diff --git a/README.md b/README.md index b1dc0875c009d090c5635b592f868cb504303e39..4445634d2ec70e3f043d795caab966785cd9b728 100644 --- a/README.md +++ b/README.md @@ -3,18 +3,19 @@ A repository for the analysis of tissue-specific transcriptomes and 16S data for The Analysis splits into 5 parts -1: SL_Linux_16.01.2024.Rmd contains RNAseq & 16S Dataprocessing-Pipeline for Linux-HPC +1: RNAseq & 16S Dataprocessing-Pipeline used on Linux-HPC: SL_Linux_16.01.2024.Rmd -2: SL_16S_16.01.24_Paper.Rmd contains the full 16S Analysis in R +2: Bacteria Metabarcoding Analysis based in V3V4 16S in R: SL_16S_16.01.24_Paper.Rmd -3: SL_RNA_16.01.24_Paper.Rmd contain the full RNAseq Analysis in R +3: Transcriptome analysis for tissue specific RNAseq in R: SL_RNA_16.01.24_Paper.Rmd -4 & 5: SL_WGCNA_Part1_16.01.2024_Paper.Rmd & SL_WGCNA_Part2_16.01.2024_Paper.Rmd contain the Network Analysis Pipeline in R +4 & 5: Network Analysis Pipeline in R: SL_WGCNA_Part1_16.01.2024_Paper.Rmd & SL_WGCNA_Part2_16.01.2024_Paper.Rmd Additional files: +Every .rmd is accompanied by a markdown .html that includes a subset of plots and results + SL_Functions_16.01.24_Paper.Rmd is a long Functions-File that has to be saved in the R-directory and loaded in section ## 1.2 Functions in every .rmd There Exists a Packrat-bundle for private library sharing that has to be requested due to size limitation -Every .rmd is accompanied by a markdown .html that includes a subset of plots and results Sequence data are deposited in the ENA Sequence Read archive under study PRJEB71116