diff --git a/.gitignore b/.gitignore index 5cf8a77ff94f1e17b16de9f744390a53430a1648..61228f1f1878cc5e7103c4c491bf97302e8b513c 100644 --- a/.gitignore +++ b/.gitignore @@ -13,4 +13,4 @@ docker-entrypoint.lock celerybeat-schedule.bak celerybeat-schedule.dat celerybeat-schedule.dir -docker-django.env.prod \ No newline at end of file +docker-django.env.prodnetworks.zip diff --git a/data/.gitignore b/data/.gitignore index 6f8cd6338cce6b214cdbe5a3677699e24a5707cf..ae48e51d88acadddbf79015cf95414cd3e379b9c 100644 --- a/data/.gitignore +++ b/data/.gitignore @@ -1 +1,2 @@ data.zip +networks.zip diff --git a/data/Networks/internal_APID_ChEMBL.gt b/data/Networks/internal_APID_ChEMBL.gt index dbf194d7be8fcd0cf29ee2cfdb9a1d68ff34a928..032446ca7ede33fe084dfa056d95eff8272212ce 100755 Binary files a/data/Networks/internal_APID_ChEMBL.gt and b/data/Networks/internal_APID_ChEMBL.gt differ diff --git a/data/Networks/internal_APID_DGIdb.gt b/data/Networks/internal_APID_DGIdb.gt index 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--git a/data/Networks/internal_BioGRID_DrugBank.gt b/data/Networks/internal_BioGRID_DrugBank.gt index 5c118ec5a15deef860878e4c71e8df4d15157bcf..54064adaf58c7f3122349410b1fccc57c7b1619a 100755 Binary files a/data/Networks/internal_BioGRID_DrugBank.gt and b/data/Networks/internal_BioGRID_DrugBank.gt differ diff --git a/data/Networks/internal_BioGRID_NeDRex.gt b/data/Networks/internal_BioGRID_NeDRex.gt index f4646e18f8d08d46a50a04ffc95c958295ab7fd7..66458e424b0ed7d7774c71ba82e8d4e94260c590 100644 Binary files a/data/Networks/internal_BioGRID_NeDRex.gt and b/data/Networks/internal_BioGRID_NeDRex.gt differ diff --git a/data/Networks/internal_IID_ChEMBL.gt b/data/Networks/internal_IID_ChEMBL.gt new file mode 100644 index 0000000000000000000000000000000000000000..159ddbf1ecde5e727a4b18512b5818974ccb687a Binary files /dev/null and b/data/Networks/internal_IID_ChEMBL.gt differ diff --git a/data/Networks/internal_IID_DGIdb.gt b/data/Networks/internal_IID_DGIdb.gt new file mode 100644 index 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a/data/Networks/internal_STRING_ChEMBL.gt b/data/Networks/internal_STRING_ChEMBL.gt index 8764ba363c3266bd1d17c350e2aa1219f1d4dc24..24757ee3844a6eddad59c5c43d5d259eecd52be6 100755 Binary files a/data/Networks/internal_STRING_ChEMBL.gt and b/data/Networks/internal_STRING_ChEMBL.gt differ diff --git a/data/Networks/internal_STRING_DGIdb.gt b/data/Networks/internal_STRING_DGIdb.gt index defa5a420e0650eb7ebedc3484f94923d48c33c1..0a4fd6bc0a33d2e3215598e716baff58bb95f53a 100755 Binary files a/data/Networks/internal_STRING_DGIdb.gt and b/data/Networks/internal_STRING_DGIdb.gt differ diff --git a/data/Networks/internal_STRING_Drug Central.gt b/data/Networks/internal_STRING_Drug Central.gt new file mode 100644 index 0000000000000000000000000000000000000000..b64994bfde11edda0ac1c51fe2f86e4f0db9975b Binary files /dev/null and b/data/Networks/internal_STRING_Drug Central.gt differ diff --git a/data/Networks/internal_STRING_DrugBank.gt b/data/Networks/internal_STRING_DrugBank.gt index bb58c6a793bcfa05a41c9b327bff95bf86f7d1a1..c88f6779138e383272a1b77fe396a017d8f55012 100755 Binary files a/data/Networks/internal_STRING_DrugBank.gt and b/data/Networks/internal_STRING_DrugBank.gt differ diff --git a/data/Networks/internal_STRING_NeDRex.gt b/data/Networks/internal_STRING_NeDRex.gt index 2da41415db9c7a8abf82cec3c04cff031e01f703..8456d82fbf4c48c0c43ade1903050a0996839d58 100644 Binary files a/data/Networks/internal_STRING_NeDRex.gt and b/data/Networks/internal_STRING_NeDRex.gt differ diff --git a/scripts/docker-entrypoint.sh b/scripts/docker-entrypoint.sh index ffdd55242e480af42f4e3533ecad1b266cd96a66..0dd02269e369dcd54822f21c539cd3a36cc755c4 100755 --- a/scripts/docker-entrypoint.sh +++ b/scripts/docker-entrypoint.sh @@ -1,19 +1,10 @@ #!/bin/bash -file="store/docker-entrypoint.lock" -# exit if entrypoint.lock exists to prevent new import of data every time docker is restarted - - - -#if ! test -f "$file"; then -# sh scripts/import-data.sh - python3 manage.py makemigrations drugstone - python3 manage.py migrate - python3 manage.py createfixtures - python3 manage.py cleanuptasks - python3 manage.py populate_db --all --update - python3 manage.py make_graphs -# touch $file -#fi +python3 manage.py makemigrations drugstone +python3 manage.py migrate +python3 manage.py createfixtures +python3 manage.py cleanuptasks +python3 manage.py populate_db --all --update +python3 manage.py make_graphs /usr/bin/supervisord -c "/etc/supervisor/conf.d/supervisord.conf"