From 3f9174874e7da6638c22a4a508e92411f27068f3 Mon Sep 17 00:00:00 2001
From: Michael Hartung <hartungmichael@outlook.com>
Date: Sat, 10 Jul 2021 01:29:20 +0200
Subject: [PATCH] tissue expression with drug nodes fixed
---
.../pages/explorer-page/explorer-page.component.ts | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index 4d3ce811..964ac8d1 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -623,8 +623,14 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
} else {
this.selectedTissue = tissue
const minExp = 0.3;
-
- this.netex.tissueExpressionGenes(this.selectedTissue, this.nodeData.nodes).subscribe((response) => {
+ // filter out non-proteins, e.g. drugs
+ const proteinNodes = [];
+ this.nodeData.nodes.forEach(element => {
+ if (element.id.startsWith('p') && element.netexId !== undefined) {
+ proteinNodes.push(element);
+ }
+ });
+ this.netex.tissueExpressionGenes(this.selectedTissue, proteinNodes).subscribe((response) => {
this.expressionMap = response;
const updatedNodes = [];
// mapping from netex IDs to network IDs, TODO check if this step is necessary
@@ -651,10 +657,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
node.isSeed,
this.analysis.inSelection(wrapper),
gradient));
- // node.wrapper = wrapper;
node.gradient = gradient;
- // this.proteins.find(prot => getProteinNodeId(prot) === netexId).expressionLevel = lvl.level;
- // (node.wrapper.data as Node).expressionLevel = lvl.level;
updatedNodes.push(node);
}
this.nodeData.nodes.update(updatedNodes);
--
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