From 05e025b2dbd681c4d55da0651b8e63240b955c14 Mon Sep 17 00:00:00 2001
From: "Hartung, Michael" <michael.hartung@uni-hamburg.de>
Date: Mon, 13 Feb 2023 14:51:52 +0100
Subject: [PATCH] targeet nodes without seeds in multisteiner
Former-commit-id: 2c41558490cef50c478d279fc88d07920432c088 [formerly 0d8e50317bf17a363aa12e2ae6f74cc3a54d5cdb]
Former-commit-id: 5114e5afe26fc8900512f08dd5ec84a553e540a0
---
tasks/multi_steiner.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/tasks/multi_steiner.py b/tasks/multi_steiner.py
index 1567d39..c6a8055 100755
--- a/tasks/multi_steiner.py
+++ b/tasks/multi_steiner.py
@@ -180,6 +180,7 @@ def multi_steiner(task_hook: TaskHook):
returned_edges.append((node, int(neighbor)))
accepted_nodes = [g.vertex_properties[node_name_attribute][node] for node in returned_nodes]
+ accepted_nodes_without_seeds = [g.vertex_properties[node_name_attribute][node] for node in returned_nodes if node not in seed_ids]
subgraph = {"nodes": accepted_nodes,
"edges": [{"from": g.vertex_properties[node_name_attribute][source], "to": g.vertex_properties[node_name_attribute][target]} for
source, target in returned_edges]}
@@ -188,7 +189,7 @@ def multi_steiner(task_hook: TaskHook):
task_hook.set_results({
"network": subgraph,
"node_attributes": {"node_types": node_types, "is_seed": is_seed},
- "target_nodes": accepted_nodes,
+ "target_nodes": accepted_nodes_without_seeds,
'gene_interaction_dataset': ppi_dataset,
'drug_interaction_dataset': pdi_dataset
})
--
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