From 6599dd6eba527b6fbefeaa6334449fdd08e47eec Mon Sep 17 00:00:00 2001 From: Mia Le <mle@poel.zbh.uni-hamburg.de> Date: Mon, 16 Jan 2023 19:44:12 +0100 Subject: [PATCH] changed code --- cami_src/experiment2_run.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/cami_src/experiment2_run.py b/cami_src/experiment2_run.py index 4dc690d..4e40b74 100755 --- a/cami_src/experiment2_run.py +++ b/cami_src/experiment2_run.py @@ -7,8 +7,8 @@ import subprocess chdir((sys.argv[0].rsplit('/', 1))[0]) networkfile = "../data/input/networks/biogrid_all_4.4.217.tsv" -for seedfile in "../data/input/seeds/ex1_seeds/adhd.txt ../data/input/seeds/ex1_seeds/alcl.txt ../data/input/seeds/ex1_seeds/alzheimer.txt ../data/input/seeds/ex1_seeds/aplastic_anemia-inherited.txt ../data/input/seeds/ex1_seeds/asd_autism.txt ../data/input/seeds/ex1_seeds/asthma.txt ../data/input/seeds/ex1_seeds/cerebellar\ ataxia.txt ../data/input/seeds/ex1_seeds/cystic_fibrosis.txt ../data/input/seeds/ex1_seeds/diabetes_mellitus.txt ../data/input/seeds/ex1_seeds/example_seeds.txt ../data/input/seeds/ex1_seeds/heart_failure.txt ../data/input/seeds/ex1_seeds/heart_valve_disorder.txt ../data/input/seeds/ex1_seeds/hemophilia.txt ../data/input/seeds/ex1_seeds/hereditary_breast_cancer.txt ../data/input/seeds/ex1_seeds/joubert_syndrome.txt ../data/input/seeds/ex1_seeds/name.txt ../data/input/seeds/ex1_seeds/nsclc.txt ../data/input/seeds/ex1_seeds/obesity_disorder.txt ../data/input/seeds/ex1_seeds/ovarian_cancer.txt ../data/input/seeds/ex1_seeds/parkinson.txt ../data/input/seeds/ex1_seeds/sickle_cell_anemia.txt ../data/input/seeds/ex1_seeds/visual_epilepsy.txt".split(' '): +for seedfile in "../data/input/seeds/ex1_seeds/adhd.txt ../data/input/seeds/ex1_seeds/alcl.txt ../data/input/seeds/ex1_seeds/alzheimer.txt ../data/input/seeds/ex1_seeds/aplastic_anemia-inherited.txt ../data/input/seeds/ex1_seeds/asd_autism.txt ../data/input/seeds/ex1_seeds/asthma.txt ../data/input/seeds/ex1_seeds/cerebellar_ataxia.txt ../data/input/seeds/ex1_seeds/cystic_fibrosis.txt ../data/input/seeds/ex1_seeds/diabetes_mellitus.txt ../data/input/seeds/ex1_seeds/example_seeds.txt ../data/input/seeds/ex1_seeds/heart_failure.txt ../data/input/seeds/ex1_seeds/heart_valve_disorder.txt ../data/input/seeds/ex1_seeds/hemophilia.txt ../data/input/seeds/ex1_seeds/hereditary_breast_cancer.txt ../data/input/seeds/ex1_seeds/joubert_syndrome.txt ../data/input/seeds/ex1_seeds/name.txt ../data/input/seeds/ex1_seeds/nsclc.txt ../data/input/seeds/ex1_seeds/obesity_disorder.txt ../data/input/seeds/ex1_seeds/ovarian_cancer.txt ../data/input/seeds/ex1_seeds/parkinson.txt ../data/input/seeds/ex1_seeds/sickle_cell_anemia.txt ../data/input/seeds/ex1_seeds/visual_epilepsy.txt".split(' '): identifier = seedfile.rsplit('.',1)[0].rsplit('/',1)[1] identifier = f'{identifier}_biogrid_all' command = f'./cami.py -n {networkfile} -s {seedfile} -id {identifier} -img -p --f;' - subprocess.call(command, shell=True) \ No newline at end of file + subprocess.call(command, shell=True) -- GitLab