135 | 14 | 46 | 195 |
-| [verarbeitung/update_graph/update_edges.py](/verarbeitung/update_graph/update_edges.py) | Python | 19 | 10 | 9 | 38 |
-| [verarbeitung/update_graph/update_graph.py](/verarbeitung/update_graph/update_graph.py) | Python | 69 | 18 | 30 | 117 |
-
-[summary](results.md)
\ No newline at end of file
diff --git a/.VSCodeCounter/2022-01-05_11-11-20/results.csv b/.VSCodeCounter/2022-01-05_11-11-20/results.csv
deleted file mode 100644
index 238cb3b6fe549e7e2122b0dfe63b36af70047d46..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-11-20/results.csv
+++ /dev/null
@@ -1,62 +0,0 @@
-"filename", "language", "Python", "Markdown", "JSON", "HTML", "JavaScript", "pip requirements", "comment", "blank", "total"
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\assets\cn.js", "JavaScript", 0, 0, 0, 0, 347, 0, 134, 68, 549
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\assets\index.html", "HTML", 0, 0, 0, 84, 0, 0, 8, 15, 107
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\assets\json_text.json", "JSON", 0, 0, 1, 0, 0, 0, 0, 0, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\citation_parser_ui.py", "Python", 198, 0, 0, 0, 0, 0, 40, 17, 255
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\count_journal.py", "Python", 29, 0, 0, 0, 0, 0, 4, 8, 41
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\example_input.py", "Python", 6, 0, 0, 0, 0, 0, 4, 4, 14
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\.VSCodeCounter\2021-12-24_13-19-53\details.md", "Markdown", 0, 22, 0, 0, 0, 0, 0, 6, 28
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\.VSCodeCounter\2021-12-24_13-19-53\results.md", "Markdown", 0, 18, 0, 0, 0, 0, 0, 7, 25
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\README.md", "Markdown", 0, 38, 0, 0, 0, 0, 0, 12, 50
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\acs.py", "Python", 105, 0, 0, 0, 0, 0, 41, 47, 193
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\journal_fetcher.py", "Python", 59, 0, 0, 0, 0, 0, 25, 12, 96
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\nature.py", "Python", 21, 0, 0, 0, 0, 0, 23, 16, 60
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\template_.py", "Python", 10, 0, 0, 0, 0, 0, 31, 10, 51
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\interface.py", "Python", 46, 0, 0, 0, 0, 0, 47, 21, 114
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\publication.py", "Python", 80, 0, 0, 0, 0, 0, 49, 15, 144
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\requirements.txt", "pip requirements", 0, 0, 0, 0, 0, 2, 0, 0, 2
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\test\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\test\test_acs.py", "Python", 285, 0, 0, 0, 0, 0, 7, 11, 303
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\test\test_input.py", "Python", 40, 0, 0, 0, 0, 0, 28, 14, 82
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\README.md", "Markdown", 0, 2, 0, 0, 0, 0, 0, 2, 4
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\input_fj.py", "Python", 118, 0, 0, 0, 0, 0, 20, 17, 155
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\pub.py", "Python", 24, 0, 0, 0, 0, 0, 4, 5, 33
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\test.py", "Python", 11, 0, 0, 0, 0, 0, 1, 4, 16
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\README.md", "Markdown", 0, 40, 0, 0, 0, 0, 0, 6, 46
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\cn.js", "JavaScript", 0, 0, 0, 0, 347, 0, 134, 68, 549
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\index.html", "HTML", 0, 0, 0, 84, 0, 0, 8, 15, 107
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\json_text.json", "JSON", 0, 0, 819, 0, 0, 0, 0, 0, 819
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\start_script.py", "Python", 12, 0, 0, 0, 0, 0, 4, 4, 20
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\test.json", "JSON", 0, 0, 1, 0, 0, 0, 0, 0, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\ui_programm_fragmente\README.md", "Markdown", 0, 23, 0, 0, 0, 0, 0, 16, 39
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\ui_programm_fragmente\input_to_checklist.py", "Python", 144, 0, 0, 0, 0, 0, 9, 8, 161
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\ui_programm_fragmente\upload_to_checklist.py", "Python", 52, 0, 0, 0, 0, 0, 5, 22, 79
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\README.md", "Markdown", 0, 39, 0, 0, 0, 0, 0, 22, 61
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\README.md", "Markdown", 0, 18, 0, 0, 0, 0, 0, 11, 29
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\add_citations_rec.py", "Python", 140, 0, 0, 0, 0, 0, 15, 50, 205
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\export_to_json.py", "Python", 66, 0, 0, 0, 0, 0, 12, 13, 91
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\initialize_graph.py", "Python", 127, 0, 0, 0, 0, 0, 25, 45, 197
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\dev_files\README.md", "Markdown", 0, 1, 0, 0, 0, 0, 0, 0, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\dev_files\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\dev_files\print_graph_test.py", "Python", 53, 0, 0, 0, 0, 0, 36, 19, 108
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\get_pub_from_input.py", "Python", 27, 0, 0, 0, 0, 0, 12, 9, 48
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\process_main.py", "Python", 29, 0, 0, 0, 0, 0, 12, 15, 56
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\README.md", "Markdown", 0, 16, 0, 0, 0, 0, 0, 9, 25
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\construct_graph_unittest.py", "Python", 165, 0, 0, 0, 0, 0, 10, 56, 231
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\input_test.py", "Python", 83, 0, 0, 0, 0, 0, 0, 22, 105
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\update_graph_unittest.py", "Python", 125, 0, 0, 0, 0, 0, 4, 32, 161
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\README.md", "Markdown", 0, 24, 0, 0, 0, 0, 0, 17, 41
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\__init__.py", "Python", 0, 0, 0, 0, 0, 0, 0, 1, 1
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\compare_old_and_new_node_lists.py", "Python", 23, 0, 0, 0, 0, 0, 7, 8, 38
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\connect_new_input.py", "Python", 91, 0, 0, 0, 0, 0, 23, 39, 153
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\delete_nodes_edges.py", "Python", 62, 0, 0, 0, 0, 0, 13, 21, 96
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\import_from_json.py", "Python", 46, 0, 0, 0, 0, 0, 20, 25, 91
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\update_depth.py", "Python", 135, 0, 0, 0, 0, 0, 14, 46, 195
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\update_edges.py", "Python", 19, 0, 0, 0, 0, 0, 10, 9, 38
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\update_graph.py", "Python", 69, 0, 0, 0, 0, 0, 18, 30, 117
-"Total", "-", 2500, 241, 821, 168, 694, 2, 857, 956, 6239
\ No newline at end of file
diff --git a/.VSCodeCounter/2022-01-05_11-11-20/results.md b/.VSCodeCounter/2022-01-05_11-11-20/results.md
deleted file mode 100644
index c151a7d32c9afd6e29c26c8daac04077b5ba1b8d..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-11-20/results.md
+++ /dev/null
@@ -1,41 +0,0 @@
-# Summary
-
-Date : 2022-01-05 11:11:20
-
-Directory c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung
-
-Total : 60 files, 4426 codes, 857 comments, 956 blanks, all 6239 lines
-
-[details](details.md)
-
-## Languages
-| language | files | code | comment | blank | total |
-| :--- | ---: | ---: | ---: | ---: | ---: |
-| Python | 41 | 2,500 | 573 | 682 | 3,755 |
-| JSON | 3 | 821 | 0 | 0 | 821 |
-| JavaScript | 2 | 694 | 268 | 136 | 1,098 |
-| Markdown | 11 | 241 | 0 | 108 | 349 |
-| HTML | 2 | 168 | 16 | 30 | 214 |
-| pip requirements | 1 | 2 | 0 | 0 | 2 |
-
-## Directories
-| path | files | code | comment | blank | total |
-| :--- | ---: | ---: | ---: | ---: | ---: |
-| . | 60 | 4,426 | 857 | 956 | 6,239 |
-| assets | 3 | 432 | 142 | 83 | 657 |
-| input | 15 | 726 | 251 | 174 | 1,151 |
-| input\.VSCodeCounter | 2 | 40 | 0 | 13 | 53 |
-| input\.VSCodeCounter\2021-12-24_13-19-53 | 2 | 40 | 0 | 13 | 53 |
-| input\get | 5 | 195 | 120 | 86 | 401 |
-| input\test | 3 | 325 | 35 | 26 | 386 |
-| input_old | 4 | 155 | 25 | 28 | 208 |
-| output | 4 | 1,290 | 142 | 89 | 1,521 |
-| output\graph | 3 | 1,250 | 142 | 83 | 1,475 |
-| ui_programm_fragmente | 3 | 219 | 14 | 46 | 279 |
-| verarbeitung | 26 | 1,358 | 231 | 503 | 2,092 |
-| verarbeitung\construct_new_graph | 5 | 351 | 52 | 120 | 523 |
-| verarbeitung\dev_files | 3 | 54 | 36 | 20 | 110 |
-| verarbeitung\test | 5 | 389 | 14 | 120 | 523 |
-| verarbeitung\update_graph | 9 | 469 | 105 | 196 | 770 |
-
-[details](details.md)
\ No newline at end of file
diff --git a/.VSCodeCounter/2022-01-05_11-11-20/results.txt b/.VSCodeCounter/2022-01-05_11-11-20/results.txt
deleted file mode 100644
index 0327635ea105ae782fcbfaa999a93fb0c86e22b7..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-11-20/results.txt
+++ /dev/null
@@ -1,104 +0,0 @@
-Date : 2022-01-05 11:11:20
-Directory : c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung
-Total : 60 files, 4426 codes, 857 comments, 956 blanks, all 6239 lines
-
-Languages
-+------------------+------------+------------+------------+------------+------------+
-| language | files | code | comment | blank | total |
-+------------------+------------+------------+------------+------------+------------+
-| Python | 41 | 2,500 | 573 | 682 | 3,755 |
-| JSON | 3 | 821 | 0 | 0 | 821 |
-| JavaScript | 2 | 694 | 268 | 136 | 1,098 |
-| Markdown | 11 | 241 | 0 | 108 | 349 |
-| HTML | 2 | 168 | 16 | 30 | 214 |
-| pip requirements | 1 | 2 | 0 | 0 | 2 |
-+------------------+------------+------------+------------+------------+------------+
-
-Directories
-+----------------------------------------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| path | files | code | comment | blank | total |
-+----------------------------------------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| . | 60 | 4,426 | 857 | 956 | 6,239 |
-| assets | 3 | 432 | 142 | 83 | 657 |
-| input | 15 | 726 | 251 | 174 | 1,151 |
-| input\.VSCodeCounter | 2 | 40 | 0 | 13 | 53 |
-| input\.VSCodeCounter\2021-12-24_13-19-53 | 2 | 40 | 0 | 13 | 53 |
-| input\get | 5 | 195 | 120 | 86 | 401 |
-| input\test | 3 | 325 | 35 | 26 | 386 |
-| input_old | 4 | 155 | 25 | 28 | 208 |
-| output | 4 | 1,290 | 142 | 89 | 1,521 |
-| output\graph | 3 | 1,250 | 142 | 83 | 1,475 |
-| ui_programm_fragmente | 3 | 219 | 14 | 46 | 279 |
-| verarbeitung | 26 | 1,358 | 231 | 503 | 2,092 |
-| verarbeitung\construct_new_graph | 5 | 351 | 52 | 120 | 523 |
-| verarbeitung\dev_files | 3 | 54 | 36 | 20 | 110 |
-| verarbeitung\test | 5 | 389 | 14 | 120 | 523 |
-| verarbeitung\update_graph | 9 | 469 | 105 | 196 | 770 |
-+----------------------------------------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-
-Files
-+----------------------------------------------------------------------------------------------------------------------+------------------+------------+------------+------------+------------+
-| filename | language | code | comment | blank | total |
-+----------------------------------------------------------------------------------------------------------------------+------------------+------------+------------+------------+------------+
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\assets\cn.js | JavaScript | 347 | 134 | 68 | 549 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\assets\index.html | HTML | 84 | 8 | 15 | 107 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\assets\json_text.json | JSON | 1 | 0 | 0 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\citation_parser_ui.py | Python | 198 | 40 | 17 | 255 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\count_journal.py | Python | 29 | 4 | 8 | 41 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\example_input.py | Python | 6 | 4 | 4 | 14 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\.VSCodeCounter\2021-12-24_13-19-53\details.md | Markdown | 22 | 0 | 6 | 28 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\.VSCodeCounter\2021-12-24_13-19-53\results.md | Markdown | 18 | 0 | 7 | 25 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\README.md | Markdown | 38 | 0 | 12 | 50 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\acs.py | Python | 105 | 41 | 47 | 193 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\journal_fetcher.py | Python | 59 | 25 | 12 | 96 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\nature.py | Python | 21 | 23 | 16 | 60 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\get\template_.py | Python | 10 | 31 | 10 | 51 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\interface.py | Python | 46 | 47 | 21 | 114 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\publication.py | Python | 80 | 49 | 15 | 144 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\requirements.txt | pip requirements | 2 | 0 | 0 | 2 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\test\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\test\test_acs.py | Python | 285 | 7 | 11 | 303 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input\test\test_input.py | Python | 40 | 28 | 14 | 82 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\README.md | Markdown | 2 | 0 | 2 | 4 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\input_fj.py | Python | 118 | 20 | 17 | 155 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\pub.py | Python | 24 | 4 | 5 | 33 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\input_old\test.py | Python | 11 | 1 | 4 | 16 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\README.md | Markdown | 40 | 0 | 6 | 46 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\cn.js | JavaScript | 347 | 134 | 68 | 549 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\index.html | HTML | 84 | 8 | 15 | 107 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\json_text.json | JSON | 819 | 0 | 0 | 819 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\start_script.py | Python | 12 | 4 | 4 | 20 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\test.json | JSON | 1 | 0 | 0 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\ui_programm_fragmente\README.md | Markdown | 23 | 0 | 16 | 39 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\ui_programm_fragmente\input_to_checklist.py | Python | 144 | 9 | 8 | 161 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\ui_programm_fragmente\upload_to_checklist.py | Python | 52 | 5 | 22 | 79 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\README.md | Markdown | 39 | 0 | 22 | 61 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\README.md | Markdown | 18 | 0 | 11 | 29 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\add_citations_rec.py | Python | 140 | 15 | 50 | 205 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\export_to_json.py | Python | 66 | 12 | 13 | 91 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\construct_new_graph\initialize_graph.py | Python | 127 | 25 | 45 | 197 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\dev_files\README.md | Markdown | 1 | 0 | 0 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\dev_files\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\dev_files\print_graph_test.py | Python | 53 | 36 | 19 | 108 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\get_pub_from_input.py | Python | 27 | 12 | 9 | 48 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\process_main.py | Python | 29 | 12 | 15 | 56 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\README.md | Markdown | 16 | 0 | 9 | 25 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\construct_graph_unittest.py | Python | 165 | 10 | 56 | 231 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\input_test.py | Python | 83 | 0 | 22 | 105 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\test\update_graph_unittest.py | Python | 125 | 4 | 32 | 161 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\README.md | Markdown | 24 | 0 | 17 | 41 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\compare_old_and_new_node_lists.py | Python | 23 | 7 | 8 | 38 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\connect_new_input.py | Python | 91 | 23 | 39 | 153 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\delete_nodes_edges.py | Python | 62 | 13 | 21 | 96 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\import_from_json.py | Python | 46 | 20 | 25 | 91 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\update_depth.py | Python | 135 | 14 | 46 | 195 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\update_edges.py | Python | 19 | 10 | 9 | 38 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\verarbeitung\update_graph\update_graph.py | Python | 69 | 18 | 30 | 117 |
-| Total | | 4,426 | 857 | 956 | 6,239 |
-+----------------------------------------------------------------------------------------------------------------------+------------------+------------+------------+------------+------------+
\ No newline at end of file
diff --git a/.VSCodeCounter/2022-01-05_11-23-29/details.md b/.VSCodeCounter/2022-01-05_11-23-29/details.md
deleted file mode 100644
index 0e70130b691ea9a351f0c36230251bd4b9cf16bd..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-23-29/details.md
+++ /dev/null
@@ -1,19 +0,0 @@
-# Details
-
-Date : 2022-01-05 11:23:29
-
-Directory c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output
-
-Total : 4 files, 1290 codes, 142 comments, 89 blanks, all 1521 lines
-
-[summary](results.md)
-
-## Files
-| filename | language | code | comment | blank | total |
-| :--- | :--- | ---: | ---: | ---: | ---: |
-| [output/README.md](/output/README.md) | Markdown | 40 | 0 | 6 | 46 |
-| [output/graph/cn.js](/output/graph/cn.js) | JavaScript | 347 | 134 | 68 | 549 |
-| [output/graph/index.html](/output/graph/index.html) | HTML | 84 | 8 | 15 | 107 |
-| [output/graph/json_text.json](/output/graph/json_text.json) | JSON | 819 | 0 | 0 | 819 |
-
-[summary](results.md)
\ No newline at end of file
diff --git a/.VSCodeCounter/2022-01-05_11-23-29/results.csv b/.VSCodeCounter/2022-01-05_11-23-29/results.csv
deleted file mode 100644
index aa8e5c38deb738d27f159d0d911eadb6abf42e8a..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-23-29/results.csv
+++ /dev/null
@@ -1,6 +0,0 @@
-"filename", "language", "Markdown", "HTML", "JavaScript", "JSON", "comment", "blank", "total"
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\README.md", "Markdown", 40, 0, 0, 0, 0, 6, 46
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\cn.js", "JavaScript", 0, 0, 347, 0, 134, 68, 549
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\index.html", "HTML", 0, 84, 0, 0, 8, 15, 107
-"c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\json_text.json", "JSON", 0, 0, 0, 819, 0, 0, 819
-"Total", "-", 40, 84, 347, 819, 142, 89, 1521
\ No newline at end of file
diff --git a/.VSCodeCounter/2022-01-05_11-23-29/results.md b/.VSCodeCounter/2022-01-05_11-23-29/results.md
deleted file mode 100644
index e3c40ca3387db6b6a8c4a0e026bf732b686fa374..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-23-29/results.md
+++ /dev/null
@@ -1,25 +0,0 @@
-# Summary
-
-Date : 2022-01-05 11:23:29
-
-Directory c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output
-
-Total : 4 files, 1290 codes, 142 comments, 89 blanks, all 1521 lines
-
-[details](details.md)
-
-## Languages
-| language | files | code | comment | blank | total |
-| :--- | ---: | ---: | ---: | ---: | ---: |
-| JSON | 1 | 819 | 0 | 0 | 819 |
-| JavaScript | 1 | 347 | 134 | 68 | 549 |
-| HTML | 1 | 84 | 8 | 15 | 107 |
-| Markdown | 1 | 40 | 0 | 6 | 46 |
-
-## Directories
-| path | files | code | comment | blank | total |
-| :--- | ---: | ---: | ---: | ---: | ---: |
-| . | 4 | 1,290 | 142 | 89 | 1,521 |
-| graph | 3 | 1,250 | 142 | 83 | 1,475 |
-
-[details](details.md)
\ No newline at end of file
diff --git a/.VSCodeCounter/2022-01-05_11-23-29/results.txt b/.VSCodeCounter/2022-01-05_11-23-29/results.txt
deleted file mode 100644
index a71dc0ce078a7cad90eaf6b08532619188ff2b8e..0000000000000000000000000000000000000000
--- a/.VSCodeCounter/2022-01-05_11-23-29/results.txt
+++ /dev/null
@@ -1,32 +0,0 @@
-Date : 2022-01-05 11:23:29
-Directory : c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output
-Total : 4 files, 1290 codes, 142 comments, 89 blanks, all 1521 lines
-
-Languages
-+------------+------------+------------+------------+------------+------------+
-| language | files | code | comment | blank | total |
-+------------+------------+------------+------------+------------+------------+
-| JSON | 1 | 819 | 0 | 0 | 819 |
-| JavaScript | 1 | 347 | 134 | 68 | 549 |
-| HTML | 1 | 84 | 8 | 15 | 107 |
-| Markdown | 1 | 40 | 0 | 6 | 46 |
-+------------+------------+------------+------------+------------+------------+
-
-Directories
-+--------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| path | files | code | comment | blank | total |
-+--------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| . | 4 | 1,290 | 142 | 89 | 1,521 |
-| graph | 3 | 1,250 | 142 | 83 | 1,475 |
-+--------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-
-Files
-+--------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| filename | language | code | comment | blank | total |
-+--------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\README.md | Markdown | 40 | 0 | 6 | 46 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\cn.js | JavaScript | 347 | 134 | 68 | 549 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\index.html | HTML | 84 | 8 | 15 | 107 |
-| c:\Users\Malte\Git\CiS-Projekt\ci-s-projekt-verarbeitung\output\graph\json_text.json | JSON | 819 | 0 | 0 | 819 |
-| Total | | 1,290 | 142 | 89 | 1,521 |
-+--------------------------------------------------------------------------------------+------------+------------+------------+------------+------------+
\ No newline at end of file
diff --git a/ui_programm_fragmente/README.md b/README.md
similarity index 100%
rename from ui_programm_fragmente/README.md
rename to README.md
diff --git a/assets/README.md b/assets/README.md
new file mode 100644
index 0000000000000000000000000000000000000000..418fdbecc82cdc61979325e9ca7a5e87604a3a7a
--- /dev/null
+++ b/assets/README.md
@@ -0,0 +1,46 @@
+# Projekt CiS-Projekt 2021/22
+
+Citation network made with **d3.js**
+
+## Usage
+### Input
+Json file **json\_text.json** in directory
+```json
+{
+ "nodes": [
+ {
+ "name": <title: string>,
+ "author": [<author1: string>, <author2: string>, ...],
+ "year": <date: tring>,
+ "journal": <journal: string>,
+ "doi": <doi: string>,
+ "group": <"input"/"height"/"depth">,
+ "citations": <citation: int>
+ }, ...
+ ],
+ "links": [
+ {
+ "source": <doi: string>,
+ "target": <doi: string>
+ }, ...
+ ]
+}
+```
+
+### Display the Citation Network
+Starting a python web server:
+```sh
+ cd <path to file> &&python3 -m http.server <port>
+```
+Access to the server:
+[http://0.0.0.0/:\<port\>](http://0.0.0.0/:<port>)
+
+## Files in Directory
+- **index.html**: webpage
+- **cn.js**: javascript code for force-directed graph, text elements and legend
+- **json_text.json**: example data
+
+
+## Authors
+- Katja Ehlers
+- Merle Stahl
\ No newline at end of file
diff --git a/count_journal.py b/count_journal.py
deleted file mode 100755
index 13886a2e7badf339bdd23475f7d3de713329f472..0000000000000000000000000000000000000000
--- a/count_journal.py
+++ /dev/null
@@ -1,40 +0,0 @@
-#!/usr/bin/env python3
-
-from input.interface import InputInterface as Input
-
-def count_journals(url: str):
- inter = Input()
- pub = inter.get_publication(url)
-
- if pub.citations:
- for citation in pub.citations:
- journal = citation.journal
- if journal in cit:
- cit[journal] += 1
- else:
- cit[journal] = 1
-
- if pub.references:
- for reference in pub.references:
- journal = reference.journal
- if journal in cit:
- cit[journal] += 1
- else:
- cit[journal] = 1
-
-if __name__ == "__main__":
- cit = {}
-
- count_journals("https://doi.org/10.1021/acs.jcim.1c00203")
- count_journals("https://doi.org/10.1021/acs.jcim.6b00561")
- count_journals("https://doi.org/10.1021/acs.jcim.6b00613")
- count_journals("https://doi.org/10.1021/acs.jcim.1c00917")
- count_journals("https://doi.org/10.1021/acs.jmedchem.0c01332")
- #count_journals("https://pubs.acs.org/doi/10.1021/acs.biochem.1c00290")
- #count_journals("https://pubs.acs.org/doi/10.1021/acsenvironau.1c00007")
- #count_journals("https://pubs.acs.org/doi/10.1021/acs.biochem.7b01162")
-
- cit = dict(sorted(cit.items(), key=lambda item: item[1]))
- for journal in cit:
- if journal != "":
- print(f'{journal}: {cit[journal]}')
diff --git a/example_input.py b/example_input.py
deleted file mode 100755
index c9bca4189fce4c1fd0a0dfc42ef4e517baa5f406..0000000000000000000000000000000000000000
--- a/example_input.py
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/usr/bin/env python3
-
-from input.interface import InputInterface as Input
-
-def main(url: str):
- i = Input()
- #print(i.get_publication(url))
- print(i.get_pub_light(url))
- # print(i.get_supported_fetchers()) Useless because all classes are called the same
-
-if __name__ == "__main__":
- #main("https://doi.org/10.1021/acs.jcim.1c0023")
- main("https://doi.org/10.1021/acs.jcim.5b00332")
diff --git a/input/.VSCodeCounter/2021-12-24_13-19-53/details.md b/input/.VSCodeCounter/2021-12-24_13-19-53/details.md
deleted file mode 100644
index 92cb09557c39cd9ebb3217836e595927a3d7ae52..0000000000000000000000000000000000000000
--- a/input/.VSCodeCounter/2021-12-24_13-19-53/details.md
+++ /dev/null
@@ -1,28 +0,0 @@
-# Details
-
-Date : 2021-12-24 13:19:53
-
-Directory c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input
-
-Total : 13 files, 686 codes, 251 comments, 161 blanks, all 1098 lines
-
-[summary](results.md)
-
-## Files
-| filename | language | code | comment | blank | total |
-| :--- | :--- | ---: | ---: | ---: | ---: |
-| [README.md](/README.md) | Markdown | 38 | 0 | 12 | 50 |
-| [__init__.py](/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [get/__init__.py](/get/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [get/acs.py](/get/acs.py) | Python | 105 | 41 | 47 | 193 |
-| [get/journal_fetcher.py](/get/journal_fetcher.py) | Python | 59 | 25 | 12 | 96 |
-| [get/nature.py](/get/nature.py) | Python | 21 | 23 | 16 | 60 |
-| [get/template_.py](/get/template_.py) | Python | 10 | 31 | 10 | 51 |
-| [interface.py](/interface.py) | Python | 46 | 47 | 21 | 114 |
-| [publication.py](/publication.py) | Python | 80 | 49 | 15 | 144 |
-| [requirements.txt](/requirements.txt) | pip requirements | 2 | 0 | 0 | 2 |
-| [test/__init__.py](/test/__init__.py) | Python | 0 | 0 | 1 | 1 |
-| [test/test_acs.py](/test/test_acs.py) | Python | 285 | 7 | 11 | 303 |
-| [test/test_input.py](/test/test_input.py) | Python | 40 | 28 | 14 | 82 |
-
-[summary](results.md)
\ No newline at end of file
diff --git a/input/.VSCodeCounter/2021-12-24_13-19-53/results.csv b/input/.VSCodeCounter/2021-12-24_13-19-53/results.csv
deleted file mode 100644
index 77ac68ce0727afa9a371eae468a7fc13e6cb360c..0000000000000000000000000000000000000000
--- a/input/.VSCodeCounter/2021-12-24_13-19-53/results.csv
+++ /dev/null
@@ -1,15 +0,0 @@
-"filename", "language", "Python", "pip requirements", "Markdown", "comment", "blank", "total"
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\README.md", "Markdown", 0, 0, 38, 0, 12, 50
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\__init__.py", "Python", 0, 0, 0, 0, 1, 1
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\__init__.py", "Python", 0, 0, 0, 0, 1, 1
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\acs.py", "Python", 105, 0, 0, 41, 47, 193
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\journal_fetcher.py", "Python", 59, 0, 0, 25, 12, 96
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\nature.py", "Python", 21, 0, 0, 23, 16, 60
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\template_.py", "Python", 10, 0, 0, 31, 10, 51
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\interface.py", "Python", 46, 0, 0, 47, 21, 114
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\publication.py", "Python", 80, 0, 0, 49, 15, 144
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\requirements.txt", "pip requirements", 0, 2, 0, 0, 0, 2
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\test\__init__.py", "Python", 0, 0, 0, 0, 1, 1
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\test\test_acs.py", "Python", 285, 0, 0, 7, 11, 303
-"c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\test\test_input.py", "Python", 40, 0, 0, 28, 14, 82
-"Total", "-", 646, 2, 38, 251, 161, 1098
\ No newline at end of file
diff --git a/input/.VSCodeCounter/2021-12-24_13-19-53/results.md b/input/.VSCodeCounter/2021-12-24_13-19-53/results.md
deleted file mode 100644
index dd9bc10e465df85327b145db801d55454660abce..0000000000000000000000000000000000000000
--- a/input/.VSCodeCounter/2021-12-24_13-19-53/results.md
+++ /dev/null
@@ -1,25 +0,0 @@
-# Summary
-
-Date : 2021-12-24 13:19:53
-
-Directory c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input
-
-Total : 13 files, 686 codes, 251 comments, 161 blanks, all 1098 lines
-
-[details](details.md)
-
-## Languages
-| language | files | code | comment | blank | total |
-| :--- | ---: | ---: | ---: | ---: | ---: |
-| Python | 11 | 646 | 251 | 149 | 1,046 |
-| Markdown | 1 | 38 | 0 | 12 | 50 |
-| pip requirements | 1 | 2 | 0 | 0 | 2 |
-
-## Directories
-| path | files | code | comment | blank | total |
-| :--- | ---: | ---: | ---: | ---: | ---: |
-| . | 13 | 686 | 251 | 161 | 1,098 |
-| get | 5 | 195 | 120 | 86 | 401 |
-| test | 3 | 325 | 35 | 26 | 386 |
-
-[details](details.md)
\ No newline at end of file
diff --git a/input/.VSCodeCounter/2021-12-24_13-19-53/results.txt b/input/.VSCodeCounter/2021-12-24_13-19-53/results.txt
deleted file mode 100644
index 8a04330b72336fd3ca4b5f8ca7203efb17167ca9..0000000000000000000000000000000000000000
--- a/input/.VSCodeCounter/2021-12-24_13-19-53/results.txt
+++ /dev/null
@@ -1,41 +0,0 @@
-Date : 2021-12-24 13:19:53
-Directory : c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input
-Total : 13 files, 686 codes, 251 comments, 161 blanks, all 1098 lines
-
-Languages
-+------------------+------------+------------+------------+------------+------------+
-| language | files | code | comment | blank | total |
-+------------------+------------+------------+------------+------------+------------+
-| Python | 11 | 646 | 251 | 149 | 1,046 |
-| Markdown | 1 | 38 | 0 | 12 | 50 |
-| pip requirements | 1 | 2 | 0 | 0 | 2 |
-+------------------+------------+------------+------------+------------+------------+
-
-Directories
-+---------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| path | files | code | comment | blank | total |
-+---------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-| . | 13 | 686 | 251 | 161 | 1,098 |
-| get | 5 | 195 | 120 | 86 | 401 |
-| test | 3 | 325 | 35 | 26 | 386 |
-+---------------------------------------------------------------------------+------------+------------+------------+------------+------------+
-
-Files
-+---------------------------------------------------------------------------+------------------+------------+------------+------------+------------+
-| filename | language | code | comment | blank | total |
-+---------------------------------------------------------------------------+------------------+------------+------------+------------+------------+
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\README.md | Markdown | 38 | 0 | 12 | 50 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\acs.py | Python | 105 | 41 | 47 | 193 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\journal_fetcher.py | Python | 59 | 25 | 12 | 96 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\nature.py | Python | 21 | 23 | 16 | 60 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\get\template_.py | Python | 10 | 31 | 10 | 51 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\interface.py | Python | 46 | 47 | 21 | 114 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\publication.py | Python | 80 | 49 | 15 | 144 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\requirements.txt | pip requirements | 2 | 0 | 0 | 2 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\test\__init__.py | Python | 0 | 0 | 1 | 1 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\test\test_acs.py | Python | 285 | 7 | 11 | 303 |
-| c:\Users\Gamin\git\ci-s-projekt-verarbeitung\input\test\test_input.py | Python | 40 | 28 | 14 | 82 |
-| Total | | 686 | 251 | 161 | 1,098 |
-+---------------------------------------------------------------------------+------------------+------------+------------+------------+------------+
\ No newline at end of file
diff --git a/input/get/__pycache__/__init__.cpython-38.pyc b/input/get/__pycache__/__init__.cpython-38.pyc
deleted file mode 100644
index 52f5d64aa3f72e25accf523fb850635617afbf5e..0000000000000000000000000000000000000000
Binary files a/input/get/__pycache__/__init__.cpython-38.pyc and /dev/null differ
diff --git a/input/get/__pycache__/acs.cpython-38.pyc b/input/get/__pycache__/acs.cpython-38.pyc
deleted file mode 100644
index 78c1fb0c8b885e90285224e745b09af56faf9b01..0000000000000000000000000000000000000000
Binary files a/input/get/__pycache__/acs.cpython-38.pyc and /dev/null differ
diff --git a/input/get/__pycache__/journal_fetcher.cpython-38.pyc b/input/get/__pycache__/journal_fetcher.cpython-38.pyc
deleted file mode 100644
index af9bd12b47a0bae4c1683adf78d92884b7e51193..0000000000000000000000000000000000000000
Binary files a/input/get/__pycache__/journal_fetcher.cpython-38.pyc and /dev/null differ
diff --git a/input/get/__pycache__/nature.cpython-38.pyc b/input/get/__pycache__/nature.cpython-38.pyc
deleted file mode 100644
index ca8c9862b7234c55e49b676136ab64a62f91e58b..0000000000000000000000000000000000000000
Binary files a/input/get/__pycache__/nature.cpython-38.pyc and /dev/null differ
diff --git a/start_script.py b/start_script.py
deleted file mode 100644
index 9e674cfb87b30c403c641119bc4cc344e2bc6acc..0000000000000000000000000000000000000000
--- a/start_script.py
+++ /dev/null
@@ -1,19 +0,0 @@
-import sys
-import gc
-from pathlib import Path
-from verarbeitung.process_main import Processing
-#from verarbeitung.dev_files.print_graph_test import try_known_publications, try_delete_nodes
-
-
-doi_list = []
-#doi_list.append('https://pubs.acs.org/doi/10.1021/acs.jcim.9b00249')
-#doi_list.append('https://doi.org/10.1021/acs.jcim.9b00249')
-#doi_list.append('https://pubs.acs.org/doi/10.1021/acs.jcim.1c00203')
-doi_list.append('https://doi.org/10.1021/acs.jmedchem.0c01332')
-doi_list.append('https://pubs.acs.org/doi/10.1021/acs.jcim.6b00709')
-error_list = Processing(doi_list, 2, 2, 'test.json')
-print(error_list)
-
-del doi_list
-del error_list
-gc.collect()
diff --git a/test.json b/test.json
deleted file mode 100644
index 4ae068da7d62b6aca3b24f94807ac9404404f08f..0000000000000000000000000000000000000000
--- a/test.json
+++ /dev/null
@@ -1 +0,0 @@
-{"nodes": [{"doi": "https://doi.org/10.1021/acs.jmedchem.0c01332", "name": "Evolution of Novartis\u2019 Small Molecule Screening Deck Design", "author": ["Ansgar Schuffenhauer", "Nadine Schneider", "Samuel Hintermann", "Douglas Auld", "Jutta Blank", "Simona Cotesta", "Caroline Engeloch", "Nikolas Fechner", "Christoph Gaul", "Jerome Giovannoni", "Johanna Jansen", "John Joslin", "Philipp Krastel", "Eugen Lounkine", "John Manchester", "Lauren G. Monovich", "Anna Paola Pelliccioli", "Manuel Schwarze", "Michael D. Shultz", "Nikolaus Stiefl", "Daniel K. Baeschlin"], "year": "November 3, 2020", "journal": "Journal of Medicinal Chemistry", "group": "Input", "depth": 0, "citations": 8}, {"doi": "https://doi.org/10.1021/acsmedchemlett.1c00251", "name": "The Growing Importance of Chirality in 3D Chemical Space Exploration and Modern Drug Discovery Approaches for Hit-ID", "author": ["Ilaria Proietti Silvestri", "Paul J. J. Colbon"], "year": "July 16, 2021", "journal": "ACS Med. Chem. Lett.", "group": "Citedby", "depth": 1, "citations": 0}, {"doi": "https://doi.org/10.1021/acs.jmedchem.1c00416", "name": "Target-Based Evaluation of \u201cDrug-Like\u201d Properties and Ligand Efficiencies", "author": ["Paul D. Leeson", "A. Patricia Bento", "Anna Gaulton", "Anne Hersey", "Emma J. Manners", "Chris J. Radoux", "Andrew R. Leach"], "year": "May 13, 2021", "journal": "Journal of Medicinal Chemistry", "group": "Citedby", "depth": 1, "citations": 0}, {"doi": "https://doi.org/10.1021/acs.jcim.6b00709", "name": "Matched Molecular Series: Measuring SAR Similarity", "author": ["Emanuel S. R. Ehmki", "Christian Kramer"], "year": "May 1, 2017", "journal": "Journal of Chemical Information and Modeling", "group": "Input", "depth": 0, "citations": 5}, {"doi": "https://doi.org/10.1021/acs.jcim.0c00269", "name": "Matched Molecular Series Analysis for ADME Property Prediction", "author": ["Mahendra Awale", "Sereina Riniker", "Christian Kramer"], "year": "May 5, 2020", "journal": "Journal of Chemical Information and Modeling", "group": "Citedby", "depth": 1, "citations": 6}, {"doi": "https://doi.org/10.1021/acs.jcim.0c00290", "name": "Identification of Bioisosteric Substituents by a Deep Neural Network", "author": ["Peter Ertl"], "year": "June 15, 2020", "journal": "Journal of Chemical Information and Modeling", "group": "Citedby", "depth": 2, "citations": 2}], "links": [{"source": "https://doi.org/10.1021/acsmedchemlett.1c00251", "target": "https://doi.org/10.1021/acs.jmedchem.0c01332"}, {"source": "https://doi.org/10.1021/acs.jmedchem.1c00416", "target": "https://doi.org/10.1021/acs.jmedchem.0c01332"}, {"source": "https://doi.org/10.1021/acs.jcim.0c00269", "target": "https://doi.org/10.1021/acs.jcim.6b00709"}, {"source": "https://doi.org/10.1021/acs.jcim.0c00290", "target": "https://doi.org/10.1021/acs.jcim.0c00269"}]}
\ No newline at end of file