From 67c5322778239b06ea5ad31e017361591e2564b9 Mon Sep 17 00:00:00 2001
From: AndiMajore <andi.majore@googlemail.com>
Date: Fri, 10 Sep 2021 15:07:15 +0200
Subject: [PATCH] removal of ensg version string in id
---
drugstone-test.html | 22 -------------------
.../explorer-page/explorer-page.component.ts | 15 +++++++++++++
2 files changed, 15 insertions(+), 22 deletions(-)
delete mode 100644 drugstone-test.html
diff --git a/drugstone-test.html b/drugstone-test.html
deleted file mode 100644
index 0b39f2e8..00000000
--- a/drugstone-test.html
+++ /dev/null
@@ -1,22 +0,0 @@
-<html lang="en">
- <head>
- <link rel="stylesheet" type="text/css" href="src/stylesheets/theme.css">
- <script src="https://cdn.jsdelivr.net/gh/AndiMajore/drugstone-releases@0.8.1-rc1/remote/drugsTone.js"></script>
- <link rel="stylesheet" href="https://cdn.jsdelivr.net/gh/AndiMajore/drugstone-releases@0.8.1-rc1/remote/styles.css">
-<!-- <link rel="stylesheet" type="text/css" href="./drugsTone-build/styles.css">-->
- </head>
- <body>
- <div style="height: 700px; width: 1300px;">
- <network-expander
- id='drugstOne'
- config='{"nodeGroups":{"patient":{"type":"patient","color":"#000000","font":{"color":"#f0f0f0"},"groupName":"Patient","shape":"image","image":"https://static.thenounproject.com/png/22780-200.png","shadow":true},"condition":{"type":"condition","color":"#000000","font":{"color":"#f0f0f0"},"groupName":"Condition","shape":"text","shadow":false},"important":{"type":"gene","color":"#ff881f","font":{"color":"#f0f0f0"},"groupName":"Important Gene","shape":"star","shadow":true},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Gene","shape":"circle","shadow":true}},"edgeGroups":{"genotype":{"color":"white","groupName":"Relevant Gene","shadow":false},"has-condition":{"color":"white","groupName":"Has Condition","dashes":[2,2],"shadow":false},"ggi":{"color":"#ffffff","groupName":"Interaction","dashes":[3,2],"shadow":false}},"identifier":"symbol","title":"Breast cancer example network","nodeShadow":false,"edgeShadow":false,"showLegend":true}'
- network='{"nodes":[{"id":"patient-1","group":"patient","x":592,"y":446},{"id":"patient-2","group":"patient","x":235,"y":87},{"id":"patient-3","group":"patient","x":105,"y":369},{"id":"ATM","label":"ATM","group":"gene","x":289,"y":242},{"id":"BARD1","label":"BARD1","group":"gene","x":44,"y":250},{"id":"BRCA1","label":"BRCA1","group":"gene","x":466,"y":576},{"id":"BRCA2","label":"BRCA2","group":"gene","x":507,"y":285},{"id":"BRIP1","label":"BRIP1","group":"gene","x":54,"y":474},{"id":"CHEK2","label":"CHEK2","group":"gene","x":216,"y":590},{"id":"CDH1","label":"CDH1","group":"gene","x":320,"y":-57},{"id":"NF1","label":"NF1","group":"gene","x":481,"y":111},{"id":"NBN","label":"NBN","group":"gene","x":-57,"y":314},{"id":"PALB2","label":"PALB2","group":"gene","x":450,"y":190},{"id":"PTEN","label":"PTEN","group":"important","x":305,"y":494},{"id":"RAD51C","label":"RAD51C","group":"gene","x":182,"y":-90},{"id":"RAD51D","label":"RAD51D","group":"gene","x":368,"y":73},{"id":"STK11","label":"STK11","group":"gene","x":686,"y":330},{"id":"TP53","label":"TP53","group":"important","x":333,"y":316},{"id":"subtype-1","label":"Subtype 1","group":"condition","x":556,"y":171},{"id":"subtype-2","label":"Subtype 2","group":"condition","x":-87,"y":221}],"edges":[{"from":"BRCA1","to":"BRCA2","group":"ggi"},{"from":"ATM","to":"BARD1","group":"ggi"},{"from":"BRCA1","to":"CHEK2","group":"ggi"},{"from":"RAD51C","to":"RAD51D","group":"ggi"},{"from":"STK11","to":"TP53","group":"ggi"},{"from":"TP53","to":"PALB2","group":"ggi"},{"from":"TP53","to":"RAD51D","group":"ggi"},{"from":"TP53","to":"NF1","group":"ggi"},{"from":"TP53","to":"BRCA1","group":"ggi"},{"from":"TP53","to":"BRCA2","group":"ggi"},{"from":"PTEN","to":"BRCA1","group":"ggi"},{"from":"PTEN","to":"BRCA2","group":"ggi"},{"from":"TP53","to":"PTEN","group":"ggi"},{"from":"ATM","to":"PTEN","group":"ggi"},{"from":"CDH1","to":"RAD51D","group":"ggi"},{"from":"CDH1","to":"PALB2","group":"ggi"},{"from":"NBN","to":"BRIP1","group":"ggi"},{"from":"BRIP1","to":"PTEN","group":"ggi"},{"from":"patient-1","to":"BRCA1","group":"genotype"},{"from":"patient-1","to":"TP53","group":"genotype"},{"from":"patient-1","to":"BRCA2","group":"genotype"},{"from":"patient-1","to":"PTEN","group":"genotype"},{"from":"patient-2","to":"TP53","group":"genotype"},{"from":"patient-2","to":"NF1","group":"genotype"},{"from":"patient-2","to":"BARD1","group":"genotype"},{"from":"patient-3","to":"TP53","group":"genotype"},{"from":"patient-3","to":"PTEN","group":"genotype"},{"from":"patient-3","to":"NBN","group":"genotype"},{"from":"patient-1","to":"subtype-1","group":"has-condition"},{"from":"patient-2","to":"subtype-1","group":"has-condition"},{"from":"patient-3","to":"subtype-2","group":"has-condition"}]}'
- task-id='EkxzkoNW7KjWc7Kq9kLQClfnCy5GI1ht'
- >
- </network-expander>
- <script type="text/javascript">
- document.getElementById("drugstOne").addEventListener("taskEvent",(event)=>{console.log(event.detail)})
- </script>
- </div>
-</body>
-</html>
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index 85b68167..f4ef93bd 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -106,6 +106,17 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
if (typeof network === 'undefined') {
return;
}
+ if (this.myConfig.identifier === 'ensg') {
+ // @ts-ignore
+ network.nodes.forEach(node => {
+ node.id = this.removeEnsemblVersion(node.id);
+ });
+ // @ts-ignore
+ network.edges.forEach(edge => {
+ edge.from = this.removeEnsemblVersion(edge.from);
+ edge.to = this.removeEnsemblVersion(edge.to);
+ });
+ }
this.networkJSON = network;
this.createNetwork();
}
@@ -361,6 +372,10 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
this.showDetails = false;
}
+ removeEnsemblVersion(versionId: string):string{
+ return versionId.startsWith('ENSG') ? versionId.split('.')[0] : versionId;
+ }
+
public async createNetwork() {
this.analysis.resetSelection();
this.selectedWrapper = null;
--
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