import python_nedrex as nedrex from python_nedrex.core import get_nodes, get_edges, get_api_key from python_nedrex.static import get_metadata def iter_node_collection(coll_name, eval): offset = 0 limit = 10000 while True: result = get_nodes(coll_name, offset=offset, limit=limit) if not result: return for node in result: eval(node) offset += limit def iter_edge_collection(coll_name, eval): offset = 0 limit = 10000 while True: result = get_edges(coll_name, offset=offset, limit=limit) if not result: return for edge in result: eval(edge) offset += limit def iter_ppi(eval): from python_nedrex import ppi offset = 0 limit = 1000 while True: result = ppi.ppis({"exp"},skip = offset, limit=limit) if not result: return for edge in result: eval(edge) offset += limit base_url = "http://82.148.225.92:8123/" nedrex.config.set_url_base(base_url) api_key = get_api_key(accept_eula=True) nedrex.config.set_api_key(api_key) print(f'Nodes: {nedrex.core.get_node_types()}') print(f'Edges: {nedrex.core.get_edge_types()}') print(f'{get_metadata()}') iter_ppi(lambda node: print(node)) # iter_edge_collection("gene_expressed_in_tissue", lambda node: {print(node)})