From cfa2522ea1f3fb536bbc6bce14a7382d5ca38cdb Mon Sep 17 00:00:00 2001 From: Raphael Koll <82929865+vollkorrn@users.noreply.github.com> Date: Tue, 23 Jan 2024 15:24:22 -0300 Subject: [PATCH] Update README.md --- README.md | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index b1dc087..4445634 100644 --- a/README.md +++ b/README.md @@ -3,18 +3,19 @@ A repository for the analysis of tissue-specific transcriptomes and 16S data for The Analysis splits into 5 parts -1: SL_Linux_16.01.2024.Rmd contains RNAseq & 16S Dataprocessing-Pipeline for Linux-HPC +1: RNAseq & 16S Dataprocessing-Pipeline used on Linux-HPC: SL_Linux_16.01.2024.Rmd -2: SL_16S_16.01.24_Paper.Rmd contains the full 16S Analysis in R +2: Bacteria Metabarcoding Analysis based in V3V4 16S in R: SL_16S_16.01.24_Paper.Rmd -3: SL_RNA_16.01.24_Paper.Rmd contain the full RNAseq Analysis in R +3: Transcriptome analysis for tissue specific RNAseq in R: SL_RNA_16.01.24_Paper.Rmd -4 & 5: SL_WGCNA_Part1_16.01.2024_Paper.Rmd & SL_WGCNA_Part2_16.01.2024_Paper.Rmd contain the Network Analysis Pipeline in R +4 & 5: Network Analysis Pipeline in R: SL_WGCNA_Part1_16.01.2024_Paper.Rmd & SL_WGCNA_Part2_16.01.2024_Paper.Rmd Additional files: +Every .rmd is accompanied by a markdown .html that includes a subset of plots and results + SL_Functions_16.01.24_Paper.Rmd is a long Functions-File that has to be saved in the R-directory and loaded in section ## 1.2 Functions in every .rmd There Exists a Packrat-bundle for private library sharing that has to be requested due to size limitation -Every .rmd is accompanied by a markdown .html that includes a subset of plots and results Sequence data are deposited in the ENA Sequence Read archive under study PRJEB71116 -- GitLab