Select Git revision
Code owners
Assign users and groups as approvers for specific file changes. Learn more.
explorer-page.component.html 13.12 KiB
<app-launch-analysis [(show)]="showAnalysisDialog"></app-launch-analysis>
<div class="covex explorer">
<div class="covex left-window">
<div>
<div class="covex bar-left">
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-database" aria-hidden="true"></i>
</span> Choose Dataset
</p>
<a (click)="collabsData = !collabsData" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header>
<div *ngIf="collabsData">
<div class="card-content">
<app-select-dataset [datasetItems]="datasetItems" [selectedDataset]="selectedDataset"
(selectedDatasetChange)="selectedDataset = $event; createNetwork($event.data)">
</app-select-dataset>
</div>
</div>
</div>
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-info" aria-hidden="true"></i>
</span> Network Overview
</p>
<a (click)="collabsOverview= !collabsOverview" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header>
<div *ngIf="collabsOverview">
<div class="card-content">
<nav class="level" *ngIf="proteinData">
<div class="level-item has-text-centered">
<div>
<p class="heading">Viral<br>Proteins</p>
<p class="title"> {{ proteinData.effects.length }}</p>
</div>
</div>
<div class="level-item has-text-centered">
<div>
<p class="heading">Host<br>Proteins</p>
<p class="title">{{ proteinData.proteins.length }}</p>
</div>
</div>
<div class="level-item has-text-centered">
<div>
<p class="heading">Virus-Host<br>Interactions</p>
<p class="title">{{ proteinData.edges.length }}</p>
</div>
</div>
</nav>
</div>
</div>
</div>
<div class="card bar-large" >
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-search" aria-hidden="true"></i>
</span> Query Protein
</p>
<a (click)="collabsQuery = !collabsQuery" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header >
<div *ngIf="collabsQuery">
<div class="card-content">
<div class="field">
<div class="control">
<app-query-component [queryItems]="queryItems"
(selectItem)="queryAction($event)"></app-query-component>
</div>
</div>
</div>
</div>
</div>
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-filter" aria-hidden="true"></i>
</span> Filter Viral Proteins
</p>
<a (click)="collabsDFilter = !collabsDFilter" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header>
<div *ngIf="collabsDFilter">
<div class="card-content overflow">
<div *ngFor="let bait of viralProteinCheckboxes">
<label class="checkbox">
<input type="checkbox" class="checkbox" [ngModel]="bait.checked"
(ngModelChange)="bait.checked = $event; filterNodes()">
{{ bait.data.effectName }}
</label>
</div>
</div>
<footer class="card-footer">
<a (click)="reset($event);" class="card-footer-item has-text-danger">
<span class="icon">
<i class="fa fa-refresh"></i>
</span>
<span>
Reset
</span>
</a>
</footer>
</div>
</div>
</div>
<div class="covex network">
<div class="card network">
<header class="card-header">
<p class="card-header-title">
Protein-Protein Interaction Network
</p>
</header> <div class="card-content">
<div class="card-image" id="0">
<div class="network center" #network>
<button class="button is-loading center">Loading</button>
</div>
</div>
<footer class="card-footer toolbar">
<button (click)="toCanvas()" class="button is-primary is-rounded">
<span class="icon">
<i class="fas fa-camera" aria-hidden="true"></i>
</span> <span>Screenshot</span>
</button>
<div class="field has-addons footer-toggle-buttons">
<p class="control">
<button class="button is-rounded" [class.is-primary]="physicsEnabled"
(click)="updatePhysicsEnabled(true)">
<span class="icon is-small">
<i class="fas fa-wind"></i>
</span>
<span>Animation On</span>
</button>
</p>
<p class="control">
<button class="button is-rounded" [class.is-primary]="!physicsEnabled"
(click)="updatePhysicsEnabled(false)">
<span>Off</span>
</button>
</p>
</div>
</footer>
</div>
</div>
</div>
</div>
<div class="analysis-view" *ngIf="selectedAnalysisToken">
<app-analysis-window [(token)]="selectedAnalysisToken"></app-analysis-window>
</div>
</div>
<div class="covex bar-right">
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-info" aria-hidden="true"></i>
</span> {{currentProteinAc}}
</p>
<a (click)="collabsDetails = !collabsDetails" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header>
<div *ngIf="collabsDetails">
<div class="card-content">
<div *ngIf="showDetails">
<p><b>Protein Name:</b> {{ currentProteinAc }}</p>
<p><b>Protein AC(s):</b>
<a href="https://www.uniprot.org/uniprot/{{proteinAc}}" target="_blank"
*ngFor="let proteinAc of proteinAcs">
{{ proteinAc }}
</a>
</p>
<div class="field has-addons add-remove-toggle">
<p class="control">
<button class="button is-rounded" [class.is-success]="!inSelection(currentProteinAc)"
[disabled]="inSelection(currentProteinAc)"
(click)="addToSelection(currentProteinAc)"> <span class="icon is-small">
<i class="fas fa-plus"></i>
</span>
<span>Add to Analysis</span>
</button>
</p>
<p class="control">
<button class="button is-rounded" [class.is-danger]="inSelection(currentProteinAc)"
[disabled]="!inSelection(currentProteinAc)"
(click)="removeFromSelection(currentProteinAc)">
<span>Remove</span>
<span class="icon is-small">
<i class="fas fa-trash"></i>
</span>
</button>
</p>
</div>
</div>
<div *ngIf="!showDetails">
Please select a node for further information.
<!-- <a (click)="selectedAnalysisToken = 'oy4UsXfBDobTucdQBhN9IUzfnpqKwzqx'"> Open Analysis Window </a>-->
</div>
</div>
</div>
</div>
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-flask" aria-hidden="true"></i>
</span> Analysis
</p>
<a (click)="collabsAnalysis = !collabsAnalysis" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header>
<div *ngIf="collabsAnalysis">
<div class="card-content">
<button (click)="showAnalysisDialog = true"
class="button is-primary is-fullwidth is-rounded"
[disabled]="analysis.getCount() === 0">
<span class="icon">
<i class="fa fa-rocket"></i>
</span>
<span>
Launch Analysis
</span>
</button>
</div>
</div>
</div>
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-filter" aria-hidden="true"></i>
</span> Tasks
</p>
<a (click)="collabsTask = !collabsTask" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header>
<div *ngIf="collabsTask">
<div class="card-content overflow"> <app-task-list [(token)]="selectedAnalysisToken"></app-task-list>
</div>
<footer class="card-footer">
<a (click)="analysis.removeAllTasks();" class="card-footer-item has-text-danger">
<span class="icon">
<i class="fa fa-trash"></i>
</span>
<span>
Delete All
</span>
</a>
</footer>
</div>
</div>
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-filter" aria-hidden="true"></i>
</span> Selection
</p>
<a (click)="collabsSelection = !collabsSelection" data-action="collapse" class="card-header-icon is-hidden-fullscreen" aria-label="more options">
<span class="icon">
<i class="fas fa-angle-down" aria-hidden="true"></i>
</span>
</a>
</header>
<div *ngIf="collabsSelection">
<div class="card-content overflow">
<table class="table" *ngIf="analysis.getCount() > 0">
<thead>
<tr>
<td>AC</td>
<td>Actions</td>
</tr>
</thead>
<tbody>
<tr *ngFor="let p of analysis.getSelection()">
<td>{{p.proteinAc}}</td>
<td>
<button (click)="analysis.removeProtein(p)" class="button is-small is-danger is-outlined">
<i class="fa fa-trash"></i>
</button>
</td>
</tr>
</tbody>
</table>
<i *ngIf="analysis.getCount() === 0">
To select proteins, click them while pressing CTRL.
</i>
</div>
<footer class="card-footer">
<a (click)="addAllHostProteins()" class="card-footer-item has-text-success">
<span class="icon">
<i class="fa fa-plus"></i>
</span>
<span>
Host Proteins
</span>
</a>
<a class="card-footer-item has-text-grey-light">
<span class="icon">
<i class="fa fa-plus"></i>
</span>
<span>
Viral Proteins
</span>
</a> </footer>
<footer class="card-footer">
<a (click)="analysis.resetSelection()" class="card-footer-item has-text-danger">
<span class="icon">
<i class="fa fa-refresh"></i>
</span>
<span>
Reset
</span>
</a>
</footer>
</div>
</div>
</div>
</div>