From 2895cd79bbdbdfd211bf14ceadda1b158a376097 Mon Sep 17 00:00:00 2001
From: AndiMajore <andi.majore@googlemail.com>
Date: Mon, 21 Nov 2022 16:17:14 +0100
Subject: [PATCH] udpated licensed nedrex api url
---
drugstone/management/commands/populate_db.py | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/drugstone/management/commands/populate_db.py b/drugstone/management/commands/populate_db.py
index 5d5e859..497b3d1 100755
--- a/drugstone/management/commands/populate_db.py
+++ b/drugstone/management/commands/populate_db.py
@@ -86,8 +86,8 @@ class Command(BaseCommand):
def populate(kwargs):
- nedrex_api_url_open= "https://api.nedrex.net/open"
- nedrex_api_url_licenced = "https://nedrex-api-licenced.zbh.uni-hamburg.de/licensed"
+ nedrex_api_url_open = "https://api.nedrex.net/open"
+ nedrex_api_url_licensed = "https://api.nedrex.net/licensed"
data_dir = kwargs['data_dir']
@@ -102,7 +102,7 @@ def populate(kwargs):
cache = NodeCache()
update = True if kwargs['update'] else False
- importer = NedrexImporter(nedrex_api_url_licenced, nedrex_api_url_open, cache)
+ importer = NedrexImporter(nedrex_api_url_licensed, nedrex_api_url_open, cache)
populator = DataPopulator(cache)
total_n = 0
@@ -159,7 +159,7 @@ def populate(kwargs):
print('Importing PDIs from licenced NeDRexDB...')
n = NedrexImporter.import_drug_target_interactions(importer,
- DatasetLoader.get_drug_target_nedrex(nedrex_api_url_licenced, True),
+ DatasetLoader.get_drug_target_nedrex(nedrex_api_url_licensed, True),
update)
total_n += n
nedrex_update = True
@@ -187,7 +187,7 @@ def populate(kwargs):
print('Importing PDis from licenced NeDRexDB...')
n = NedrexImporter.import_protein_disorder_associations(importer,
DatasetLoader.get_protein_disorder_nedrex(
- nedrex_api_url_licenced, True),
+ nedrex_api_url_licensed, True),
update)
total_n += n
nedrex_update = True
@@ -204,7 +204,7 @@ def populate(kwargs):
print('Importing DrDis from licenced NeDRexDB...')
n = NedrexImporter.import_drug_disorder_indications(importer,
DatasetLoader.get_drug_disorder_nedrex(
- nedrex_api_url_licenced, True),
+ nedrex_api_url_licensed, True),
update)
total_n += n
nedrex_update = True
@@ -223,7 +223,7 @@ def populate(kwargs):
print(f'Imported {n} PPIs from unlicended NeDRexDB')
print('Importing PPIs from licenced NeDRexDB...')
n = NedrexImporter.import_protein_protein_interactions(importer,
- DatasetLoader.get_ppi_nedrex(nedrex_api_url_licenced,
+ DatasetLoader.get_ppi_nedrex(nedrex_api_url_licensed,
True),
update)
total_n += n
--
GitLab