diff --git a/cami_src/experiment2_run.py b/cami_src/experiment2_run.py new file mode 100755 index 0000000000000000000000000000000000000000..4dc690dc97c540aa1c7a2a814538d97158937f86 --- /dev/null +++ b/cami_src/experiment2_run.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +import pwd +import sys +from os import chdir +import subprocess + + +chdir((sys.argv[0].rsplit('/', 1))[0]) +networkfile = "../data/input/networks/biogrid_all_4.4.217.tsv" +for seedfile in "../data/input/seeds/ex1_seeds/adhd.txt ../data/input/seeds/ex1_seeds/alcl.txt ../data/input/seeds/ex1_seeds/alzheimer.txt ../data/input/seeds/ex1_seeds/aplastic_anemia-inherited.txt ../data/input/seeds/ex1_seeds/asd_autism.txt ../data/input/seeds/ex1_seeds/asthma.txt ../data/input/seeds/ex1_seeds/cerebellar\ ataxia.txt ../data/input/seeds/ex1_seeds/cystic_fibrosis.txt ../data/input/seeds/ex1_seeds/diabetes_mellitus.txt ../data/input/seeds/ex1_seeds/example_seeds.txt ../data/input/seeds/ex1_seeds/heart_failure.txt ../data/input/seeds/ex1_seeds/heart_valve_disorder.txt ../data/input/seeds/ex1_seeds/hemophilia.txt ../data/input/seeds/ex1_seeds/hereditary_breast_cancer.txt ../data/input/seeds/ex1_seeds/joubert_syndrome.txt ../data/input/seeds/ex1_seeds/name.txt ../data/input/seeds/ex1_seeds/nsclc.txt ../data/input/seeds/ex1_seeds/obesity_disorder.txt ../data/input/seeds/ex1_seeds/ovarian_cancer.txt ../data/input/seeds/ex1_seeds/parkinson.txt ../data/input/seeds/ex1_seeds/sickle_cell_anemia.txt ../data/input/seeds/ex1_seeds/visual_epilepsy.txt".split(' '): + identifier = seedfile.rsplit('.',1)[0].rsplit('/',1)[1] + identifier = f'{identifier}_biogrid_all' + command = f'./cami.py -n {networkfile} -s {seedfile} -id {identifier} -img -p --f;' + subprocess.call(command, shell=True) \ No newline at end of file