diff --git a/cami_src/cami_suite.py b/cami_src/cami_suite.py index 60fcfd3951934fedf6ba40d688d18186321b46a0..f3a3cc2be292f93cceff8026158cdb48e8b8af16 100644 --- a/cami_src/cami_suite.py +++ b/cami_src/cami_suite.py @@ -202,7 +202,12 @@ class cami(): ref_id='entrez') if validation_results['status'] == 'ok': biodigest.single_validation.save_results(validation_results, f'{result_set}_{self.uid}', self.output_dir) - + biodigest.evaluation.d_utils.plotting_utils.create_plots(results=validation_results, + mode='set-set', + tar=set(self.result_gene_sets[result_set]), + tar_id='entrez', + out_dir=self.output_dir, + prefix=f'{result_set}_{self.uid}') def run_threaded_tool(self, tool, pred_sets): """run a tool in one thread and save the results into a dictionary pred_sets diff --git a/data/input/seeds/ex1_seeds/cerebellar_ataxia.txt b/data/input/seeds/ex1_seeds/cerebellar_ataxia.txt new file mode 100644 index 0000000000000000000000000000000000000000..115a4e04ac7afb970b5bdb7cf808d45033977a55 --- /dev/null +++ b/data/input/seeds/ex1_seeds/cerebellar_ataxia.txt @@ -0,0 +1,165 @@ +EntrezID +506 +403 +478 +492 +57231 +23646 +23533 +23322 +23345 +23203 +23247 +23261 +23152 +767 +773 +9640 +23116 +23064 +23090 +9711 +9731 +9786 +9474 +9570 +9150 +8913 +4867 +4758 +4547 +57545 +4287 +57410 +57465 +4311 +10531 +10533 +10525 +10528 +10479 +10464 +10273 +153241 +3748 +3746 +3708 +407973 +8481 +28982 +7957 +64374 +54903 +54982 +54974 +54806 +54840 +7436 +378884 +7515 +339453 +7274 +7222 +7248 +124997 +3309 +3312 +3475 +10939 +3162 +10715 +374654 +84942 +84823 +2895 +94008 +2923 +2911 +2672 +60481 +2420 +25814 +25894 +11284 +22 +6548 +26123 +343641 +6712 +6315 +6314 +6311 +6310 +79867 +79876 +79848 +65250 +55775 +79600 +65062 +2196 +79581 +79583 +2259 +2296 +338435 +2395 +2332 +80210 +55280 +80184 +255928 +55129 +55187 +6785 +84991 +6908 +1728 +1786 +100359393 +1822 +1593 +1600 +85502 +1106 +1167 +1200 +85300 +200403 +51741 +51763 +51761 +440193 +51684 +165918 +51524 +51567 +200894 +1938 +26278 +51259 +5274 +342371 +317662 +5034 +5147 +5190 +5173 +27072 +27077 +146057 +9851 +724066 +56978 +56997 +146227 +103753527 +91147 +56623 +56652 +100188768 +5521 +5582 +95681 +5631 +5621 \ No newline at end of file