From 97b037039820e8d284453331eb17e4e970481d1f Mon Sep 17 00:00:00 2001
From: AndiMajore <andi.majore@googlemail.com>
Date: Mon, 27 Jun 2022 19:44:47 +0200
Subject: [PATCH] commented out depricated functions
Former-commit-id: 65460ef473b1d445d97fa48f220b8adffdda27e9
---
.../management/includes/DataPopulator.py | 98 +++++++++----------
1 file changed, 49 insertions(+), 49 deletions(-)
diff --git a/drugstone/management/includes/DataPopulator.py b/drugstone/management/includes/DataPopulator.py
index f26a965..4056232 100755
--- a/drugstone/management/includes/DataPopulator.py
+++ b/drugstone/management/includes/DataPopulator.py
@@ -31,55 +31,55 @@ class DataPopulator:
for disorder in models.Disorder.objects.all():
self.disorders[disorder.mondo_id]=disorder
- def populate_proteins(self) -> int:
- """ Populates the Protein table in the django database.
- Handles loading the data and passing it to the django database
-
- Returns:
- int: Count of how many proteins were added
- """
- df = DataLoader.load_proteins()
- for _, row in df.iterrows():
- self.proteins[row['entrez_id']] = models.Protein(
- uniprot_code=row['protein_ac'],
- gene=row['gene_name'],
- entrez=row['entrez_id'],
- protein_name=row['protein_name'])
- self.uniprot_to_ensembl[row['protein_ac']] = row['entrez_id']
- self.gene_name_to_ensembl[row['gene_name']].add(row['entrez_id'])
-
- models.Protein.objects.bulk_create(self.proteins.values())
- return len(self.proteins)
-
- def populate_disorders(self) -> int:
- """ Populates the Disorder table in the django database.
- Handles loading the data and passing it to the django database
-
- Returns:
- int: Count of how many disorders were added
- """
- df = DataLoader.load_disorders()
- for _, row in df.iterrows():
- self.disorders[row['mondo_id']] = models.Disorder(
- mondo_id=row['mondo_id'],
- label=row['label'],
- icd10=row['icd10']
- )
- models.Disorder.objects.bulk_create(self.disorders.values())
- return len(self.disorders)
-
- def populate_drugs(self):
- df = DataLoader.load_drugs()
- for _, row in df.iterrows():
- drug_id = row['drug_id']
- drug_name = row['drug_name']
- drug_status = row['drug_status']
- self.drugs[drug_id] = models.Drug(
- drug_id=drug_id,
- name=drug_name,
- status=drug_status)
- models.Drug.objects.bulk_create(self.drugs.values())
- return len(self.drugs)
+ # def populate_proteins(self) -> int:
+ # """ Populates the Protein table in the django database.
+ # Handles loading the data and passing it to the django database
+ #
+ # Returns:
+ # int: Count of how many proteins were added
+ # """
+ # df = DataLoader.load_proteins()
+ # for _, row in df.iterrows():
+ # self.proteins[row['entrez_id']] = models.Protein(
+ # uniprot_code=row['protein_ac'],
+ # gene=row['gene_name'],
+ # entrez=row['entrez_id'],
+ # protein_name=row['protein_name'])
+ # self.uniprot_to_ensembl[row['protein_ac']] = row['entrez_id']
+ # self.gene_name_to_ensembl[row['gene_name']].add(row['entrez_id'])
+ #
+ # models.Protein.objects.bulk_create(self.proteins.values())
+ # return len(self.proteins)
+ #
+ # def populate_disorders(self) -> int:
+ # """ Populates the Disorder table in the django database.
+ # Handles loading the data and passing it to the django database
+ #
+ # Returns:
+ # int: Count of how many disorders were added
+ # """
+ # df = DataLoader.load_disorders()
+ # for _, row in df.iterrows():
+ # self.disorders[row['mondo_id']] = models.Disorder(
+ # mondo_id=row['mondo_id'],
+ # label=row['label'],
+ # icd10=row['icd10']
+ # )
+ # models.Disorder.objects.bulk_create(self.disorders.values())
+ # return len(self.disorders)
+ #
+ # def populate_drugs(self):
+ # df = DataLoader.load_drugs()
+ # for _, row in df.iterrows():
+ # drug_id = row['drug_id']
+ # drug_name = row['drug_name']
+ # drug_status = row['drug_status']
+ # self.drugs[drug_id] = models.Drug(
+ # drug_id=drug_id,
+ # name=drug_name,
+ # status=drug_status)
+ # models.Drug.objects.bulk_create(self.drugs.values())
+ # return len(self.drugs)
def populate_expessions(self):
self.init_proteins()
--
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