diff --git a/Dockerfile.dev b/Dockerfile.dev
index b7be260b872c65073a68c4828ac9fd0e078a9b8f..9a8567034ae8c037e0e21985d179718ee4f24907 100644
--- a/Dockerfile.dev
+++ b/Dockerfile.dev
@@ -23,7 +23,7 @@ RUN cp -r website/* /usr/share/nginx/html/
RUN mkdir /usr/share/nginx/html/lib
RUN cp dist/covid19/bundle-es2015.js /usr/share/nginx/html/lib/
RUN cp dist/covid19/bundle-es5.js /usr/share/nginx/html/lib/
-RUN cp dist/covid19/styles.scss /usr/share/nginx/html/lib/
+RUN cp dist/covid19/styles.css /usr/share/nginx/html/lib/
COPY nginx/default.conf /etc/nginx/conf.d/
COPY nginx/htpasswd /etc/nginx/htpasswd
diff --git a/src/app/analysis.service.ts b/src/app/analysis.service.ts
index 23ce8084a92007881179f8b55fc341b98426f564..3e679780c7ce3ede41ba5ba925e1e90e70b04892 100644
--- a/src/app/analysis.service.ts
+++ b/src/app/analysis.service.ts
@@ -1,4 +1,4 @@
-import {Wrapper, Task, getWrapperFromProtein, Protein, Dataset, Tissue} from './interfaces';
+import {Wrapper, Task, getWrapperFromProtein, Node, Dataset, Tissue} from './interfaces';
import {Subject} from 'rxjs';
import {HttpClient} from '@angular/common/http';
import {environment} from '../environments/environment';
@@ -173,7 +173,7 @@ export class AnalysisService {
this.selectListSubject.next({items: newSelection, selected: null});
}
- public addExpressedHostProteins(nodes, proteins: Protein[], threshold: number): number {
+ public addExpressedHostProteins(nodes, proteins: Node[], threshold: number): number {
const items: Wrapper[] = [];
const visibleIds = new Set<string>(nodes.getIds());
for (const protein of proteins) {
@@ -188,7 +188,7 @@ export class AnalysisService {
return items.length;
}
- public addVisibleHostProteins(nodes, proteins: Protein[]): number {
+ public addVisibleHostProteins(nodes, proteins: Node[]): number {
const items: Wrapper[] = [];
const visibleIds = new Set<string>(nodes.getIds());
for (const protein of proteins) {
@@ -224,7 +224,7 @@ export class AnalysisService {
return this.selectedItems.has(wrapper.nodeId);
}
- proteinInSelection(protein: Protein): boolean {
+ proteinInSelection(protein: Node): boolean {
return this.inSelection(getWrapperFromProtein(protein));
}
diff --git a/src/app/components/analysis-panel/analysis-panel.component.ts b/src/app/components/analysis-panel/analysis-panel.component.ts
index ca204933f123933c33135b994e4ac9593b7a7808..76e741d220fc1d456a0e0db8a8cf3eb79672343f 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.ts
+++ b/src/app/components/analysis-panel/analysis-panel.component.ts
@@ -13,7 +13,7 @@ import {HttpClient, HttpErrorResponse} from '@angular/common/http';
import {environment} from '../../../environments/environment';
import {AnalysisService, algorithmNames} from '../../analysis.service';
import {
- Protein,
+ Node,
Task,
Drug,
Wrapper,
@@ -57,7 +57,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
@Output() tokenChange = new EventEmitter<string | null>();
@Output() showDetailsChange = new EventEmitter<Wrapper>();
- @Output() visibleItems = new EventEmitter<[any[], [Protein[], Tissue]]>();
+ @Output() visibleItems = new EventEmitter<[any[], [Node[], Tissue]]>();
public task: Task | null = null;
@@ -73,8 +73,8 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
public effects: any;
public tableDrugs: Array<Drug & Scored & Baited> = [];
- public tableProteins: Array<Protein & Scored & Seeded & Baited> = [];
- public tableSelectedProteins: Array<Protein & Scored & Seeded & Baited> = [];
+ public tableProteins: Array<Node & Scored & Seeded & Baited> = [];
+ public tableSelectedProteins: Array<Node & Scored & Seeded & Baited> = [];
public tableViralProteins: Array<Scored & Seeded> = [];
public tableSelectedViralProteins: Array<Scored & Seeded> = [];
public tableNormalize = false;
@@ -171,7 +171,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
this.tableSelectedProteins = [];
this.tableProteins.forEach((r) => {
r.rawScore = r.score;
- r.isSeed = isSeed[r.proteinAc];
+ r.isSeed = isSeed[r.id];
r.closestViralProteins = (r.closestViralProteins as any).split(',');
if (this.analysis.proteinInSelection(r)) {
this.tableSelectedProteins.push(r);
@@ -410,17 +410,17 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
};
}
- private mapNode(nodeType: WrapperType, details: Protein | Drug, isSeed?: boolean, score?: number): any {
+ private mapNode(nodeType: WrapperType, details: Node | Drug, isSeed?: boolean, score?: number): any {
let nodeLabel;
let wrapper: Wrapper;
let drugType;
let drugInTrial;
if (nodeType === 'protein') {
- const protein = details as Protein;
+ const protein = details as Node;
wrapper = getWrapperFromProtein(protein);
nodeLabel = protein.name;
if (!protein.name) {
- nodeLabel = protein.proteinAc;
+ nodeLabel = protein.id;
}
} else if (nodeType === 'drug') {
const drug = details as Drug;
@@ -596,14 +596,14 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
node.wrapper = item;
node.gradient = 1.0;
protein.expressionLevel = undefined;
- (node.wrapper.data as Protein).expressionLevel = undefined;
+ (node.wrapper.data as Node).expressionLevel = undefined;
updatedNodes.push(node);
}
this.nodeData.nodes.update(updatedNodes);
} else {
this.selectedTissue = tissue;
const minExp = 0.3;
- this.http.get<Array<{ protein: Protein, level: number }>>(
+ this.http.get<Array<{ protein: Node, level: number }>>(
`${environment.backend}tissue_expression/?tissue=${tissue.id}&token=${this.token}`)
.subscribe((levels) => {
const updatedNodes = [];
@@ -629,7 +629,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
node.wrapper = item;
node.gradient = gradient;
this.proteins.find(prot => getProteinNodeId(prot) === item.nodeId).expressionLevel = lvl.level;
- (node.wrapper.data as Protein).expressionLevel = lvl.level;
+ (node.wrapper.data as Node).expressionLevel = lvl.level;
updatedNodes.push(node);
}
this.nodeData.nodes.update(updatedNodes);
diff --git a/src/app/components/info-tile/info-tile.component.html b/src/app/components/info-tile/info-tile.component.html
index 9d64bd448f771879cbb64f320225984bfe51196f..ff2286df6d46491dfbe60dc828aac37fb5e3ce93 100644
--- a/src/app/components/info-tile/info-tile.component.html
+++ b/src/app/components/info-tile/info-tile.component.html
@@ -1,52 +1,20 @@
<div *ngIf="wrapper">
- <div *ngIf="wrapper.type === 'protein'">
+ <div>
<p>
- <b><span>Gene Name: </span></b>
+ <b><span>Name:</span></b>
{{ wrapper.data.name }}
- <span class="icon is-small"><i class="fas fa-dna"></i></span>
</p>
<p>
- <b><span>Uniprot AC :</span></b>
+ <b><span>Access:</span></b>
<a href="https://www.uniprot.org/uniprot/{{ wrapper.data.proteinAc }}" target="_blank">
- {{ wrapper.data.proteinAc }}
+ {{ wrapper.data.access }}
</a>
</p>
- <p>
- <b><span>Name: </span></b>
- {{ wrapper.data.proteinName }}
- </p>
<p *ngIf="wrapper.data.expressionLevel">
<b><span>Expression level: </span></b>
{{ wrapper.data.expressionLevel|number }}
</p>
</div>
- <div *ngIf="wrapper.type === 'drug'">
- <p>
- <b><span>Name: </span></b>
- {{ wrapper.data.name }}
- <span class="icon is-small"><i class="fas fa-capsules"></i></span>
- </p>
- <p>
- <b>DrugBank ID: </b>
- <a href="https://www.drugbank.ca/drugs/{{ wrapper.data.drugId }}" target="_blank"> {{ wrapper.data.drugId }}</a>
- </p>
- <p *ngIf="wrapper.data.status === 'unapproved' ">
- <b>Status: </b> Unapproved
- <span class="icon is-small"><i class="fas fa-search investigational"></i></span>
- <p *ngIf="wrapper.data.status === 'approved' ">
- <b>Status: </b> Approved
- <span class="icon is-small"><i class="fas fa-check"></i></span>
- </p>
- <p *ngIf="wrapper.data.inTrial">
- <b>In trial(s) </b> <span class="icon is-small"><i class="fas fa-check"></i></span>
- </p>
- <div *ngIf="wrapper.data.inTrial && wrapper.data.trialLinks.length > 0" class="list">
- <div *ngFor="let link of wrapper.data.trialLinks" class="list-item">
- <a [href]="link" target="_blank">{{beautify(link)}}</a>
- </div>
- <small class="list-item"><i>Links provided by WHO</i></small>
- </div>
- </div>
<div class="field has-addons add-remove-toggle" *ngIf="wrapper.type !== 'drug'">
<app-toggle [value]="analysis.inSelection(wrapper)"
diff --git a/src/app/components/query-tile/query-tile.component.ts b/src/app/components/query-tile/query-tile.component.ts
index 63997a24984901c9a0c6757117be5c612be0996d..effd4a12bf2201996568f536b9d76e5286be6cea 100644
--- a/src/app/components/query-tile/query-tile.component.ts
+++ b/src/app/components/query-tile/query-tile.component.ts
@@ -1,5 +1,5 @@
import {Component, Input, Output, EventEmitter} from '@angular/core';
-import {Protein, Wrapper} from '../../interfaces';
+import {Node, Wrapper} from '../../interfaces';
@Component({
selector: 'app-query-tile-component',
@@ -14,9 +14,8 @@ export class QueryTileComponent {
querySearch(term: string, item: Wrapper) {
term = term.toLowerCase();
- const data = item.data as Protein;
- return data.name.toLowerCase().indexOf(term) > -1 || data.proteinName.toLowerCase().indexOf(term) > -1 ||
- item.type.toLowerCase().indexOf(term) > -1;
+ const data = item.data as Node;
+ return data.name.toLowerCase().indexOf(term) > -1 || item.type.toLowerCase().indexOf(term) > -1;
}
select(item) {
diff --git a/src/app/config.ts b/src/app/config.ts
index 34a5a918cbbb1de0c39d47bc9d762a7bb4b4651f..6495a82bd026cbca80f93910df2b77026c0ed395 100644
--- a/src/app/config.ts
+++ b/src/app/config.ts
@@ -1,3 +1,14 @@
+// export interface NodeGroup {
+// fill: string;
+// }
+//
+// export interface EdgeGroup {
+// color: string;
+// }
+
+type NodeGroup = any;
+type EdgeGroup = any;
+
export interface IConfig {
legendUrl: string;
legendClass: string;
@@ -11,6 +22,8 @@ export interface IConfig {
showTasks: boolean;
showSelection: boolean;
showFooter: boolean;
+ nodeGroups: { [key: string]: NodeGroup };
+ edgeGroups: { [key: string]: EdgeGroup };
}
export const defaultConfig: IConfig = {
@@ -26,4 +39,20 @@ export const defaultConfig: IConfig = {
showSelection: true,
showTasks: true,
showFooter: true,
+ nodeGroups: {
+ default: {
+ color: 'white'
+ },
+ protein: {
+ color: 'red'
+ },
+ drug: {
+ color: 'green'
+ }
+ },
+ edgeGroups: {
+ default: {
+ color: 'black'
+ }
+ },
};
diff --git a/src/app/dialogs/add-expressed-proteins/add-expressed-proteins.component.ts b/src/app/dialogs/add-expressed-proteins/add-expressed-proteins.component.ts
index 6b9e198705199d78463c8278e166f904a1126034..13d96d13b30d4e610d6c49fa130365dcc2d00cfc 100644
--- a/src/app/dialogs/add-expressed-proteins/add-expressed-proteins.component.ts
+++ b/src/app/dialogs/add-expressed-proteins/add-expressed-proteins.component.ts
@@ -1,6 +1,6 @@
import {Component, EventEmitter, Input, OnChanges, Output, SimpleChanges} from '@angular/core';
import {AnalysisService} from '../../analysis.service';
-import {getWrapperFromProtein, Protein, Tissue} from '../../interfaces';
+import {getWrapperFromProtein, Node, Tissue} from '../../interfaces';
import {environment} from '../../../environments/environment';
import {HttpClient} from '@angular/common/http';
@@ -18,7 +18,7 @@ export class AddExpressedProteinsComponent implements OnChanges {
@Input()
public visibleNodes: Array<any> = [];
@Input()
- public currentViewProteins: Array<Protein> = [];
+ public currentViewProteins: Array<Node> = [];
@Input()
public selectedTissue: Tissue | null = null;
diff --git a/src/app/dialogs/custom-proteins/custom-proteins.component.ts b/src/app/dialogs/custom-proteins/custom-proteins.component.ts
index a6994260cddbaba0302cadec4b03dfa1fd9cc1fa..1dd7e86911e0bb8bd254eb43f6073452c402e060 100644
--- a/src/app/dialogs/custom-proteins/custom-proteins.component.ts
+++ b/src/app/dialogs/custom-proteins/custom-proteins.component.ts
@@ -1,7 +1,7 @@
import {Component, EventEmitter, Input, OnInit, Output} from '@angular/core';
import {HttpClient} from '@angular/common/http';
import {environment} from '../../../environments/environment';
-import {getWrapperFromProtein, Protein, Wrapper} from '../../interfaces';
+import {getWrapperFromProtein, Node, Wrapper} from '../../interfaces';
import {AnalysisService} from '../../analysis.service';
@Component({
@@ -73,7 +73,7 @@ export class CustomProteinsComponent implements OnInit {
const proteinItems = [];
const items = [];
for (const detail of details) {
- proteinItems.push(detail as Protein);
+ proteinItems.push(detail as Node);
items.push(getWrapperFromProtein(detail));
}
this.itemsFound = items;
diff --git a/src/app/interfaces.ts b/src/app/interfaces.ts
index 230bb223c1acbabf0ec1b368f7574b048d317332..e03acc016cc4c8846b9407d13bb31bd845f703ec 100644
--- a/src/app/interfaces.ts
+++ b/src/app/interfaces.ts
@@ -1,10 +1,12 @@
import {AlgorithmType, QuickAlgorithmType} from './analysis.service';
-export interface Protein {
+export interface Node {
name: string;
- proteinAc: string;
- proteinName: string;
- interactions?: Protein[];
+ id: string;
+ access: string;
+ group?: string;
+
+ interactions?: Node[];
x?: number;
y?: number;
expressionLevel?: number;
@@ -15,9 +17,10 @@ export interface Tissue {
name: string;
}
-export interface ProteinProteinInteraction {
+export interface NodeInteraction {
from: string;
to: string;
+ group?: string;
}
export interface NetworkEdge {
@@ -51,15 +54,15 @@ export interface Task {
};
}
-export function getProteinNodeId(protein: Protein) {
- return `p_${protein.proteinAc}`;
+export function getProteinNodeId(protein: Node) {
+ return `p_${protein.id}`;
}
-export function getProteinBackendId(protein: Protein) {
- return protein.proteinAc;
+export function getProteinBackendId(protein: Node) {
+ return protein.id;
}
-export function getNodeIdsFromI(pvi: ProteinProteinInteraction) {
+export function getNodeIdsFromI(pvi: NodeInteraction) {
return {
from: `p_${pvi.from}`,
to: `p_${pvi.to}`,
@@ -88,7 +91,7 @@ export function getDrugBackendId(drug: Drug) {
return drug.drugId;
}
-export function getWrapperFromProtein(protein: Protein): Wrapper {
+export function getWrapperFromProtein(protein: Node): Wrapper {
return {
backendId: getProteinBackendId(protein),
nodeId: getProteinNodeId(protein),
diff --git a/src/app/main-network.ts b/src/app/main-network.ts
index 2217f357dedd41e734e5ab41af434aa4d2a55298..27e2f2032ec316ee8c041be6a90f699243b4b867 100644
--- a/src/app/main-network.ts
+++ b/src/app/main-network.ts
@@ -1,5 +1,5 @@
import {HttpClient} from '@angular/common/http';
-import {ProteinProteinInteraction, Protein, getProteinNodeId} from './interfaces';
+import {NodeInteraction, Node, getProteinNodeId} from './interfaces';
export function getDatasetFilename(dataset: Array<[string, string]>): string {
return `network-${JSON.stringify(dataset).replace(/[\[\]\",]/g, '')}.json`;
@@ -7,7 +7,7 @@ export function getDatasetFilename(dataset: Array<[string, string]>): string {
export class ProteinNetwork {
- constructor(public proteins: Protein[], public edges: ProteinProteinInteraction[]) {
+ constructor(public proteins: Node[], public edges: NodeInteraction[]) {
}
public async loadPositions(http: HttpClient, dataset: Array<[string, string]>) {
@@ -21,8 +21,8 @@ export class ProteinNetwork {
});
}
- public getProtein(ac: string): Protein | undefined {
- return this.proteins.find((p) => p.proteinAc === ac);
+ public getProtein(ac: string): Node | undefined {
+ return this.proteins.find((p) => p.id === ac);
}
public linkNodes() {
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index 66f901e69948b935e55fae5fb6e4e76465bd78bf..8ac0357a8baac6d41136b34c4716f5dae333206f 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -6,8 +6,8 @@ import {
ViewChild
} from '@angular/core';
import {
- ProteinProteinInteraction,
- Protein,
+ NodeInteraction,
+ Node,
Wrapper,
getWrapperFromProtein,
Tissue, getNodeIdsFromI
@@ -44,6 +44,10 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
const configObj = JSON.parse(config);
for (const key of Object.keys(configObj)) {
+ if (key === 'nodeGroups' || key === 'edgeGroups') {
+ this.myConfig[key] = {...this.myConfig[key], ...configObj[key]};
+ continue;
+ }
this.myConfig[key] = configObj[key];
}
}
@@ -98,7 +102,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
public currentDataset = [];
- public currentViewProteins: Protein[];
+ public currentViewProteins: Node[];
public currentViewSelectedTissue: Tissue | null = null;
public currentViewNodes: any[];
@@ -133,13 +137,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
node.y = pos[item.nodeId].y;
node.x = pos[item.nodeId].x;
node.y = pos[item.nodeId].y;
- Object.assign(node, NetworkSettings.getNodeStyle(
- node.wrapper.type,
- true,
- selected,
- undefined,
- undefined,
- node.gradient));
+ Object.assign(node, this.myConfig.nodeGroups[node.wrapper.data.group]);
updatedNodes.push(node);
}
this.nodeData.nodes.update(updatedNodes);
@@ -147,14 +145,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
const updatedNodes = [];
this.nodeData.nodes.forEach((node) => {
const nodeSelected = this.analysis.idInSelection(node.id);
- Object.assign(node, NetworkSettings.getNodeStyle(
- node.wrapper.type,
- true,
- nodeSelected,
- undefined,
- undefined,
- node.gradient));
- updatedNodes.push(node);
+ Object.assign(node, this.myConfig.nodeGroups[node.wrapper.data.group]);
});
this.nodeData.nodes.update(updatedNodes);
}
@@ -269,7 +260,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
}
}
- fillQueryItems(hostProteins: Protein[]) {
+ fillQueryItems(hostProteins: Node[]) {
this.queryItems = [];
hostProteins.forEach((protein) => {
this.queryItems.push(getWrapperFromProtein(protein));
@@ -297,30 +288,32 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
});
}
- private mapHostProteinToNode(hostProtein: Protein): any {
- const wrapper = getWrapperFromProtein(hostProtein);
- const node = NetworkSettings.getNodeStyle('protein', true, this.analysis.inSelection(wrapper));
- let nodeLabel = hostProtein.name;
- if (hostProtein.name.length === 0) {
- nodeLabel = hostProtein.proteinAc;
+ private mapCustomNode(customNode: Node): any {
+ let group = customNode.group;
+ if (typeof group === 'undefined' || typeof this.myConfig.nodeGroups[group] === 'undefined') {
+ group = 'default';
+ }
+ const node = JSON.parse(JSON.stringify(this.myConfig.nodeGroups[group]));
+ let nodeLabel = customNode.name;
+ if (customNode.name.length === 0) {
+ nodeLabel = customNode.id;
}
node.label = nodeLabel;
- node.id = wrapper.nodeId;
- node.x = hostProtein.x;
- node.y = hostProtein.y;
- node.wrapper = wrapper;
+ node.id = customNode.id;
+ node.x = customNode.x;
+ node.y = customNode.y;
return node;
}
- private mapEdge(edge: ProteinProteinInteraction): any {
- const {from, to} = getNodeIdsFromI(edge);
- return {
- from, to,
- color: {
- color: NetworkSettings.getColor('edgeHostVirus'),
- highlight: NetworkSettings.getColor('edgeHostVirusHighlight')
- },
- };
+ private mapCustomEdge(customEdge: NodeInteraction): any {
+ let group = customEdge.group;
+ if (typeof group === 'undefined' || typeof this.myConfig.edgeGroups[group] === 'undefined') {
+ group = 'default';
+ }
+ const edge = JSON.parse(JSON.stringify(this.myConfig.edgeGroups[group]));
+ edge.from = customEdge.from;
+ edge.to = customEdge.to;
+ return edge;
}
private mapDataToNodes(data: ProteinNetwork): { nodes: any[], edges: any[] } {
@@ -328,11 +321,11 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
const edges = [];
for (const protein of data.proteins) {
- nodes.push(this.mapHostProteinToNode(protein));
+ nodes.push(this.mapCustomNode(protein));
}
for (const edge of data.edges) {
- edges.push(this.mapEdge(edge));
+ edges.push(this.mapCustomEdge(edge));
}
return {
@@ -351,7 +344,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
});
}
- analysisWindowChanged($event: [any[], [Protein[], Tissue]]) {
+ analysisWindowChanged($event: [any[], [Node[], Tissue]]) {
if ($event) {
this.currentViewNodes = $event[0];
this.currentViewProteins = $event[1][0];
@@ -409,7 +402,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
node.wrapper = item;
node.gradient = 1.0;
protein.expressionLevel = undefined;
- (node.wrapper.data as Protein).expressionLevel = undefined;
+ (node.wrapper.data as Node).expressionLevel = undefined;
updatedNodes.push(node);
}
this.nodeData.nodes.update(updatedNodes);
diff --git a/src/index.html b/src/index.html
index 5fc741c8cbffb2c5b2794657dd5615369ae5de72..36090d5937e2ef129f38ed292f04da4670226506 100644
--- a/src/index.html
+++ b/src/index.html
@@ -24,7 +24,7 @@
<button onclick="setNetwork('netexp1')">Add proteins</button>
<div>
- <network-expander id="netexp1" config='{"legendClass": "my-legend-1", "showQuery": false}' onload="init1()" style="height: 100vh"></network-expander>
+ <network-expander id="netexp1" config='{"showQuery": false, "nodeGroups": {"default": {"color": "grey"}}, "edgeGroups":{"default": {"color": "grey"}, "custom": {"color": "red"}}}' onload="init1()" style="height: 100vh"></network-expander>
</div>
<!--
@@ -55,29 +55,32 @@
netexp.setAttribute('network', JSON.stringify({
nodes: [
{
- name: "SIRT5",
- proteinAc: "Q9NXA8",
- proteinName: "NAD-dependent protein deacylase sirtuin-5"
+ name: "Protein 1",
+ id: "1",
+ access: "A",
+ group: "protein"
},
{
- name: "RPL36",
- proteinAc: "Q9Y3U8",
- proteinName: "60S ribosomal protein L36"
+ name: "Unknown type",
+ id: "2",
+ access: "B"
},
{
- name: "G3BP2",
- proteinAc: "Q9UNAA86",
- proteinName: "Ras GTPase-activating protein-binding protein 2"
+ name: "Drug 123",
+ id: "3",
+ access: "C",
+ group: "drug"
}
],
edges: [
{
- from: 'Q9NXA8',
- to: 'Q9Y3U8',
+ from: '1',
+ to: '2',
},
{
- from: 'Q9Y3U8',
- to: 'Q9UN86',
+ from: '2',
+ to: '3',
+ group: 'custom'
}
]
}));