From cfc3bf6a165cb367596b1a558da76dcd938a2b17 Mon Sep 17 00:00:00 2001 From: bay9355 <mia.le@studium.uni-hamburg.de> Date: Sat, 11 Mar 2023 16:29:40 +0100 Subject: [PATCH] seed variation configuration --- cami_src/seed_variation_2.py | 13 +++++++++++++ cami_src/seed_variationconf | 31 +++++++++++++++++++++++++++++++ 2 files changed, 44 insertions(+) create mode 100755 cami_src/seed_variation_2.py create mode 100644 cami_src/seed_variationconf diff --git a/cami_src/seed_variation_2.py b/cami_src/seed_variation_2.py new file mode 100755 index 0000000..1fdd76b --- /dev/null +++ b/cami_src/seed_variation_2.py @@ -0,0 +1,13 @@ +#!/usr/bin/env python3 +import sys +from os.path import basename +import subprocess, random +import matplotlib.pyplot as plt + +network = sys.argv[1] +seedfiles = sys.argv[2:] +config = 'seed_variationconf' +for seeds in seedfiles: + identifier = basename(seeds).rsplit('.')[0] + '_seedvar_different_consensus_approaches' + command = f'./cami.py -n {network} -s {seeds} -id {identifier} -v -conf {config} -var -f;' + subprocess.call(command, shell=True) \ No newline at end of file diff --git a/cami_src/seed_variationconf b/cami_src/seed_variationconf new file mode 100644 index 0000000..665380c --- /dev/null +++ b/cami_src/seed_variationconf @@ -0,0 +1,31 @@ +# ======================================== +# FileName: camiconf +# Date: 21:00 10.April.2022 +# Author: Marcos Chow Castro +# Email: mctechnology170318@gmail.com +# GitHub: https://github.com/mctechnology17 +# Brief: main configuration for cami +# ========================================= + +[domino] +visualization_flag = False +output_name = 'modules.out' +para = 1 +c = 'false' + +[diamond] +alpha : 1 +pred_factor : 3 +max_preds : 200 +p_value_cutoff : 1e-05 + +[robust] +initial_fraction = 0.25 +reduction_factor = 0.9 +number_steiner_trees = 30 +threshold = 0.1 + +[cami] +seed_score = 10.0 + +# vim: set fdm=marker: \ No newline at end of file -- GitLab