diff --git a/README.md b/README.md index 1ada4d6938535291f744d4c55c428ffb3a821577..b1dc0875c009d090c5635b592f868cb504303e39 100644 --- a/README.md +++ b/README.md @@ -2,12 +2,19 @@ A repository for the analysis of tissue-specific transcriptomes and 16S data for Elbe estuarine Sander lucioperca The Analysis splits into 5 parts + 1: SL_Linux_16.01.2024.Rmd contains RNAseq & 16S Dataprocessing-Pipeline for Linux-HPC 2: SL_16S_16.01.24_Paper.Rmd contains the full 16S Analysis in R + 3: SL_RNA_16.01.24_Paper.Rmd contain the full RNAseq Analysis in R + 4 & 5: SL_WGCNA_Part1_16.01.2024_Paper.Rmd & SL_WGCNA_Part2_16.01.2024_Paper.Rmd contain the Network Analysis Pipeline in R Additional files: -SL_Functions_16.01.24_Paper.Rmd is a long Functions-File that has to be saved in the R-directory and loaded in section ## 1.2 Functions in every -packrat.lock includes a Package-Version +SL_Functions_16.01.24_Paper.Rmd is a long Functions-File that has to be saved in the R-directory and loaded in section ## 1.2 Functions in every .rmd +There Exists a Packrat-bundle for private library sharing that has to be requested due to size limitation +Every .rmd is accompanied by a markdown .html that includes a subset of plots and results + +Sequence data are deposited in the ENA Sequence Read archive under study PRJEB71116 +