diff --git a/src/app/components/analysis-window/analysis-window.component.html b/src/app/components/analysis-window/analysis-window.component.html
index b147c55efe656c72e8f528a8bfc389f3ffcc4726..1338be8d84d06841eb38a9145076517a03bef406 100644
--- a/src/app/components/analysis-window/analysis-window.component.html
+++ b/src/app/components/analysis-window/analysis-window.component.html
@@ -81,7 +81,7 @@
</button>
</p>
</div>
- <div class="field has-addons footer-toggle-buttons">
+ <div class="field has-addons footer-toggle-buttons" *ngIf="false"> <!-- temporarliy disabled -->
<p class="control">
<button class="button is-rounded" [class.is-primary]="showDrugs" (click)="toggleDrugs(true)">
<span class="icon is-small">
@@ -98,8 +98,56 @@
</div>
</footer>
</div>
- <div class="content tab-content" *ngIf="task && task.info.done" [class.is-visible]="tab === 'table'">
- TABLE
+ <div class="content tab-content scrollable" *ngIf="task && task.info.done" [class.is-visible]="tab === 'table'">
+ <h4 class="is-4">Drugs</h4>
+ <table class="table is-striped">
+ <thead>
+ <tr>
+ <td>ID</td>
+ <td>Name</td>
+ <td>Status</td>
+ </tr>
+ </thead>
+ <tbody>
+ <tr *ngFor="let e of tableDrugs">
+ <td>{{e.drugId}}</td>
+ <td>{{e.name}}</td>
+ <td>{{e.status}}</td>
+ </tr>
+ </tbody>
+ </table>
+
+ <h4 class="is-4">Proteins</h4>
+ <table class="table is-striped">
+ <thead>
+ <tr>
+ <td>AC</td>
+ <td>Gene</td>
+ </tr>
+ </thead>
+ <tbody>
+ <tr *ngFor="let e of tableProteins">
+ <td>{{e.proteinAc}}</td>
+ <td>{{e.name}}</td>
+ </tr>
+ </tbody>
+ </table>
+
+ <h4 class="is-4">Viral Proteins</h4>
+ <table class="table is-striped">
+ <thead>
+ <tr>
+ <td>Name</td>
+ <td>Virus Strain</td>
+ </tr>
+ </thead>
+ <tbody>
+ <tr *ngFor="let e of tableViralProteins">
+ <td>{{e.effectName}}</td>
+ <td>{{e.virusName}}</td>
+ </tr>
+ </tbody>
+ </table>
</div>
</div>
</div>
diff --git a/src/app/components/analysis-window/analysis-window.component.scss b/src/app/components/analysis-window/analysis-window.component.scss
index 056832a086a4be55405c315ec225e0365fd83e22..aed06d97eb25dc2aba5c18bd4c7e5d39f376572e 100644
--- a/src/app/components/analysis-window/analysis-window.component.scss
+++ b/src/app/components/analysis-window/analysis-window.component.scss
@@ -10,8 +10,15 @@ div.network {
.tab-content {
visibility: hidden;
+ position: absolute;
+ width: calc(100% - 50px);
+ height: calc(100vh - 210px - 80px);
&.is-visible {
visibility: visible;
}
+
+ &.scrollable {
+ overflow-y: auto;
+ }
}
diff --git a/src/app/components/analysis-window/analysis-window.component.ts b/src/app/components/analysis-window/analysis-window.component.ts
index ac64064d14395dc40060dfde677d6aeb1cf945dc..0b3035d8752438586870d600ab30cec6d01747fe 100644
--- a/src/app/components/analysis-window/analysis-window.component.ts
+++ b/src/app/components/analysis-window/analysis-window.component.ts
@@ -39,6 +39,10 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
public showDrugs = false;
public tab = 'network';
+ public tableDrugs: Array<Drug> = [];
+ public tableProteins: Array<Protein> = [];
+ public tableViralProteins: Array<ViralProtein> = [];
+
constructor(private http: HttpClient, public analysis: AnalysisService) {
}
@@ -67,6 +71,27 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
this.nodeData.nodes = new vis.DataSet(nodes);
this.nodeData.edges = new vis.DataSet(edges);
+ // Fill tables
+ result.networks.forEach((network, i) => {
+ const attributes = result.nodeAttributes[i];
+ const nodeTypes = attributes.nodeTypes || {};
+ const nodeDetails = attributes.details || {};
+ network.nodes.forEach((nodeId, j) => {
+ const nodeType = nodeTypes[nodeId] || this.inferNodeType(nodeId);
+ switch (nodeType) {
+ case 'drug':
+ this.tableDrugs.push(nodeDetails[nodeId] || {});
+ break;
+ case 'host':
+ this.tableProteins.push(nodeDetails[nodeId] || {});
+ break;
+ case 'virus':
+ this.tableViralProteins.push(nodeDetails[nodeId] || {});
+ break;
+ }
+ });
+ });
+
const container = this.networkEl.nativeElement;
const options = {};
@@ -84,7 +109,7 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
let selectedVirusName;
let selectedStatus;
if (selectedNodes[0].nodeType === 'host') {
- const protein: Protein = {name: '', proteinAc: selectedNodes[0].id};
+ const protein: Protein = selectedNodes[0].details;
selectedVirusName = null;
selectedStatus = null;
selectedItem = {name: selectedNodes[0].id, type: 'Host Protein', data: protein};
@@ -101,15 +126,10 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
}
}
} else if (selectedNodes[0].nodeType === 'virus') {
- const virus: ViralProtein = {
- viralProteinId: null,
- effectName: selectedNodes[0].id,
- virusName: null,
- datasetName: null
- };
+ const virus: ViralProtein = selectedNodes[0].details;
selectedId = null;
selectedStatus = null;
- selectedItem = {name: virus.effectName, type: 'Viral Protein', data: virus};
+ selectedItem = {name: virus.effectId, type: 'Viral Protein', data: virus};
selectedVirusName = virus.virusName;
selectedName = virus.effectName;
selectedType = 'Viral Protein';
@@ -122,11 +142,7 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
}
}
} else if (selectedNodes[0].nodeType === 'drug') {
- const drug: Drug = {
- drugId: selectedNodes[0].details.drugId,
- name: selectedNodes[0].details.name,
- status: selectedNodes[0].details.status,
- };
+ const drug: Drug = selectedNodes[0];
selectedId = drug.drugId;
selectedStatus = drug.status;
selectedName = drug.name;
diff --git a/src/app/interfaces.ts b/src/app/interfaces.ts
index fb986b183db5b5c928c23592f3c2f71a5c4be337..e8e47c063540ba37b689e289aa78739c4ae0adc5 100644
--- a/src/app/interfaces.ts
+++ b/src/app/interfaces.ts
@@ -9,7 +9,7 @@ export interface Protein {
}
export interface ViralProtein {
- viralProteinId: string;
+ effectId: string;
effectName: string;
virusName: string;
datasetName: string;
diff --git a/src/app/main-network.ts b/src/app/main-network.ts
index 9308a9e37d8f7409081ecbf760e6bee8c9b9d038..ff003c2e7dfb758f5d0df5dbef9032aa8e22aa51 100644
--- a/src/app/main-network.ts
+++ b/src/app/main-network.ts
@@ -20,7 +20,7 @@ export class ProteinNetwork {
}
});
this.effects.forEach((node) => {
- const nodePosition = nodePositions[`eff_${node.effectName}_${node.virusName}_${node.datasetName}`];
+ const nodePosition = nodePositions[`eff_${node.effectName}_${node.datasetName}_${node.virusName}`];
if (nodePosition) {
node.x = nodePosition.x;
node.y = nodePosition.y;
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index 7edd4fc726dbe97322987188062f5bd85dfa9481..3c9e92d1886064b788106f5108cbc8f312d60b6d 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -38,7 +38,6 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
public collabsData = true;
public collabsOverview = true;
-
public viralProteinCheckboxes: Array<{ checked: boolean; data: ViralProtein }> = [];
public proteinData: ProteinNetwork;
@@ -256,10 +255,12 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
data: this.proteinData.getProtein(nodeId[1])
};
} else if (nodeId[0].startsWith('e')) {
+ const effect = this.effects.find((eff) => eff.effectName === nodeId[1] && eff.datasetName === nodeId[2] &&
+ eff.virusName === nodeId[3]);
node = {
- name: nodeId[1] + '_' + nodeId[2] + '_' + nodeId[3],
+ name: effect.effectId,
type: 'Viral Protein',
- data: this.effects.find((eff) => eff.effectName === nodeId[1] && eff.datasetName === nodeId[2] && eff.virusName === nodeId[3])
+ data: effect
};
}
if (properties.event.srcEvent.ctrlKey) {
@@ -315,7 +316,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
viralProteins.forEach((effect) => {
this.queryItems.push({
- name: effect.effectName,
+ name: effect.effectId,
type: 'Viral Protein',
data: effect
});
@@ -340,7 +341,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
}
});
viralProteins.forEach((effect) => {
- const nodeId = `eff_${effect.effectName}_${effect.datasetName}_${effect.effectName}`;
+ const nodeId = `eff_${effect.effectName}_${effect.datasetName}_${effect.virusName}`;
const found = visibleIds.has(nodeId);
if ((cb.checked || showAll) && !found) {
const node = this.mapViralProteinToNode(effect);
@@ -474,7 +475,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
const found = visibleIds.has(nodeId);
if (found && !this.analysis.inSelection(effect.effectName + '_' + effect.datasetName + '_' + effect.virusName)) {
this.analysis.addItem({
- name: effect.effectName + '_' + effect.datasetName + '_' + effect.virusName,
+ name: effect.effectId,
type: 'Viral Protein',
data: effect
});
diff --git a/src/assets/positions/network-KroganSARS-CoV2.json b/src/assets/positions/network-KroganSARS-CoV2.json
index 0a4a1b90e0f78788aa596e23d97fef0e1200d252..b74f05b86ef6e73ea1867af59d99d1c4e566beb6 100644
--- a/src/assets/positions/network-KroganSARS-CoV2.json
+++ b/src/assets/positions/network-KroganSARS-CoV2.json
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