diff --git a/src/app/components/analysis-panel/analysis-panel.component.html b/src/app/components/analysis-panel/analysis-panel.component.html
index 6b63f6f2ac7db3ca157e2ad285b0c17b4c872bcd..f9885e4dd513596e823457c6545a5ae917bdddbf 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.html
+++ b/src/app/components/analysis-panel/analysis-panel.component.html
@@ -488,7 +488,7 @@
[tableProteinScoreTooltip]="tableDrugScoreTooltip"
[tableProteinSelection]="tableProteinSelection"
[tableSelectedProteins]="tableSelectedProteins"
- [identifier]="myConfig.identifier"
+ [identifier]="drugstoneConfig.currentConfig().identifier"
></app-prot-table>
</div>
</div>
diff --git a/src/app/components/analysis-panel/analysis-panel.component.ts b/src/app/components/analysis-panel/analysis-panel.component.ts
index a29f32c027a7a559b72fdbc1ab5a5ffa61c0f790..a504f540badbc64eb652bde14ef39c464bb14b6a 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.ts
+++ b/src/app/components/analysis-panel/analysis-panel.component.ts
@@ -59,15 +59,6 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
@ViewChild('networkWithLegend', {static: false}) networkWithLegendEl: ElementRef;
@Input() token: string | null = null;
- @Input()
- public set config(config: IConfig | undefined) {
- if (typeof config === 'undefined') {
- return;
- }
- for (const key of Object.keys(config)) {
- this.myConfig[key] = config[key];
- }
- }
@Output() tokenChange = new EventEmitter<string | null>();
@Output() showDetailsChange = new EventEmitter<Wrapper>();
@@ -75,7 +66,6 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
@Output() visibleItems = new EventEmitter<[any[], [Node[], Tissue], NodeInteraction[]]>();
public task: Task | null = null;
public result: any = null;
- public myConfig: IConfig = JSON.parse(JSON.stringify(defaultConfig));
public fullscreen = false;
@@ -173,6 +163,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
if (this.task && this.task.info.done) {
this.loading = true;
this.netex.getTaskResult(this.token).then(result => {
+ this.drugstoneConfig.set_analysisConfig(result.parameters.config);
this.result = result;
if (this.result.parameters.target === 'drug') {
this.legendService.add_to_context('drug');
@@ -197,9 +188,9 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
this.nodeData.edges = new vis.DataSet(edges);
const container = this.networkHandler.activeNetwork.networkEl.nativeElement;
const isBig = nodes.length > 100 || edges.length > 100;
- const options = NetworkSettings.getOptions(isBig ? 'analysis-big' : 'analysis', this.myConfig);
+ const options = NetworkSettings.getOptions(isBig ? 'analysis-big' : 'analysis', this.drugstoneConfig.currentConfig());
// @ts-ignore
- options.groups = this.drugstoneConfig.config.nodeGroups;
+ options.groups = this.drugstoneConfig.currentConfig().nodeGroups;
// @ts-ignore
for (const g of Object.values(options.groups)) {
// @ts-ignore
@@ -290,7 +281,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
const isSeed = this.networkHandler.activeNetwork.highlightSeeds ? this.networkHandler.activeNetwork.seedMap[node.id] : false;
const nodeStyled = NetworkSettings.getNodeStyle(
node,
- this.myConfig,
+ this.drugstoneConfig.currentConfig(),
isSeed,
selected,
this.networkHandler.activeNetwork.getGradient(item.id),
@@ -323,7 +314,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
}
const nodeStyled = NetworkSettings.getNodeStyle(
node,
- this.myConfig,
+ this.drugstoneConfig.currentConfig(),
isSeed,
selected,
this.networkHandler.activeNetwork.getGradient(node.id),
@@ -366,6 +357,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
close() {
this.networkHandler.activeNetwork.gradientMap = {};
+ this.drugstoneConfig.remove_analysisConfig();
this.expressionExpanded = false;
this.expressionMap = undefined;
this.networkHandler.activeNetwork.seedMap = {};
@@ -423,10 +415,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
* @returns
*/
public async createNetwork(result: any): Promise<{ edges: any[]; nodes: any[]; }> {
- const config = result.parameters.config;
- this.myConfig = config;
-
- const identifier = this.myConfig.identifier;
+ const identifier = this.drugstoneConfig.currentConfig().identifier;
// add drugGroup and foundNodesGroup for added nodes
// these groups can be overwritten by the user
@@ -472,7 +461,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
}
// further analysis and the button function can be used to highlight seeds
// option to use scores[node] as gradient, but sccores are very small
- nodes.push(NetworkSettings.getNodeStyle(nodeDetails as Node, config, false, false, 1, this.networkHandler.activeNetwork.nodeRenderer));
+ nodes.push(NetworkSettings.getNodeStyle(nodeDetails as Node, this.drugstoneConfig.currentConfig(), false, false, 1, this.networkHandler.activeNetwork.nodeRenderer));
} else {
console.log('Missing details for ' + nodeId);
}
@@ -482,7 +471,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
const uniqEdges = [];
for (const edge of network.edges) {
- const e = mapCustomEdge(edge, this.myConfig);
+ const e = mapCustomEdge(edge, this.drugstoneConfig.currentConfig());
e.from = e.from[0] === 'p' && nodeIdMap[e.from] ? nodeIdMap[e.from] : e.from;
e.to = e.to[0] === 'p' && nodeIdMap[e.to] ? nodeIdMap[e.to] : e.to;
const hash = e.from + '_' + e.to;
@@ -492,7 +481,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
}
}
// remove self-edges/loops
- if (!config.selfReferences) {
+ if (!this.drugstoneConfig.currentConfig().selfReferences) {
edges = edges.filter(el => el.from !== el.to);
}
return {
diff --git a/src/app/components/info-tile/info-tile.component.html b/src/app/components/info-tile/info-tile.component.html
index 72b4caa836fdabc15d5810b2f9495b78a7d401cb..9b1cf0a4a7245f1b80c62bc01cceaca10bea57be 100644
--- a/src/app/components/info-tile/info-tile.component.html
+++ b/src/app/components/info-tile/info-tile.component.html
@@ -132,11 +132,11 @@
</a>
</p>
<p
- *ngIf="drugstoneConfig.config.nodeGroups[networkHandler.activeNetwork.selectedWrapper.data[networkHandler.activeNetwork.selectedWrapper.data.group === 'selectedNode' ? '_group':'group']].groupName"
+ *ngIf="drugstoneConfig.currentConfig().nodeGroups[networkHandler.activeNetwork.selectedWrapper.data[networkHandler.activeNetwork.selectedWrapper.data.group === 'selectedNode' ? '_group':'group']].groupName"
[ngClass]="{ 'text-normal': drugstoneConfig.smallStyle }"
>
<b><span>Group:</span></b>
- <span class="is-capitalized"> {{drugstoneConfig.config.nodeGroups[networkHandler.activeNetwork.selectedWrapper.data[networkHandler.activeNetwork.selectedWrapper.data.group === 'selectedNode' ? '_group':'group']].groupName }}</span>
+ <span class="is-capitalized"> {{drugstoneConfig.currentConfig().nodeGroups[networkHandler.activeNetwork.selectedWrapper.data[networkHandler.activeNetwork.selectedWrapper.data.group === 'selectedNode' ? '_group':'group']].groupName }}</span>
</p>
</div>
diff --git a/src/app/components/license-agreement/license-agreement.component.html b/src/app/components/license-agreement/license-agreement.component.html
index 22d8e9cb7e0d3731cd006970cd90ea48f9a0fc65..8eda2227bee0038e588a9306d6e8972dbd4989f2 100644
--- a/src/app/components/license-agreement/license-agreement.component.html
+++ b/src/app/components/license-agreement/license-agreement.component.html
@@ -1,6 +1,6 @@
<div
class="modal absolute"
- [class.is-active]="show && drugstoneConfig.config.licensedDatasets && license"
+ [class.is-active]="show && drugstoneConfig.currentConfig().licensedDatasets && license"
>
<div class="modal-background"></div>
<div class="modal-card">
diff --git a/src/app/components/network/network.component.html b/src/app/components/network/network.component.html
index 9f861cffb9fdc7e2bf9a1736d09fc2016e184e4b..7f46fcb7a7aa128ac6ff86bb27bd6acfb109b13c 100644
--- a/src/app/components/network/network.component.html
+++ b/src/app/components/network/network.component.html
@@ -31,7 +31,7 @@
<div class="card-image canvas-content" #networkWithLegend>
<div *ngIf="drugstoneConfig.config.showLegend">
<app-network-legend
- [config]="drugstoneConfig.config"
+ [config]="drugstoneConfig.currentConfig()"
></app-network-legend>
</div>
<div class="center image1 fullheight" #network>
diff --git a/src/app/components/network/network.component.ts b/src/app/components/network/network.component.ts
index 643a00f5351fc77c9c4233cef98762e3b9d9de75..f9cb859d94bc711b4a27821087dca3b72734f3a4 100644
--- a/src/app/components/network/network.component.ts
+++ b/src/app/components/network/network.component.ts
@@ -100,7 +100,7 @@ export class NetworkComponent implements OnInit {
const names = this.nodeData.nodes.map((node) => node.label);
const nameToNetworkId = {};
this.nodeData.nodes.map((node) => nameToNetworkId[node.label] = node.id);
- edges = await this.omnipath.getInteractions(names, this.drugstoneConfig.config.identifier, nameToNetworkId);
+ edges = await this.omnipath.getInteractions(names, this.drugstoneConfig.currentConfig().identifier, nameToNetworkId);
}
this.nodeData.edges.update(edges);
}
@@ -146,7 +146,7 @@ export class NetworkComponent implements OnInit {
for (const disorder of response.disorders) {
disorder.group = 'defaultDisorder';
disorder.id = disorder.drugstoneId;
- this.adjacentProteinDisorderList.push(mapCustomNode(disorder, this.drugstoneConfig.config))
+ this.adjacentProteinDisorderList.push(mapCustomNode(disorder, this.drugstoneConfig.currentConfig()))
}
this.saveAddNodes(this.adjacentProteinDisorderList);
this.nodeData.edges.add(this.adjacentProteinDisorderEdgesList);
@@ -171,12 +171,12 @@ export class NetworkComponent implements OnInit {
this.netex.adjacentDisorders(this.nodeData.nodes.get(), 'drugs', this.drugstoneConfig.config.indicationDrugDisorder, this.drugstoneConfig.config.licensedDatasets).subscribe(response => {
for (const interaction of response.edges) {
const edge = {from: interaction.drug, to: interaction.disorder};
- this.adjacentDrugDisorderEdgesList.push(mapCustomEdge(edge, this.drugstoneConfig.config));
+ this.adjacentDrugDisorderEdgesList.push(mapCustomEdge(edge, this.drugstoneConfig.currentConfig()));
}
for (const disorder of response.disorders) {
disorder.group = 'defaultDisorder';
disorder.id = disorder.drugstoneId;
- this.adjacentDrugDisorderList.push(mapCustomNode(disorder, this.drugstoneConfig.config));
+ this.adjacentDrugDisorderList.push(mapCustomNode(disorder, this.drugstoneConfig.currentConfig()));
}
this.saveAddNodes(this.adjacentDrugDisorderList);
this.nodeData.edges.add(this.adjacentDrugDisorderEdgesList);
@@ -226,7 +226,7 @@ export class NetworkComponent implements OnInit {
this.netex.adjacentDrugs(this.drugstoneConfig.config.interactionDrugProtein, this.drugstoneConfig.config.licensedDatasets, this.nodeData.nodes.get()).subscribe(response => {
const existingDrugIDs = this.nodeData.nodes.get().filter(n => n.drugstoneId && n.drugstoneType === 'drug').map(n => n.drugstoneId);
for (const interaction of response.pdis) {
- const edge = mapCustomEdge({from: interaction.protein, to: interaction.drug}, this.drugstoneConfig.config)
+ const edge = mapCustomEdge({from: interaction.protein, to: interaction.drug}, this.drugstoneConfig.currentConfig())
if (proteinMap[edge.from]) {
proteinMap[edge.from].forEach(from => {
@@ -247,7 +247,7 @@ export class NetworkComponent implements OnInit {
drug.group = 'foundDrug';
drug.id = getDrugNodeId(drug);
if (existingDrugIDs.indexOf(drug.drugstoneId) === -1) {
- this.adjacentDrugList.push(mapCustomNode(drug, this.drugstoneConfig.config))
+ this.adjacentDrugList.push(mapCustomNode(drug, this.drugstoneConfig.currentConfig()))
}
}
this.nodeData.nodes.add(this.adjacentDrugList);
@@ -357,7 +357,7 @@ export class NetworkComponent implements OnInit {
node,
NetworkSettings.getNodeStyle(
node,
- this.drugstoneConfig.config,
+ this.drugstoneConfig.currentConfig(),
node.isSeed && this.networkHandler.activeNetwork.highlightSeeds,
false,
1.0,
@@ -375,7 +375,7 @@ export class NetworkComponent implements OnInit {
node,
NetworkSettings.getNodeStyle(
node,
- this.drugstoneConfig.config,
+ this.drugstoneConfig.currentConfig(),
node.isSeed && this.networkHandler.activeNetwork.highlightSeeds,
this.analysis.inSelection(getWrapperFromNode(node)),
1.0,
@@ -439,7 +439,7 @@ export class NetworkComponent implements OnInit {
Object.assign(node,
NetworkSettings.getNodeStyle(
node,
- this.drugstoneConfig.config,
+ this.drugstoneConfig.currentConfig(),
node.isSeed && this.networkHandler.activeNetwork.highlightSeeds,
this.analysis.inSelection(wrapper),
gradient,
@@ -496,7 +496,7 @@ export class NetworkComponent implements OnInit {
node,
NetworkSettings.getNodeStyle(
node,
- this.drugstoneConfig.config,
+ this.drugstoneConfig.currentConfig(),
isSeed,
this.analysis.inSelection(getWrapperFromNode(node)),
this.getGradient(node.id),
diff --git a/src/app/dialogs/launch-analysis/launch-analysis.component.ts b/src/app/dialogs/launch-analysis/launch-analysis.component.ts
index 132a99d73ad53e0c63efe011873c4368ff0b86f3..9099770f0372d713397fa81c60b4814e981c807d 100644
--- a/src/app/dialogs/launch-analysis/launch-analysis.component.ts
+++ b/src/app/dialogs/launch-analysis/launch-analysis.component.ts
@@ -113,7 +113,7 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
const seedsFiltered = seeds.filter(el => el != null);
const parameters: any = {
seeds: seedsFiltered,
- config: this.drugstoneConfig.config,
+ config: this.drugstoneConfig.currentConfig(),
input_network: this.networkHandler.activeNetwork.inputNetwork
};
parameters.ppi_dataset = this.drugstoneConfig.config.interactionProteinProtein;
diff --git a/src/app/pages/explorer-page/explorer-page.component.html b/src/app/pages/explorer-page/explorer-page.component.html
index e76a67a66ee48bd285c8ce9ebad3bcc14eae6873..f98bf05451142c6f2c8d51b5a6e908b7a2108bf2 100644
--- a/src/app/pages/explorer-page/explorer-page.component.html
+++ b/src/app/pages/explorer-page/explorer-page.component.html
@@ -52,7 +52,7 @@
*ngIf="networkHandler.activeNetwork.selectedWrapper"
>
<span>
- {{ drugstoneConfig.config.nodeGroups[networkHandler.activeNetwork.selectedWrapper.data[networkHandler.activeNetwork.selectedWrapper.data.group === 'selectedNode' ? '_group':'group']].groupName}}
+ {{ drugstoneConfig.currentConfig().nodeGroups[networkHandler.activeNetwork.selectedWrapper.data[networkHandler.activeNetwork.selectedWrapper.data.group === 'selectedNode' ? '_group':'group']].groupName}}
</span>
</ng-container>
</p>
@@ -467,10 +467,10 @@
<tr>
<td>Label</td>
<td>Group</td>
- <td *ngIf="drugstoneConfig.config.identifier !== 'symbol'">
+ <td *ngIf="drugstoneConfig.currentConfig().identifier !== 'symbol'">
Symbol
</td>
- <td *ngIf="drugstoneConfig.config.identifier !== 'uniprot'">
+ <td *ngIf="drugstoneConfig.currentConfig().identifier !== 'uniprot'">
Uniprot
</td>
<td>Actions</td>
@@ -484,17 +484,17 @@
<td>
<p>
{{
- drugstoneConfig.config.nodeGroups[p.data['_group']][
+ drugstoneConfig.currentConfig().nodeGroups[p.data['_group']][
"groupName"
]
}}
</p>
</td>
- <td *ngIf="drugstoneConfig.config.identifier !== 'symbol'">
+ <td *ngIf="drugstoneConfig.currentConfig().identifier !== 'symbol'">
<p>{{ p.data.symbol }}</p>
</td>
<td
- *ngIf="drugstoneConfig.config.identifier !== 'uniprot'"
+ *ngIf="drugstoneConfig.currentConfig().identifier !== 'uniprot'"
class="uniprot"
title="{{ p.data.uniprotAc }}"
>
@@ -539,7 +539,7 @@
<span class="is-fullwidth">
<app-group-selection
(selectGroupEmitter)="analysis.addGroupToSelection($event)"
- [nodeGroups]="drugstoneConfig.config.nodeGroups"
+ [nodeGroups]="drugstoneConfig.currentConfig().nodeGroups"
></app-group-selection>
</span>
</a>
@@ -586,7 +586,6 @@
networkHandler.activeNetwork.selectedWrapper = $event
"
(visibleItems)="analysisWindowChanged($event)"
- [config]="drugstoneConfig.config"
></app-analysis-panel>
</div>
<!-- explorer network -->
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index b2ca36514a2e6d180894a12bac0581fd78786c0a..ab2348c07ee45787c8d7630cc7a8ccd3068fbfb3 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -154,7 +154,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
node.y = pos[wrapper.id].y;
const nodeStyled = NetworkSettings.getNodeStyle(
node,
- this.drugstoneConfig.config,
+ this.drugstoneConfig.currentConfig(),
false,
selected,
this.networkHandler.activeNetwork.getGradient(wrapper.id),
@@ -192,7 +192,11 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
let configObj = typeof this._config === 'string' ? this._config.length === 0 ? {} : JSON5.parse(this._config) : this._config;
const groupsObj = typeof this._groups === 'string' ? this._groups.length === 0 ? {} : JSON5.parse(this._groups) : this._groups;
configObj = merge(configObj, groupsObj);
- this.drugstoneConfig.config = merge(this.drugstoneConfig.config, configObj);
+ if (this.drugstoneConfig.analysisConfig) {
+ this.drugstoneConfig.set_analysisConfig(merge(this.drugstoneConfig.analysisConfig, configObj));
+ } else {
+ this.drugstoneConfig.config = merge(this.drugstoneConfig.config, configObj);
+ }
// update Drugst.One according to the settings
// check if config updates affect network
@@ -209,7 +213,11 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
}
}
// trigger updates on config e.g. in legend
- this.drugstoneConfig.config = {...this.drugstoneConfig.config};
+ if (this.drugstoneConfig.analysisConfig) {
+ this.drugstoneConfig.analysisConfig = {...this.drugstoneConfig.analysisConfig};
+ } else {
+ this.drugstoneConfig.config = {...this.drugstoneConfig.config};
+ }
if (updateNetworkFlag && typeof this.networkJSON !== 'undefined') {
// update network if network config has changed and networkJSON exists
if (this.networkHandler.activeNetwork.networkInternal !== null) {
@@ -253,7 +261,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
if (this.networkHandler.activeNetwork.networkPositions) {
this.proteinData.updateNodePositions(this.networkHandler.activeNetwork.networkPositions);
}
- let {nodes, edges} = this.proteinData.mapDataToNetworkInput(this.drugstoneConfig.config);
+ let {nodes, edges} = this.proteinData.mapDataToNetworkInput(this.drugstoneConfig.currentConfig());
if (this.drugstoneConfig.config.autofillEdges && nodes.length) {
let node_map = {};
nodes.filter(n => n.drugstoneType === 'protein').forEach(node => {
@@ -274,7 +282,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
}
});
const netexEdges = await this.netex.fetchEdges(nodes, this.drugstoneConfig.config.interactionProteinProtein, this.drugstoneConfig.config.licensedDatasets);
- edges.push(...netexEdges.map(netexEdge => mapNetexEdge(netexEdge, this.drugstoneConfig.config, node_map)).flatMap(e => e));
+ edges.push(...netexEdges.map(netexEdge => mapNetexEdge(netexEdge, this.drugstoneConfig.currentConfig(), node_map)).flatMap(e => e));
}
const edge_map = {};
@@ -303,7 +311,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
this.nodeData.edges = new vis.DataSet(edges);
const container = this.networkHandler.activeNetwork.networkEl.nativeElement;
- const options = NetworkSettings.getOptions('main', this.drugstoneConfig.config);
+ const options = NetworkSettings.getOptions('main', this.drugstoneConfig.currentConfig());
this.networkHandler.activeNetwork.networkInternal = new vis.Network(container, this.nodeData, options);
@@ -374,7 +382,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
private async getNetwork() {
const network = JSON.parse(this.networkJSON);
- if (this.drugstoneConfig.config.identifier === 'ensg') {
+ if (this.drugstoneConfig.currentConfig().identifier === 'ensg') {
// @ts-ignore
network.nodes.forEach(node => {
node.id = this.removeEnsemblVersion(node.id);
@@ -391,7 +399,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
// map data to nodes in backend
if (network.nodes != null && network.nodes.length) {
- network.nodes = await this.netex.mapNodes(network.nodes, this.drugstoneConfig.config.identifier);
+ network.nodes = await this.netex.mapNodes(network.nodes, this.drugstoneConfig.currentConfig().identifier);
}
// if (this.drugstoneConfig.config.identifier === 'ensg') {
@@ -506,7 +514,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
group.shape = 'image';
}
// implement nodeShadow option, it needs to be set for all nodes or none
- group.shadow = this.drugstoneConfig.config.nodeShadow;
+ group.shadow = this.drugstoneConfig.currentConfig().nodeShadow;
// group must not have id, otherwise node id's would be overwritten which causes duplciates
if (group.hasOwnProperty('id')) {
@@ -514,7 +522,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
}
});
- this.drugstoneConfig.config[key] = nodeGroups;
+ this.drugstoneConfig.currentConfig()[key] = nodeGroups;
}
/**
@@ -539,9 +547,9 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
}
// implement edgeShadow option, it needs to be set for all nodes or none
- value.shadow = this.drugstoneConfig.config.edgeShadow;
+ value.shadow = this.drugstoneConfig.currentConfig().edgeShadow;
});
- this.drugstoneConfig.config[key] = edgeGroups;
+ this.drugstoneConfig.currentConfig()[key] = edgeGroups;
}
gProfilerLink(): string {
@@ -581,12 +589,11 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
background_model: 'complete',
type: 'gene',
target: proteins,
- target_id: this.drugstoneConfig.config.identifier
+ target_id: this.drugstoneConfig.currentConfig().identifier
};
-
let resp = await this.netex.digest_request(params).catch(err => console.error(err));
let url = 'https://digest-validation.net/result?id=' + resp.task;
- this.openExternal(url)
+ this.openExternal(url);
}
//TODO change to access through network service
diff --git a/src/app/services/analysis/analysis.service.ts b/src/app/services/analysis/analysis.service.ts
index 1221f40e6149a983d12e288312fb2810b97026cf..6e6bf2f4b738a78ce6fb909eec8284ac62572f68 100644
--- a/src/app/services/analysis/analysis.service.ts
+++ b/src/app/services/analysis/analysis.service.ts
@@ -271,14 +271,14 @@ export class AnalysisService {
const target = ['connect', 'connectSelected'].includes(algorithm) ? 'drug-target' : 'drug';
const parameters: any = {
seeds: seeds,
- config: this.drugstoneConfig.config,
+ config: this.drugstoneConfig.currentConfig(),
input_network: this.networkHandler.activeNetwork.inputNetwork,
- ppi_dataset: this.drugstoneConfig.config.interactionProteinProtein,
- pdi_dataset: this.drugstoneConfig.config.interactionDrugProtein,
+ ppi_dataset: this.drugstoneConfig.currentConfig().interactionProteinProtein,
+ pdi_dataset: this.drugstoneConfig.currentConfig().interactionDrugProtein,
target: target,
num_trees: 5,
tolerance: 10,
- custom_edges: this.drugstoneConfig.config.customEdges.default,
+ custom_edges: this.drugstoneConfig.currentConfig().customEdges.default,
};
diff --git a/src/app/services/drugstone-config/drugstone-config.service.ts b/src/app/services/drugstone-config/drugstone-config.service.ts
index 460ecff38f7d19b0598e8e32a3a857ab1667f142..1fc8ef45235668208b4acf67cae4a11262fe797b 100644
--- a/src/app/services/drugstone-config/drugstone-config.service.ts
+++ b/src/app/services/drugstone-config/drugstone-config.service.ts
@@ -1,4 +1,4 @@
-import { Injectable } from '@angular/core';
+import {Injectable} from '@angular/core';
import {defaultConfig, IConfig} from '../../config';
@Injectable({
@@ -7,7 +7,22 @@ import {defaultConfig, IConfig} from '../../config';
export class DrugstoneConfigService {
public config: IConfig = JSON.parse(JSON.stringify(defaultConfig));
+ public analysisConfig: IConfig = undefined;
public smallStyle = false;
- constructor() { }
+ constructor() {
+ }
+
+ set_analysisConfig(config) {
+ this.analysisConfig = config;
+ }
+
+ remove_analysisConfig() {
+ this.analysisConfig = undefined;
+ }
+
+ currentConfig():IConfig {
+ return this.analysisConfig ? this.analysisConfig : this.config;
+ }
+
}
diff --git a/src/index.html b/src/index.html
index db4da4550db4d324de1861c7c6a13591dbb3b5ca..984a2337150851eb46535615f4c214c43bddd4f9 100644
--- a/src/index.html
+++ b/src/index.html
@@ -97,9 +97,14 @@
<drugst-one id="netexp1"
pluginId="2"
- groups='{"nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
- config='{ "identifier":"symbol","title":"ROBUST output network", "taskDrugName": "Drug Search", "showLegendNodes": true, "showLegendEdges": true, "showSidebar": "left", "showOverview": true, "legendPos": "left", "legendClass": "legend", "showQuery": true, "showItemSelector": true,"showSimpleAnalysis": false,"showAdvAnalysis": true,"showSelection": true,"showTasks": true,"showNetworkMenu": "right","showLegend": true,"showNetworkMenuButtonExpression": true, "showNetworkMenuButtonScreenshot": true,"showNetworkMenuButtonExportGraphml": true,"showNetworkMenuButtonAdjacentDrugs": true,"showNetworkMenuButtonCenter": true,"showConnectGenes": false,"networkMenuButtonAdjacentDrugsLabel": "Drugs","showNetworkMenuButtonAdjacentDisordersProteins": true,"networkMenuButtonAdjacentDisordersProteinsLabel": "Disorders (protein)","showNetworkMenuButtonAdjacentDisordersDrugs": true,"networkMenuButtonAdjacentDisordersDrugsLabel": "Disorders (drug)","showNetworkMenuButtonAnimation": true,"networkMenuButtonAnimationLabel": "Animation", "autofillEdges": false, "physicsOn": false,"useNedrexLicenced": true,"selfReferences": false, "interactionDrugProtein": "NeDRex", "indicationDrugDisorder": "NeDRex","nodeShadow": true,"edgeShadow": true, "algorithms": {"drug": ["trustrank", "closeness", "degree", "proximity"], "drug-target": ["trustrank", "multisteiner", "keypathwayminer", "degree", "closeness", "betweenness"]}, "associatedProteinDisorder": "NeDRex", "expandNetworkMenu": true}'
- network='{"nodes": [{"id": "UBE2I", "group": "gene"}, {"id": "EEF1A1", "group": "gene"}, {"id": "KDM5A", "group": "gene"}, {"id": "THOC2", "group": "gene"}, {"id": "XPO1", "group": "gene"}, {"id": "RPL4", "group": "gene"}, {"id": "TOP1", "group": "gene"}, {"id": "YWHAE", "group": "gene"}, {"id": "CHUK", "group": "gene"}, {"id": "HSP90AB1", "group": "gene"}, {"id": "CD6", "group": "important"}, {"id": "TYK2", "group": "important"}, {"id": "FSTL1", "group": "gene"}, {"id": "CBL", "group": "gene"}, {"id": "NR2F2", "group": "gene"}, {"id": "RUNX1T1", "group": "gene"}, {"id": "MED23", "group": "gene"}, {"id": "IFNAR1", "group": "gene"}, {"id": "LCOR", "group": "gene"}, {"id": "IL10", "group": "important"}, {"id": "NLRP3", "group": "important"}, {"id": "A2M", "group": "gene"}, {"id": "EIF4A1", "group": "gene"}, {"id": "HSPA4", "group": "gene"}, {"id": "ACTB", "group": "gene"}, {"id": "SNRPB", "group": "gene"}, {"id": "KIF1B", "group": "important"}, {"id": "HIST1H1B", "group": "gene"}, {"id": "EFNB3", "group": "gene"}, {"id": "ERP44", "group": "gene"}, {"id": "HSP90AA1", "group": "gene"}, {"id": "KIF2C", "group": "gene"}, {"id": "KCNJ10", "group": "important"}, {"id": "APOE", "group": "important"}, {"id": "RNF14", "group": "gene"}, {"id": "TM9SF1", "group": "gene"}, {"id": "TRIM28", "group": "gene"}, {"id": "RIPK2", "group": "gene"}, {"id": "IL1R1", "group": "gene"}, {"id": "IL1B", "group": "important"}, {"id": "PRDX2", "group": "gene"}, {"id": "GOPC", "group": "gene"}, {"id": "ARHGEF7", "group": "gene"}, {"id": "CASK", "group": "gene"}, {"id": "MYC", "group": "gene"}, {"id": "SNW1", "group": "gene"}, {"id": "KRT31", "group": "gene"}, {"id": "TSSC1", "group": "gene"}, {"id": "LRP2", "group": "gene"}, {"id": "VCAM1", "group": "important"}, {"id": "CRK", "group": "gene"}, {"id": "LGALS3BP", "group": "gene"}, {"id": "PCMT1", "group": "gene"}, {"id": "MLLT4", "group": "gene"}, {"id": "BRCA1", "group": "gene"}, {"id": "IL7R", "group": "important"}, {"id": "BAG1", "group": "gene"}, {"id": "RAB3B", "group": "gene"}, {"id": "MAPK1", "group": "gene"}, {"id": "CPSF7", "group": "gene"}, {"id": "STAT1", "group": "gene"}, {"id": "HLA-DPB1", "group": "important"}, {"id": "NCOR2", "group": "gene"}, {"id": "IL7", "group": "important"}, {"id": "TNFAIP3", "group": "important"}, {"id": "RNF31", "group": "gene"}, {"id": "IRF8", "group": "important"}, {"id": "PTPN11", "group": "gene"}, {"id": "CLEC16A", "group": "important"}, {"id": "BIRC3", "group": "gene"}, {"id": "DEFA1", "group": "gene"}, {"id": "POMC", "group": "important"}, {"id": "UBR4", "group": "gene"}, {"id": "SMARCA5", "group": "gene"}, {"id": "SEC24A", "group": "gene"}, {"id": "ADRB2", "group": "gene"}, {"id": "COPS2", "group": "gene"}, {"id": "TRAF3IP2", "group": "gene"}, {"id": "RBPJ", "group": "important"}, {"id": "RAB39B", "group": "gene"}, {"id": "NCOA6", "group": "gene"}, {"id": "IFNG", "group": "important"}, {"id": "SIAH1", "group": "gene"}, {"id": "CD58", "group": "important"}, {"id": "KRTAP10-8", "group": "gene"}, {"id": "WRAP73", "group": "gene"}, {"id": "FYN", "group": "gene"}, {"id": "GNAI2", "group": "gene"}, {"id": "YWHAH", "group": "gene"}, {"id": "CBLB", "group": "important"}, {"id": "IL2RA", "group": "important"}, {"id": "P2RX7", "group": "important"}, {"id": "CCND3", "group": "gene"}, {"id": "MCAM", "group": "important"}, {"id": "YBX3", "group": "gene"}, {"id": "IL1RN", "group": "important"}, {"id": "IFNB1", "group": "important"}, {"id": "FAF1", "group": "gene"}, {"id": "SPDL1", "group": "gene"}, {"id": "ELAVL1", "group": "gene"}, {"id": "IL12A", "group": "important"}, {"id": "LGALS8", "group": "gene"}, {"id": "GNAI3", "group": "gene"}, {"id": "VDR", "group": "important"}, {"id": "SNTA1", "group": "gene"}, {"id": "TNFRSF1A", "group": "important"}, {"id": "CD40", "group": "important"}, {"id": "RAP1GAP", "group": "gene"}, {"id": "PDGFRB", "group": "gene"}, {"id": "SELE", "group": "important"}, {"id": "VCL", "group": "gene"}, {"id": "IFI16", "group": "gene"}, {"id": 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>
</drugst-one>