From b6b60fab892fb0f4a3cb7eef22aa10d5dc545c3e Mon Sep 17 00:00:00 2001
From: bay9355 <mia.le@studium.uni-hamburg.de>
Date: Sat, 15 Apr 2023 22:43:55 +0200
Subject: [PATCH] added digest save results
---
.../seed_variation_script.py | 20 +++++++++----------
1 file changed, 10 insertions(+), 10 deletions(-)
diff --git a/cami_src/evaluation_scripts/seed_variation_script.py b/cami_src/evaluation_scripts/seed_variation_script.py
index baa420c..5fdca37 100644
--- a/cami_src/evaluation_scripts/seed_variation_script.py
+++ b/cami_src/evaluation_scripts/seed_variation_script.py
@@ -52,13 +52,13 @@ def make_seedvariation(cami, n_iterations, removal_frac=0.2, vis=False, plot=Fal
for tool in prediction_tools:
res_table.write(f'\t{tool}_msr_ks_pvalue')
- # with open(os.path.join(cami.tmp_dir, f'{used_tools[0]}_{cami.uid}_relevance_scores.tsv'), 'r') as f:
- # for line in f:
- # val_name = line.split('\t')[0]
- # redisc_table.write(f'\t{val_name}')
- # res_table.write('\n')
- # result dictionaries of the form {tool:list(value for each iteration)}
+ with open(os.path.join(cami.tmp_dir, f'{used_tools[0]}_{cami.uid}_relevance_scores.tsv'), 'r') as f:
+ for line in f:
+ val_name = line.split('\t')[0]
+ redisc_table.write(f'\t{val_name}')
+ res_table.write('\n')
+ #result dictionaries of the form {tool:list(value for each iteration)}
tp_rate_dict = {k:list() for k in used_tools}
redisc_rate_dict = {k:list() for k in used_tools}
module_size_dict = {k:list() for k in used_tools}
@@ -142,10 +142,10 @@ def make_seedvariation(cami, n_iterations, removal_frac=0.2, vis=False, plot=Fal
list(module_size_dict[pred_tool]))
res_table.write(f'\t{p_val}')
- # with open(os.path.join(cami.tmp_dir, f'{tool}_{identifier}_relevance_scores.tsv'), 'r') as f:
- # for line in f:
- # rel_score = line.split('\t')[1].strip()
- # res_table.write(f'\t{rel_score}')
+ with open(os.path.join(cami.tmp_dir, f'{tool}_{identifier}_relevance_scores.tsv'), 'r') as f:
+ for line in f:
+ rel_score = line.split('\t')[1].strip()
+ res_table.write(f'\t{rel_score}')
res_table.write('\n')
print(f'Result tables are saved in the following locations:')
--
GitLab