diff --git a/src/app/components/analysis-panel/analysis-panel.component.html b/src/app/components/analysis-panel/analysis-panel.component.html
index 43a2424c784ff6aaff414b51d026c1f2db6d92bd..55c72b13d14a65cda202821fd05f58e3308cf02e 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.html
+++ b/src/app/components/analysis-panel/analysis-panel.component.html
@@ -13,7 +13,7 @@
</span>
</a>
</header>
- <div class="card-content">
+ <div class="card-content fullheight">
<div class="tabs is-centered">
<ul>
<li [class.is-active]="tab === 'table'"><a (click)="tab = 'table'">Table</a></li>
@@ -21,7 +21,7 @@
<li [class.is-active]="tab === 'meta'"><a (click)="tab = 'meta'">Parameters</a></li>
</ul>
</div>
- <div class="content tab-content meta" *ngIf="task && task.info.done" [class.is-visible]="tab === 'meta'">
+ <div class="tab-content meta" *ngIf="task && task.info.done" [class.is-visible]="tab === 'meta'">
<div *ngIf="task">
<p *ngIf="task.info.algorithm !== 'quick' && task.info.algorithm !== 'super'">
Algorithm: <strong>{{algorithmNames[task.info.algorithm]}}</strong>
@@ -124,16 +124,16 @@
</div>
</div>
</div>
- <div class="content tab-content" *ngIf="task && task.info.done" [class.is-visible]="tab === 'network'">
- <div class="card-image">
- <div class="network center image1" #network>
- <button class="button is-loading center">Loading</button>
+ <div class="tab-content" *ngIf="task && task.info.done" [class.is-visible]="tab === 'network'">
+ <div class="card-image canvas-content" #networkWithLegend>
+ <div *ngIf="myConfig.showLegend">
+ <app-network-legend [config]="myConfig" [analysis]="false"></app-network-legend>
</div>
- <div class="image2">
- <img src="assets/ll2.png" width="200px"/>
+ <div class="fullheight center image1" #network>
+ <button class="button is-loading center">Loading</button>
</div>
</div>
- <footer class="card-footer toolbar">
+ <footer class="card-footer toolbar scroll-y" *ngIf="myConfig.showFooter">
<div class="field">
<p class="control footer-buttons">
<button class="button is-primary is-rounded has-tooltip"
@@ -141,7 +141,7 @@
<span class="icon">
<i class="fas fa-camera" aria-hidden="true"></i>
</span>
- <span>
+ <span [ngClass]="{'text-normal':smallStyle}">
Screenshot
</span>
</button>
@@ -150,48 +150,51 @@
<div class="field">
<p class="control footer-buttons">
- <a [href]="graphmlLink()" class="button is-success is-rounded has-tooltip" data-tooltip="Export this network as .graphml file.">
+ <a [href]="graphmlLink()" class="button is-success is-rounded has-tooltip"
+ data-tooltip="Export this network as .graphml file.">
<span class="icon">
<i class="fas fa-download" aria-hidden="true"></i>
</span>
- <span>
+ <span [ngClass]="{'text-normal':smallStyle}">
Export as .graphml
</span>
</a>
</p>
</div>
-<!-- <div class="field">-->
-<!-- <p class="control footer-buttons">-->
-<!-- <button class="button is-danger is-rounded has-tooltip" data-tooltip="Delete the current analysis."-->
-<!-- (click)="analysis.removeTask(token); close()">-->
-<!-- <span class="icon">-->
-<!-- <i class="fas fa-trash" aria-hidden="true"></i>-->
-<!-- </span>-->
-<!-- <span>-->
-<!-- Delete Analysis-->
-<!-- </span>-->
-<!-- </button>-->
-<!-- </p>-->
-<!-- </div>-->
+ <!-- <div class="field">-->
+ <!-- <p class="control footer-buttons">-->
+ <!-- <button class="button is-danger is-rounded has-tooltip" data-tooltip="Delete the current analysis."-->
+ <!-- (click)="analysis.removeTask(token); close()">-->
+ <!-- <span class="icon">-->
+ <!-- <i class="fas fa-trash" aria-hidden="true"></i>-->
+ <!-- </span>-->
+ <!-- <span>-->
+ <!-- Delete Analysis-->
+ <!-- </span>-->
+ <!-- </button>-->
+ <!-- </p>-->
+ <!-- </div>-->
<div class="footer-buttons dropdown is-up" [class.is-active]="expressionExpanded">
<div class="dropdown-trigger">
<button (click)="expressionExpanded=!expressionExpanded"
class="button is-rounded is-primary" [class.is-outlined]="!selectedTissue"
- aria-haspopup="true" aria-controls="dropdown-menu">
- <span *ngIf="!selectedTissue">Tissue</span>
- <span *ngIf="selectedTissue">{{selectedTissue.name}}</span>
- <span class="icon is-small">
+ aria-haspopup="true" aria-controls="dropdown-menu" [ngClass]="{'button-small':smallStyle}">
+ <div [ngClass]="{'text-small':smallStyle}">
+ <span *ngIf="!selectedTissue">Tissue</span>
+ <span *ngIf="selectedTissue">{{selectedTissue.name}}</span>
+ <span class="icon is-small">
<i class="fas"
[class.fa-angle-up]="expressionExpanded"
[class.fa-angle-left]="!expressionExpanded" aria-hidden="true"></i>
</span>
+ </div>
</button>
</div>
<div class="dropdown-menu" id="dropdown-menu" role="menu">
- <div class="dropdown-content tissue-dropdown">
- <div class="scroll-area">
+ <div class="dropdown-content tissue-dropdown" [ngClass]="{'button-small':smallStyle}">
+ <div class="scroll-area" [ngClass]="{'text-small':smallStyle}">
<a (click)="selectTissue(null)"
[class.is-active]="!selectedTissue"
class="dropdown-item">
@@ -210,10 +213,13 @@
<app-toggle *ngIf="task.info.target === 'drug-target'" class="footer-buttons" textOn="Drugs On" textOff="Off"
tooltipOn="Display drugs in the network" tooltipOff="Hide drugs in the network"
+ [smallStyle]="smallStyle"
[value]="showDrugs" (valueChange)="toggleDrugs($event)"></app-toggle>
<app-toggle class="footer-buttons" textOn="Animation On" textOff="Off"
- tooltipOn="Enable the network animation." tooltipOff="Disable the network animation and freeze nodes."
+ tooltipOn="Enable the network animation."
+ tooltipOff="Disable the network animation and freeze nodes."
+ [smallStyle]="smallStyle"
[value]="physicsEnabled" (valueChange)="updatePhysicsEnabled($event)"></app-toggle>
</footer>
</div>
diff --git a/src/app/components/analysis-panel/analysis-panel.component.scss b/src/app/components/analysis-panel/analysis-panel.component.scss
index 202f31a1670b87f79457d751cc9c432c20009c6c..2d7bc5b5dc9b093b12c324d1ab9e969721767afd 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.scss
+++ b/src/app/components/analysis-panel/analysis-panel.component.scss
@@ -12,7 +12,7 @@ div.network {
visibility: hidden;
position: absolute;
width: calc(100% - 50px);
- height: calc(100vh - 210px - 24px);
+ height: calc(100% - 41px - 67px - 24px);
&.is-visible {
visibility: visible;
@@ -51,3 +51,26 @@ div.network {
font-size: 10px;
width: 10px;
}
+
+.text-small {
+ font-size: 11px;
+}
+
+.text-normal{
+ font-size:12px;
+}
+
+.b-text-small{
+ font-size:14px
+}
+
+.b-text-smaller{
+ font-size:12px
+}
+
+.button-small{
+ padding: 3px 10px 3px 10px;
+}
+.scroll-y{
+ overflow-y: auto;
+}
diff --git a/src/app/components/analysis-panel/analysis-panel.component.ts b/src/app/components/analysis-panel/analysis-panel.component.ts
index 9cc61b9cad32ba7a826c7f1a5356b688f5c2d7a1..b90d64ce57978ec1dabe8f628aa0746d49c4ff4a 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.ts
+++ b/src/app/components/analysis-panel/analysis-panel.component.ts
@@ -29,8 +29,8 @@ import {
import domtoimage from 'dom-to-image';
import {toast} from 'bulma-toast';
import {NetworkSettings} from '../../network-settings';
-import { NetexControllerService } from 'src/app/services/netex-controller/netex-controller.service';
-import { IConfig } from 'src/app/config';
+import {NetexControllerService} from 'src/app/services/netex-controller/netex-controller.service';
+import {defaultConfig, IConfig} from 'src/app/config';
declare var vis: any;
@@ -56,14 +56,25 @@ interface Baited {
export class AnalysisPanelComponent implements OnInit, OnChanges {
@ViewChild('network', {static: false}) networkEl: ElementRef;
-
+ @ViewChild('networkWithLegend', {static: false}) networkWithLegendEl: ElementRef;
@Input() token: string | null = null;
-
+ @Input() public smallStyle = false;
+ @Input()
+ public set config(config: IConfig | undefined) {
+ if (typeof config === 'undefined') {
+ return;
+ }
+ for (const key of Object.keys(config)) {
+ this.myConfig[key] = config[key];
+ }
+ }
@Output() tokenChange = new EventEmitter<string | null>();
@Output() showDetailsChange = new EventEmitter<Wrapper>();
@Output() visibleItems = new EventEmitter<[any[], [Node[], Tissue]]>();
public task: Task | null = null;
+ public myConfig: IConfig = JSON.parse(JSON.stringify(defaultConfig));
+
private network: any;
private nodeData: { nodes: any, edges: any } = {nodes: null, edges: null};
@@ -139,8 +150,6 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
if (this.task && this.task.info.done) {
const result = await this.netex.getTaskResult(this.token);
- console.log("result")
- console.log(result)
const nodeAttributes = result.nodeAttributes || {};
const isSeed: { [key: string]: boolean } = nodeAttributes.isSeed || {};
@@ -177,7 +186,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
this.tableProteins.forEach((r) => {
r.rawScore = r.score;
r.isSeed = isSeed[r.id];
- const wrapper = getWrapperFromNode(r)
+ const wrapper = getWrapperFromNode(r);
if (this.analysis.inSelection(wrapper)) {
this.tableSelectedProteins.push(r);
}
@@ -375,14 +384,12 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
* For the third case, fall back to a default case which can also be set by user.
*/
public inferNodeGroup(wrapper: Wrapper): string {
- console.log(wrapper)
+ console.log(wrapper);
if (wrapper.data.group !== undefined) {
- return wrapper.data.group
- }
- else if (wrapper.data.netexId !== undefined && wrapper.data.netexId.startsWith('d')) {
+ return wrapper.data.group;
+ } else if (wrapper.data.netexId !== undefined && wrapper.data.netexId.startsWith('d')) {
return 'drug';
- }
- else if (wrapper.data.netexId !== undefined && wrapper.data.netexId.startsWith('p')) {
+ } else if (wrapper.data.netexId !== undefined && wrapper.data.netexId.startsWith('p')) {
return 'protein';
}
}
@@ -392,7 +399,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
return wrapper.data.label;
}
const identifier = config.identifier;
- if (identifier === 'uniprot'){
+ if (identifier === 'uniprot') {
return wrapper.data.uniprotAc;
} else if (identifier === 'symbol') {
return wrapper.data.symbol;
@@ -470,14 +477,14 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
*/
private mapNode(config: IConfig, wrapper: Wrapper, isSeed?: boolean, score?: number): any {
- console.log("node group")
- console.log(config.nodeGroups)
- console.log("node")
+ console.log('node group');
+ console.log(config.nodeGroups);
+ console.log('node');
console.log(wrapper.data);
// override group is node is seed
- wrapper.data.group = isSeed ? 'seedNode' : wrapper.data.group
+ wrapper.data.group = isSeed ? 'seedNode' : wrapper.data.group;
const node = JSON.parse(JSON.stringify(config.nodeGroups[wrapper.data.group]));
node.id = wrapper.id;
node.label = this.inferNodeLabel(config, wrapper);
@@ -576,12 +583,22 @@ export class AnalysisPanelComponent implements OnInit, OnChanges {
}
public toImage() {
- domtoimage.toPng(this.networkEl.nativeElement, { bgcolor: '#ffffff' }).then((generatedImage) => {
+ this.downloadDom(this.networkWithLegendEl.nativeElement).catch(error => {
+ console.error("Falling back to network only screenshot. Some components seem to be inaccessable, most likely the legend is a custom image with CORS access problems on the host server side.")
+ this.downloadDom(this.networkEl.nativeElement).catch(e => {
+ console.error("Some network content seems to be inaccessable for saving as a screenshot. This can happen due to custom images used as nodes. Please ensure correct CORS accessability on the images host server.")
+ console.error(e)
+ });
+ });
+ }
+
+ public downloadDom(dom: object) {
+ return domtoimage.toPng(dom, {bgcolor: '#ffffff'}).then((generatedImage) => {
const a = document.createElement('a');
a.href = generatedImage;
a.download = `Network.png`;
a.click();
- }).catch(e => console.error(e));
+ });
}
public tableProteinSelection(e) {
diff --git a/src/app/pages/explorer-page/explorer-page.component.html b/src/app/pages/explorer-page/explorer-page.component.html
index 1fced32e3f690a0965dbe4f35f9566d4dda24e7c..dc9860fd99f6fc4ce645c1d6f50c3907396476a6 100644
--- a/src/app/pages/explorer-page/explorer-page.component.html
+++ b/src/app/pages/explorer-page/explorer-page.component.html
@@ -100,7 +100,7 @@
<div class="analysis-view" *ngIf="selectedAnalysisToken">
<app-analysis-panel [(token)]="selectedAnalysisToken"
(showDetailsChange)="selectedWrapper = $event"
- (visibleItems)="analysisWindowChanged($event)"></app-analysis-panel>
+ (visibleItems)="analysisWindowChanged($event)" [config]="myConfig" [smallStyle]="smallStyle"></app-analysis-panel>
</div>
<div class="card network">
@@ -111,7 +111,7 @@
</p>
</header>
<div class="card-content fullheight">
- <div class="card-image" id="canvas-content" #networkWithLegend>
+ <div class="card-image canvas-content" #networkWithLegend>
<div *ngIf="myConfig.showLegend">
<app-network-legend [config]="myConfig" [analysis]="false"></app-network-legend>
</div>
@@ -122,8 +122,7 @@
</div>
</div>
- <footer *ngIf="myConfig.showFooter" class="card-footer toolbar explorer-footer"
- [ngClass]="{'footer-small':smallStyle}">
+ <footer *ngIf="myConfig.showFooter" class="card-footer toolbar explorer-footer">
<button (click)="toImage()" class="button is-primary is-rounded has-tooltip"
data-tooltip="Take a screenshot of the current network.">
<span class="icon">
diff --git a/src/styles.scss b/src/styles.scss
index ce6f6d24ec9250a73e77effa1536b0cc44771e33..5bf5007ba5771ffb7c21b16ff9c2d1e5ac79d96f 100644
--- a/src/styles.scss
+++ b/src/styles.scss
@@ -21,7 +21,7 @@
height: 100%;
}
-#canvas-content {
+.canvas-content {
height: calc(100% - #{$network-footer-height});
}