From 9df2bf6df97e62ef70e210127d7535b3b63f5511 Mon Sep 17 00:00:00 2001
From: AndiMajore <andi.majore@googlemail.com>
Date: Tue, 26 Jul 2022 18:37:22 +0200
Subject: [PATCH] small change
---
drugstone/views.py | 19 ++++++++++---------
1 file changed, 10 insertions(+), 9 deletions(-)
diff --git a/drugstone/views.py b/drugstone/views.py
index 9a88139..8cb488a 100755
--- a/drugstone/views.py
+++ b/drugstone/views.py
@@ -1,5 +1,4 @@
import csv
-import json
import random
import string
import time
@@ -7,7 +6,6 @@ import uuid
from collections import defaultdict
import pandas as pd
-from typing import Tuple
import networkx as nx
from django.http import HttpResponse
@@ -232,7 +230,7 @@ def create_network(request) -> Response:
@api_view(['GET'])
-def get_datasets(request)->Response:
+def get_datasets(request) -> Response:
datasets = {}
datasets['protein-protein'] = PPIDatasetSerializer(many=True).to_representation(PPIDataset.objects.all())
datasets['protein-drug'] = PDIDatasetSerializer(many=True).to_representation(PDIDataset.objects.all())
@@ -240,6 +238,7 @@ def get_datasets(request)->Response:
datasets['drug-disorder'] = DrDisDatasetSerializer(many=True).to_representation(DrDiDataset.objects.all())
return Response(datasets)
+
@api_view(['GET'])
def load_network(request) -> Response:
network = NetworkSerializer().to_representation(Network.objects.get(id=request.query_params.get('id')))
@@ -366,7 +365,8 @@ def result_view(request) -> Response:
detail['symbol'] = list(set(detail['symbol']))
detail['entrez'] = list(set(detail['entrez']))
detail['uniprot_ac'] = list(set(detail['uniprot_ac']))
- detail['ensg'] = list(set(detail['ensg']))
+ if 'ensg' in detail:
+ detail['ensg'] = list(set(detail['ensg']))
edges = parameters['input_network']['edges']
edge_endpoint_ids = set()
@@ -400,11 +400,11 @@ def result_view(request) -> Response:
map(lambda n: {"from": f'p{n.from_protein_id}', "to": f'p{n.to_protein_id}'}, interaction_objects))
edges.extend(auto_edges)
result['network']['edges'].extend(edges)
- # uniq_edges = dict()
- # for edge in result['network']['edges']:
- # hash = edge['from'] + edge['to']
- # uniq_edges[hash] = edge
- # result['network']['edges']=list(uniq_edges.values())
+ uniq_edges = dict()
+ for edge in result['network']['edges']:
+ hash = edge['from'] + edge['to']
+ uniq_edges[hash] = edge
+ result['network']['edges'] = list(uniq_edges.values())
# result['network']['nodes'] = list(identifier_nodes)
if 'scores' in result['node_attributes']:
del result['node_attributes']['scores']
@@ -629,6 +629,7 @@ class TissueView(APIView):
tissues = Tissue.objects.all()
return Response(TissueSerializer(many=True).to_representation(tissues))
+
class TissueExpressionView(APIView):
"""
Expression of host proteins in tissues.
--
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