diff --git a/src/app/analysis.service.ts b/src/app/analysis.service.ts
index 4b040e5c870fd8e66350cbf5e35661d31152d70c..8cb9f71f808c61116ff424fd85ed039743f16659 100644
--- a/src/app/analysis.service.ts
+++ b/src/app/analysis.service.ts
@@ -37,7 +37,7 @@ export const MAX_TASKS = 3;
export class AnalysisService {
private selectedItems = new Map<string, Wrapper>();
- private selectSubject = new Subject<{ item: Wrapper, selected: boolean }>();
+ private selectListSubject = new Subject<{ items: Wrapper[], selected: boolean | null }>();
public tokens: string[] = [];
public finishedTokens: string[] = [];
@@ -82,40 +82,62 @@ export class AnalysisService {
});
}
- public addItem(wrapper: Wrapper) {
- if (!this.inSelection(wrapper)) {
- this.selectedItems.set(wrapper.nodeId, wrapper);
- this.selectSubject.next({item: wrapper, selected: true});
+ public addItems(wrappers: Wrapper[]) {
+ const addedWrappers: Wrapper[] = [];
+ for (const wrapper of wrappers) {
+ if (!this.inSelection(wrapper)) {
+ addedWrappers.push(wrapper);
+ this.selectedItems.set(wrapper.nodeId, wrapper);
+ }
+ }
+ this.selectListSubject.next({items: addedWrappers, selected: true});
+ }
+
+ public removeItems(wrappers: Wrapper[]) {
+ const removedWrappers: Wrapper[] = [];
+ for (const wrapper of wrappers) {
+ if (this.selectedItems.delete(wrapper.nodeId)) {
+ removedWrappers.push(wrapper);
+ }
}
+ this.selectListSubject.next({items: removedWrappers, selected: false});
}
public addAllHostProteins(nodes, proteins) {
+ const items: Wrapper[] = [];
const visibleIds = new Set<string>(nodes.getIds());
for (const protein of proteins) {
const wrapper = getWrapperFromProtein(protein);
const found = visibleIds.has(wrapper.nodeId);
if (found && !this.inSelection(wrapper)) {
- this.addItem(wrapper);
+ items.push(wrapper);
+ this.selectedItems.set(wrapper.nodeId, wrapper);
}
}
+ this.selectListSubject.next({items, selected: true});
}
public addAllViralProteins(nodes, viralProteins) {
+ const items: Wrapper[] = [];
const visibleIds = new Set<string>(nodes.getIds());
for (const viralProtein of viralProteins) {
const wrapper = getWrapperFromViralProtein(viralProtein);
const found = visibleIds.has(wrapper.nodeId);
if (found && !this.inSelection(wrapper)) {
- this.addItem(wrapper);
+ items.push(wrapper);
+ this.selectedItems.set(wrapper.nodeId, wrapper);
}
}
+ this.selectListSubject.next({items, selected: true});
}
resetSelection() {
- const oldSelection = this.selectedItems.values();
- for (const item of oldSelection) {
- this.removeItem(item);
- }
+ this.selectListSubject.next({items: [], selected: null});
+ this.selectedItems.clear();
+ }
+
+ idInSelection(nodeId: string): boolean {
+ return this.selectedItems.has(nodeId);
}
inSelection(wrapper: Wrapper): boolean {
@@ -130,13 +152,6 @@ export class AnalysisService {
return this.inSelection(getWrapperFromViralProtein(viralProtein));
}
- removeItem(wrapper: Wrapper) {
- const item = this.selectedItems.get(wrapper.nodeId);
- if (this.selectedItems.delete(wrapper.nodeId)) {
- this.selectSubject.next({item, selected: false});
- }
- }
-
getSelection(): Wrapper[] {
return Array.from(this.selectedItems.values());
}
@@ -145,9 +160,9 @@ export class AnalysisService {
return this.selectedItems.size;
}
- subscribe(cb: (item: Wrapper, selected: boolean) => void) {
- this.selectSubject.subscribe((event) => {
- cb(event.item, event.selected);
+ subscribeList(cb: (items: Array<Wrapper>, selected: boolean | null) => void) {
+ this.selectListSubject.subscribe((event) => {
+ cb(event.items, event.selected);
});
}
diff --git a/src/app/components/analysis-window/analysis-window.component.ts b/src/app/components/analysis-window/analysis-window.component.ts
index e167fc61194838cc7c78685efa3e898c96677f44..9f4d4088f8ed46d12d82c41dee1abedb57b1305a 100644
--- a/src/app/components/analysis-window/analysis-window.component.ts
+++ b/src/app/components/analysis-window/analysis-window.component.ts
@@ -154,10 +154,10 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
}
const wrapper = node.wrapper;
if (this.analysis.inSelection(wrapper)) {
- this.analysis.removeItem(wrapper);
+ this.analysis.removeItems([wrapper]);
this.analysis.getCount();
} else {
- this.analysis.addItem(wrapper);
+ this.analysis.addItems([wrapper]);
this.analysis.getCount();
}
}
@@ -174,40 +174,78 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
}
});
- this.analysis.subscribe((item, selected) => {
- if (item.type === 'host') {
- // TODO: Refactor!
- const found = this.tableSelectedProteins.findIndex((i) => getProteinNodeId(i) === item.nodeId);
- const tableItem = this.tableProteins.find((i) => getProteinNodeId(i) === item.nodeId);
- if (selected && found === -1 && tableItem) {
- this.tableSelectedProteins.push(tableItem);
- }
- if (!selected && found !== -1 && tableItem) {
- this.tableSelectedProteins.splice(found, 1);
+ this.analysis.subscribeList((items, selected) => {
+ if (selected !== null) {
+ const updatedNodes = [];
+ for (const item of items) {
+ const node = this.nodeData.nodes.get(item.nodeId);
+ if (!node) {
+ continue;
+ }
+ const pos = this.network.getPositions([item.nodeId]);
+ node.x = pos[item.nodeId].x;
+ node.y = pos[item.nodeId].y;
+ Object.assign(node, NetworkSettings.getNodeStyle(node.wrapper.type, node.isSeed, selected));
+ updatedNodes.push(node);
}
- this.tableSelectedProteins = [...this.tableSelectedProteins];
- } else if (item.type === 'virus') {
- // TODO: Refactor!
- const found = this.tableSelectedViralProteins.findIndex((i) => getViralProteinNodeId(i) === item.nodeId);
- const tableItem = this.tableViralProteins.find((i) => getViralProteinNodeId(i) === item.nodeId);
- if (selected && found === -1 && tableItem) {
- this.tableSelectedViralProteins.push(tableItem);
+ this.nodeData.nodes.update(updatedNodes);
+
+ const proteinSelection = this.tableSelectedProteins;
+ const viralProteinSelection = this.tableSelectedViralProteins;
+ for (const item of items) {
+ if (item.type === 'host') {
+ // TODO: Refactor!
+ const found = proteinSelection.findIndex((i) => getProteinNodeId(i) === item.nodeId);
+ const tableItem = this.tableProteins.find((i) => getProteinNodeId(i) === item.nodeId);
+ if (selected && found === -1 && tableItem) {
+ proteinSelection.push(tableItem);
+ }
+ if (!selected && found !== -1 && tableItem) {
+ proteinSelection.splice(found, 1);
+ }
+ } else if (item.type === 'virus') {
+ // TODO: Refactor!
+ const found = viralProteinSelection.findIndex((i) => getViralProteinNodeId(i) === item.nodeId);
+ const tableItem = this.tableViralProteins.find((i) => getViralProteinNodeId(i) === item.nodeId);
+ if (selected && found === -1 && tableItem) {
+ viralProteinSelection.push(tableItem);
+ }
+ if (!selected && found !== -1 && tableItem) {
+ viralProteinSelection.splice(found, 1);
+ }
+ }
}
- if (!selected && found !== -1 && tableItem) {
- this.tableSelectedViralProteins.splice(found, 1);
+ this.tableSelectedProteins = [...proteinSelection];
+ this.tableSelectedViralProteins = [...viralProteinSelection];
+ } else {
+ const updatedNodes = [];
+ this.nodeData.nodes.forEach((node) => {
+ const nodeSelected = this.analysis.idInSelection(node.id);
+ if (selected !== nodeSelected) {
+ Object.assign(node, NetworkSettings.getNodeStyle(node.wrapper.type, true, selected));
+ updatedNodes.push(node);
+ }
+ });
+ this.nodeData.nodes.update(updatedNodes);
+
+ const proteinSelection = [];
+ const viralProteinSelection = [];
+ for (const item of items) {
+ if (item.type === 'host') {
+ const tableItem = this.tableProteins.find((i) => getProteinNodeId(i) === item.nodeId);
+ if (tableItem) {
+ proteinSelection.push(tableItem);
+ }
+ } else if (item.type === 'virus') {
+ const tableItem = this.tableViralProteins.find((i) => getViralProteinNodeId(i) === item.nodeId);
+ if (tableItem) {
+ viralProteinSelection.push(tableItem);
+ }
+ }
}
- this.tableSelectedViralProteins = [...this.tableSelectedViralProteins];
- }
-
- const node = this.nodeData.nodes.get(item.nodeId);
- if (!node) {
- return;
+ this.tableSelectedProteins = [...proteinSelection];
+ this.tableSelectedViralProteins = [...viralProteinSelection];
}
- const pos = this.network.getPositions([item.nodeId]);
- node.x = pos[item.nodeId].x;
- node.y = pos[item.nodeId].y;
- Object.assign(node, NetworkSettings.getNodeStyle(node.wrapper.type, node.isSeed, selected));
- this.nodeData.nodes.update(node);
});
}
}
@@ -390,20 +428,20 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
if (this.showDrugs) {
const result = await this.http.get<any>(
`${environment.backend}drug_interactions/?token=${this.token}`).toPromise().catch(
- (err: HttpErrorResponse) => {
- // simple logging, but you can do a lot more, see below
- toast({
- message: 'An error occured while fetching the drugs.',
- duration: 5000,
- dismissible: true,
- pauseOnHover: true,
- type: 'is-danger',
- position: 'top-center',
- animate: {in: 'fadeIn', out: 'fadeOut'}
+ (err: HttpErrorResponse) => {
+ // simple logging, but you can do a lot more, see below
+ toast({
+ message: 'An error occured while fetching the drugs.',
+ duration: 5000,
+ dismissible: true,
+ pauseOnHover: true,
+ type: 'is-danger',
+ position: 'top-center',
+ animate: {in: 'fadeIn', out: 'fadeOut'}
+ });
+ this.showDrugs = false;
+ return;
});
- this.showDrugs = false;
- return;
- });
const drugs = result.drugs;
const edges = result.edges;
@@ -458,35 +496,43 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
public tableProteinSelection(e) {
const oldSelection = [...this.tableSelectedProteins];
this.tableSelectedProteins = e;
+ const addItems = [];
+ const removeItems = [];
for (const i of this.tableSelectedProteins) {
const wrapper = getWrapperFromProtein(i);
if (oldSelection.indexOf(i) === -1) {
- this.analysis.addItem(wrapper);
+ addItems.push(wrapper);
}
}
for (const i of oldSelection) {
const wrapper = getWrapperFromProtein(i);
if (this.tableSelectedProteins.indexOf(i) === -1) {
- this.analysis.removeItem(wrapper);
+ removeItems.push(wrapper);
}
}
+ this.analysis.addItems(addItems);
+ this.analysis.removeItems(removeItems);
}
public tableViralProteinSelection(e) {
const oldSelection = [...this.tableSelectedViralProteins];
this.tableSelectedViralProteins = e;
+ const addItems = [];
+ const removeItems = [];
for (const i of this.tableSelectedViralProteins) {
const wrapper = getWrapperFromViralProtein(i);
if (oldSelection.indexOf(i) === -1) {
- this.analysis.addItem(wrapper);
+ addItems.push(wrapper);
}
}
for (const i of oldSelection) {
const wrapper = getWrapperFromViralProtein(i);
if (this.tableSelectedViralProteins.indexOf(i) === -1) {
- this.analysis.removeItem(wrapper);
+ removeItems.push(wrapper);
}
}
+ this.analysis.addItems(addItems);
+ this.analysis.removeItems(removeItems);
}
}
diff --git a/src/app/components/info-box/info-box.component.html b/src/app/components/info-box/info-box.component.html
index bc4f40ee68f1e9c4ac2e67a6ac24cc8af5c75e55..57e89bc8b7f8871462288d31e3d6a2489798169f 100644
--- a/src/app/components/info-box/info-box.component.html
+++ b/src/app/components/info-box/info-box.component.html
@@ -44,7 +44,7 @@
<div class="field has-addons add-remove-toggle" *ngIf="wrapper.type !== 'drug'">
<app-toggle [value]="analysis.inSelection(wrapper)"
- (valueChange)="$event ? analysis.addItem(wrapper) : analysis.removeItem(wrapper)" textOn="Selected"
+ (valueChange)="$event ? analysis.addItems([wrapper]) : analysis.removeItems([wrapper])" textOn="Selected"
textOff="Deselected" tooltipOn="Add protein to selection." tooltipOff="Remove protein from selection."
icon="fa-plus"></app-toggle>
</div>
diff --git a/src/app/components/launch-analysis/launch-analysis.component.ts b/src/app/components/launch-analysis/launch-analysis.component.ts
index adee8d4705627fb5866f0cfac643a7b874a0850b..63dc23feddde45d4ac106d7b84a54e1947b04def 100644
--- a/src/app/components/launch-analysis/launch-analysis.component.ts
+++ b/src/app/components/launch-analysis/launch-analysis.component.ts
@@ -57,7 +57,7 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
constructor(public analysis: AnalysisService) {
this.hasBaits = !!analysis.getSelection().find((i) => i.type === 'virus');
- analysis.subscribe(() => {
+ analysis.subscribeList(() => {
this.hasBaits = !!analysis.getSelection().find((i) => i.type === 'virus');
});
}
diff --git a/src/app/pages/explorer-page/explorer-page.component.html b/src/app/pages/explorer-page/explorer-page.component.html
index 71de0c631d613911417f10aeed72e5ce066ad8b5..6d693342633ca0a6edf9ece1ba3eded7e2a72eda 100644
--- a/src/app/pages/explorer-page/explorer-page.component.html
+++ b/src/app/pages/explorer-page/explorer-page.component.html
@@ -26,7 +26,6 @@
</a>
</header>
<div *ngIf="collapseData">
-
<div class="card-content">
<app-select-dataset [datasetItems]="datasetItems" [selectedDataset]="selectedDataset"
(selectedDatasetChange)="selectedDataset = $event; createNetwork($event.data)">
@@ -371,7 +370,6 @@
</div>
</div>
-
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
@@ -408,7 +406,7 @@
<td *ngIf="p.type == 'virus'">{{p.data.effectName}}</td>
<td *ngIf="p.type == 'host'">{{p.data.name}}</td>
<td>
- <button (click)="analysis.removeItem(p)" class="button is-small is-danger is-outlined has-tooltip"
+ <button (click)="analysis.removeItems([p])" class="button is-small is-danger is-outlined has-tooltip"
data-tooltip="Remove from selection.">
<i class="fa fa-trash"></i>
</button>
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index c83e9db454c50019b3fd89d1c75bf012ca395bc4..3611926b8ab28278b9dce15e1e9141f01c952fdb 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -114,16 +114,38 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
this.showDetails = false;
- this.analysis.subscribe((item, selected) => {
- const node = this.nodeData.nodes.get(item.nodeId);
- if (!node) {
+ this.analysis.subscribeList((items, selected) => {
+ if (!this.nodeData.nodes) {
return;
}
- const pos = this.network.getPositions([item.nodeId]);
- node.x = pos[item.nodeId].x;
- node.y = pos[item.nodeId].y;
- Object.assign(node, NetworkSettings.getNodeStyle(node.wrapper.type, true, selected));
- this.nodeData.nodes.update(node);
+ if (selected !== null) {
+ if (items.length === 0) {
+ return;
+ }
+ const updatedNodes = [];
+ for (const item of items) {
+ const node = this.nodeData.nodes.get(item.nodeId);
+ if (!node) {
+ continue;
+ }
+ const pos = this.network.getPositions([item.nodeId]);
+ node.x = pos[item.nodeId].x;
+ node.y = pos[item.nodeId].y;
+ Object.assign(node, NetworkSettings.getNodeStyle(node.wrapper.type, true, selected));
+ updatedNodes.push(node);
+ }
+ this.nodeData.nodes.update(updatedNodes);
+ } else {
+ const updatedNodes = [];
+ this.nodeData.nodes.forEach((node) => {
+ const nodeSelected = this.analysis.idInSelection(node.id);
+ if (selected !== nodeSelected) {
+ Object.assign(node, NetworkSettings.getNodeStyle(node.wrapper.type, true, selected));
+ updatedNodes.push(node);
+ }
+ });
+ this.nodeData.nodes.update(updatedNodes);
+ }
});
}
@@ -234,9 +256,9 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
const node = this.nodeData.nodes.get(nodeId);
const wrapper = node.wrapper;
if (this.analysis.inSelection(wrapper)) {
- this.analysis.removeItem(wrapper);
+ this.analysis.removeItems([wrapper]);
} else {
- this.analysis.addItem(wrapper);
+ this.analysis.addItems([wrapper]);
}
}
});