diff --git a/angular.json b/angular.json
index 68738f1168e6ac4f42d1e055c7fc36052f4850ba..be601082e2f73742754d9aa6c26ed026d015b7d8 100644
--- a/angular.json
+++ b/angular.json
@@ -76,6 +76,33 @@
}
]
},
+ "development_server": {
+ "fileReplacements": [
+ {
+ "replace": "src/environments/environment.ts",
+ "with": "src/environments/environment.dev_server.ts"
+ }
+ ],
+ "optimization": true,
+ "outputHashing": "all",
+ "sourceMap": false,
+ "namedChunks": false,
+ "extractLicenses": true,
+ "vendorChunk": false,
+ "buildOptimizer": true,
+ "budgets": [
+ {
+ "type": "initial",
+ "maximumWarning": "2mb",
+ "maximumError": "5mb"
+ },
+ {
+ "type": "anyComponentStyle",
+ "maximumWarning": "6kb",
+ "maximumError": "16kb"
+ }
+ ]
+ },
"production": {
"optimization": true,
"outputHashing": "all",
@@ -106,8 +133,8 @@
"dev": {
"browserTarget": "netex:build:development"
},
- "old": {
- "browserTarget": "netex:build:old"
+ "dev_server": {
+ "browserTarget": "netex:build:development_server"
},
"production": {
"browserTarget": "netex:build:production"
diff --git a/package.json b/package.json
index ce84aa5c7774a9362b9c2730c7eb7a0cd6ea6c48..fe8f708d9ca103f37f1ec9f699a531527a45343a 100644
--- a/package.json
+++ b/package.json
@@ -4,6 +4,7 @@
"scripts": {
"ng": "ng",
"start:dev": "ng serve --configuration=dev",
+ "start:dev_server": "ng serve --configuration=dev_server",
"start:prod": "ng serve --configuration=production",
"build": "ng build",
"test": "ng test",
diff --git a/src/app/app.module.ts b/src/app/app.module.ts
index a15619f9e8f1c758a9b196a3af603217677e356c..d562d60f883308c2fa6dca789087a8f1ab9535c6 100644
--- a/src/app/app.module.ts
+++ b/src/app/app.module.ts
@@ -57,6 +57,7 @@ import { BugReportComponent } from './components/bug-report/bug-report.component
import { ViewListComponent } from './components/analysis-panel/view-list/view-list.component';
import { ImageComponent } from './image/image.component';
import { ImageFallbackDirective } from './directives/image-fallback/image-fallback.directive';
+import { ExternalAnalysisButtonComponent } from './components/external-analysis-button/external-analysis-button.component';
@NgModule({
@@ -103,6 +104,7 @@ import { ImageFallbackDirective } from './directives/image-fallback/image-fallba
ViewListComponent,
ImageComponent,
ImageFallbackDirective,
+ ExternalAnalysisButtonComponent,
],
imports: [
BrowserModule,
diff --git a/src/app/components/analysis-panel/view-list/view-list.component.html b/src/app/components/analysis-panel/view-list/view-list.component.html
index b868d021715ff40d2535c455b572474220a23efc..ef960129eca8f0351d49da593272c8080fd8e73b 100644
--- a/src/app/components/analysis-panel/view-list/view-list.component.html
+++ b/src/app/components/analysis-panel/view-list/view-list.component.html
@@ -15,7 +15,7 @@
[tooltipStyleClass]="'drgstn drgstn-tooltip drgstn-tooltip-top'"
tooltipPosition="top">
<div class="column is-8">
- <span class="is-capitalized"
+ <span
><app-fa-solid-icon
icon="crosshairs"
></app-fa-solid-icon>
diff --git a/src/app/components/external-analysis-button/external-analysis-button.component.html b/src/app/components/external-analysis-button/external-analysis-button.component.html
new file mode 100644
index 0000000000000000000000000000000000000000..b93063123561dc15aaf58d4893a536ff66259414
--- /dev/null
+++ b/src/app/components/external-analysis-button/external-analysis-button.component.html
@@ -0,0 +1,47 @@
+<div class="field" *ngIf="!drugstoneConfig.config.showAdvAnalysisContent || !hidden">
+ <div class="control">
+ <a
+ *ngIf="enabled"
+ (click)="callback()"
+ target="_blank"
+ [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
+ class="button is-primary is-fullwidth is-rounded has-tooltip"
+ [pTooltip]="tooltipEnabled"
+ [tooltipStyleClass]="
+ 'drgstn drgstn-tooltip drgstn-tooltip-top'
+ "
+ tooltipPosition="top"
+ >
+ <app-fa-solid-icon
+ classString="first-item-in-button"
+ icon="external-link-alt"
+ ></app-fa-solid-icon>
+ <span
+ [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
+ >
+ {{label}}
+ </span>
+ </a>
+ <a
+ *ngIf="!enabled"
+ disabled
+ [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
+ class="button is-primary is-fullwidth is-rounded has-tooltip"
+ [pTooltip]="tooltipDisabled"
+ [tooltipStyleClass]="
+ 'drgstn drgstn-tooltip drgstn-tooltip-top'
+ "
+ tooltipPosition="top"
+ >
+ <app-fa-solid-icon
+ icon="external-link-alt"
+ classString="first-item-in-button"
+ ></app-fa-solid-icon>
+ <span
+ [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
+ >
+ {{label}}
+ </span>
+ </a>
+ </div>
+</div>
diff --git a/src/app/components/external-analysis-button/external-analysis-button.component.scss b/src/app/components/external-analysis-button/external-analysis-button.component.scss
new file mode 100644
index 0000000000000000000000000000000000000000..62e2cbd7a97c0fd466f1a540680985a98ea67228
--- /dev/null
+++ b/src/app/components/external-analysis-button/external-analysis-button.component.scss
@@ -0,0 +1,3 @@
+.field{
+ margin-bottom: .75rem
+}
diff --git a/src/app/components/external-analysis-button/external-analysis-button.component.spec.ts b/src/app/components/external-analysis-button/external-analysis-button.component.spec.ts
new file mode 100644
index 0000000000000000000000000000000000000000..0b655c90cf5e1a05948d84493a3cc7b8fd899fc8
--- /dev/null
+++ b/src/app/components/external-analysis-button/external-analysis-button.component.spec.ts
@@ -0,0 +1,25 @@
+import { ComponentFixture, TestBed } from '@angular/core/testing';
+
+import { ExternalAnalysisButtonComponent } from './external-analysis-button.component';
+
+describe('ExternalAnalysisButtonComponent', () => {
+ let component: ExternalAnalysisButtonComponent;
+ let fixture: ComponentFixture<ExternalAnalysisButtonComponent>;
+
+ beforeEach(async () => {
+ await TestBed.configureTestingModule({
+ declarations: [ ExternalAnalysisButtonComponent ]
+ })
+ .compileComponents();
+ });
+
+ beforeEach(() => {
+ fixture = TestBed.createComponent(ExternalAnalysisButtonComponent);
+ component = fixture.componentInstance;
+ fixture.detectChanges();
+ });
+
+ it('should create', () => {
+ expect(component).toBeTruthy();
+ });
+});
diff --git a/src/app/components/external-analysis-button/external-analysis-button.component.ts b/src/app/components/external-analysis-button/external-analysis-button.component.ts
new file mode 100644
index 0000000000000000000000000000000000000000..96553001bb3d72267da3897aa0fc848535254f33
--- /dev/null
+++ b/src/app/components/external-analysis-button/external-analysis-button.component.ts
@@ -0,0 +1,26 @@
+import {Component, Input, OnInit} from '@angular/core';
+import {AnalysisService} from '../../services/analysis/analysis.service';
+import {DrugstoneConfigService} from '../../services/drugstone-config/drugstone-config.service';
+
+@Component({
+ selector: 'app-external-analysis-button',
+ templateUrl: './external-analysis-button.component.html',
+ styleUrls: ['./external-analysis-button.component.scss']
+})
+export class ExternalAnalysisButtonComponent implements OnInit {
+
+ @Input() enabled: boolean;
+ @Input() callback: () => void;
+ @Input() hidden: boolean;
+ @Input() label: string;
+ @Input() tooltipEnabled: string;
+ @Input() tooltipDisabled: string;
+
+ constructor(public analysis: AnalysisService,
+ public drugstoneConfig: DrugstoneConfigService) {
+ }
+
+ ngOnInit(): void {
+ }
+
+}
diff --git a/src/app/components/quick-drug-target/quick-drug-target.component.html b/src/app/components/quick-drug-target/quick-drug-target.component.html
index 91771727c407fe4199d2b2cc12651aa4cdc929ed..65429d25c276ba11ab06479d0c7eb2f851a36266 100644
--- a/src/app/components/quick-drug-target/quick-drug-target.component.html
+++ b/src/app/components/quick-drug-target/quick-drug-target.component.html
@@ -49,7 +49,7 @@
'text-normal': drugstoneConfig.smallStyle
}"
>
- Connect All
+ Connect all
</span>
</button>
</div>
@@ -77,7 +77,7 @@
'text-normal': drugstoneConfig.smallStyle
}"
>
- Connect Selected
+ Connect selected
</span>
</button>
</div>
diff --git a/src/app/components/quick-drug/quick-drug.component.html b/src/app/components/quick-drug/quick-drug.component.html
index 98142568dc7e62dfdc29379c7f0f91b3a646a369..a1296c830fa9355126451ef62e8a4d6f4aca20ba 100644
--- a/src/app/components/quick-drug/quick-drug.component.html
+++ b/src/app/components/quick-drug/quick-drug.component.html
@@ -5,7 +5,7 @@
>
<p class="card-header-title">
<app-fa-solid-icon icon="flask"></app-fa-solid-icon>
- Quick Drug Search
+ Quick drug search
</p>
<a
(click)="collapseAnalysisQuick = !collapseAnalysisQuick"
diff --git a/src/app/components/task-list/task-list.component.html b/src/app/components/task-list/task-list.component.html
index ef5e2ab23ebbd13626c6b5e5a9a4bd212f297e0b..3272d7ac2eb72306f403437c1c7de2b416ef05c0 100644
--- a/src/app/components/task-list/task-list.component.html
+++ b/src/app/components/task-list/task-list.component.html
@@ -11,7 +11,7 @@
<div *ngIf="!task.info.startedAt">
<div class="columns mb-0">
<div class="column is-8">
- <span class="is-capitalized"
+ <span
><app-fa-solid-icon
icon="crosshairs"
*ngIf="task.info.target === 'drug-target'"
@@ -65,7 +65,7 @@
<div *ngIf="!task.info.done && !task.info.failed && task.info.startedAt">
<div class="columns mb-0">
<div class="column is-8">
- <span class="is-capitalized"
+ <span
><app-fa-solid-icon
icon="crosshairs"
*ngIf="task.info.target === 'drug-target'"
@@ -111,7 +111,7 @@
[tooltipStyleClass]="'drgstn drgstn-tooltip drgstn-tooltip-top'"
tooltipPosition="top">
<div class="column is-8">
- <span class="is-capitalized"
+ <span
><app-fa-solid-icon
icon="crosshairs"
*ngIf="task.info.target === 'drug-target'"
@@ -150,7 +150,7 @@
<div *ngIf="task.info.failed">
<div class="columns mb-0">
<div class="column is-8">
- <span class="is-capitalized"
+ <span
><app-fa-solid-icon
icon="crosshairs"
*ngIf="task.info.target === 'drug-target'"
diff --git a/src/app/config.ts b/src/app/config.ts
index 73dff93a9241edde216114605868812cd6a395ec..a67a94d385c2bfbacab97250925e73471a252643 100644
--- a/src/app/config.ts
+++ b/src/app/config.ts
@@ -141,8 +141,8 @@ export const defaultConfig: IConfig = {
legendUrl: '',
legendClass: 'legend',
legendPos: 'left',
- taskTargetName: 'Drug Target Search',
- taskDrugName: 'Drug Search',
+ taskTargetName: 'Drug target search',
+ taskDrugName: 'Drug search',
showSidebar: 'left',
showLegendNodes: true,
showLegendEdges: true,
diff --git a/src/app/pages/explorer-page/explorer-page.component.html b/src/app/pages/explorer-page/explorer-page.component.html
index 9919c62289d4550f8c6f89583b66c4a3b820c073..8fdd20e1a29d75bd810c1282a1ee70698832c2a1 100644
--- a/src/app/pages/explorer-page/explorer-page.component.html
+++ b/src/app/pages/explorer-page/explorer-page.component.html
@@ -174,147 +174,11 @@
</button>
</div>
</div>
- <div class="field" *ngIf="!drugstoneConfig.config.showAdvAnalysisContent || drugstoneConfig.config.showAdvAnalysisContent.includes('enrichment-gprofiler')">
- <div class="control">
- <a
- *ngIf="analysis.getCount() > 0"
- (click)="openExternal(gProfilerLink())"
- target="_blank"
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- class="button is-primary is-fullwidth is-rounded has-tooltip"
- pTooltip="Use enrichment analysis via g:Profiler (external)."
- [tooltipStyleClass]="
- 'drgstn drgstn-tooltip drgstn-tooltip-top'
- "
- tooltipPosition="top"
- >
- <app-fa-solid-icon
- classString="first-item-in-button"
- icon="external-link-alt"
- ></app-fa-solid-icon>
- <span
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- >
- g:Profiler Enrichment Analysis
- </span>
- </a>
- <a
- *ngIf="analysis.getCount() === 0"
- disabled
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- class="button is-primary is-fullwidth is-rounded has-tooltip"
- pTooltip="Select proteins by double clicking, to run enrichment analysis via g:Profiler (external)."
- [tooltipStyleClass]="
- 'drgstn drgstn-tooltip drgstn-tooltip-top'
- "
- tooltipPosition="top"
- >
- <app-fa-solid-icon
- icon="external-link-alt"
- classString="first-item-in-button"
- ></app-fa-solid-icon>
- <span
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- >
- g:Profiler Enrichment Analysis
- </span>
- </a>
- </div>
- </div>
- <div class="field" *ngIf="!drugstoneConfig.config.showAdvAnalysisContent || drugstoneConfig.config.showAdvAnalysisContent.includes('enrichment-digest')">
- <div class="control">
- <a
- *ngIf="analysis.getCount() > 0"
- (click)="openDigest()"
- target="_blank"
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- class="button is-primary is-fullwidth is-rounded has-tooltip"
- pTooltip="Use enrichment analysis via DIGEST (external)."
- [tooltipStyleClass]="
- 'drgstn drgstn-tooltip drgstn-tooltip-top'
- "
- tooltipPosition="top"
- >
- <app-fa-solid-icon
- classString="first-item-in-button"
- icon="external-link-alt"
- ></app-fa-solid-icon>
- <span
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- >
- DIGEST Enrichment Analysis
- </span>
- </a>
- <a
- *ngIf="analysis.getCount() === 0"
- disabled
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- class="button is-primary is-fullwidth is-rounded has-tooltip"
- pTooltip="Select proteins by double clicking, to run enrichment analysis via DIGEST (external)."
- [tooltipStyleClass]="
- 'drgstn drgstn-tooltip drgstn-tooltip-top'
- "
- tooltipPosition="top"
- >
- <app-fa-solid-icon
- icon="external-link-alt"
- classString="first-item-in-button"
- ></app-fa-solid-icon>
- <span
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- >
- DIGEST Enrichment Analysis
- </span>
- </a>
- </div>
- </div>
- <div class="field" *ngIf="!drugstoneConfig.config.showAdvAnalysisContent || drugstoneConfig.config.showAdvAnalysisContent.includes('search-ndex')">
- <div class="control">
- <a
- *ngIf="analysis.getCount() > 0"
- (click)="openNDEx()"
- target="_blank"
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- class="button is-primary is-fullwidth is-rounded has-tooltip"
- pTooltip="Use NDEx Integrated Query to find similar, curated pathways (external)."
- [tooltipStyleClass]="
- 'drgstn drgstn-tooltip drgstn-tooltip-top'
- "
- tooltipPosition="top"
- >
- <app-fa-solid-icon
- classString="first-item-in-button"
- icon="external-link-alt"
- ></app-fa-solid-icon>
- <span
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- >
- NDex Integrated Query
- </span>
- </a>
- <a
- *ngIf="analysis.getCount() === 0"
- disabled
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- class="button is-primary is-fullwidth is-rounded has-tooltip"
- pTooltip="Select proteins by double clicking, to find similar, curated pathways via NDEx Integrated Query to (external)."
- [tooltipStyleClass]="
- 'drgstn drgstn-tooltip drgstn-tooltip-top'
- "
- tooltipPosition="top"
- >
- <app-fa-solid-icon
- icon="external-link-alt"
- classString="first-item-in-button"
- ></app-fa-solid-icon>
- <span
- [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }"
- >
- NDEx Integrated Query
- </span>
- </a>
- </div>
- </div>
+ <app-external-analysis-button [enabled]="analysis.getCount() > 0" label="g:Profiler enrichment analysis" tooltipDisabled="Select proteins by double clicking, to run enrichment analysis via g:Profiler (external)." tooltipEnabled="Use enrichment analysis via g:Profiler (external)." [callback]="openGProfiler.bind(this)" [hidden]="!drugstoneConfig.config.showAdvAnalysisContent.includes('enrichment-gprofiler')"></app-external-analysis-button>
+
+ <app-external-analysis-button [enabled]="analysis.getCount() > 0" label="DIGEST enrichment analysis" tooltipDisabled="Select proteins by double clicking, to run enrichment analysis via DIGEST (external)." tooltipEnabled="Use enrichment analysis via DIGEST (external)." [callback]="openDigest.bind(this)" [hidden]="!drugstoneConfig.config.showAdvAnalysisContent.includes('enrichment-digest')"></app-external-analysis-button>
+
+ <app-external-analysis-button [enabled]="analysis.getCount() > 0" label="NDEx Integrated Query" tooltipDisabled="Select proteins by double clicking, to find similar, curated pathways via NDEx Integrated Query to (external)." tooltipEnabled="Use NDEx Integrated Query to find similar, curated pathways (external)." [callback]="openNDEx.bind(this)" [hidden]="!drugstoneConfig.config.showAdvAnalysisContent.includes('search-ndex')"></app-external-analysis-button>
</div>
</div>
</div>
@@ -431,7 +295,7 @@
pTooltip="Add first neighbor proteins of selection."
>
<app-fa-solid-icon icon="plus"></app-fa-solid-icon>
- <span>Add First neighbors</span>
+ <span>Add first neighbors</span>
</a>
</footer>
<footer class="card-footer">
@@ -442,7 +306,7 @@
pTooltip="Add full connected components of all nodes in selection."
>
<app-fa-solid-icon icon="plus"></app-fa-solid-icon>
- <span>Add Connected Components</span>
+ <span>Add connected components</span>
</a>
</footer>
<footer class="card-footer">
diff --git a/src/app/pages/explorer-page/explorer-page.component.scss b/src/app/pages/explorer-page/explorer-page.component.scss
index 817eff9536987064fda0c8f68042584ab3d34144..ae13fae21255fb3992728e2903f22a8b53531556 100644
--- a/src/app/pages/explorer-page/explorer-page.component.scss
+++ b/src/app/pages/explorer-page/explorer-page.component.scss
@@ -136,7 +136,6 @@
p {
margin-bottom: 0 !important;
}
-
}
.task-list-container {
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index 9c3f04c0f60f3752c206ea50794207c9f3e023b0..d4a3723a4e1252d16366ed75ae1356c133e7be93 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -749,6 +749,10 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
'background=';
}
+ openGProfiler(): void {
+ this.openExternal(this.gProfilerLink());
+ }
+
openExternal(url) {
window.open(url, '_blank').focus();
}
diff --git a/src/app/services/analysis/analysis.service.ts b/src/app/services/analysis/analysis.service.ts
index 14fd10ab4ce47b21eb88ff9386add775920956b9..6ddc3ffb32b5d0f0ea8ced5c11b70b1f846e243d 100644
--- a/src/app/services/analysis/analysis.service.ts
+++ b/src/app/services/analysis/analysis.service.ts
@@ -28,9 +28,9 @@ export const algorithmNames = {
proximity: 'Network Proximity',
betweenness: 'Betweenness Centrality',
quick: 'Simple',
- super: 'Quick-Start',
- connect: 'Connect All',
- connectSelected: 'Connect Selected'
+ super: 'Quick-start',
+ connect: 'Connect all',
+ connectSelected: 'Connect selected'
};
export interface Algorithm {
diff --git a/src/environments/environment.dev_server.ts b/src/environments/environment.dev_server.ts
new file mode 100644
index 0000000000000000000000000000000000000000..b0cef91d310dc45abf4b5853f5d8b3928d75a351
--- /dev/null
+++ b/src/environments/environment.dev_server.ts
@@ -0,0 +1,12 @@
+export const environment = {
+ production: false,
+ backend: 'https://drugstone-dev-api.zbh.uni-hamburg.de/'
+};
+/*
+ * For easier debugging in development mode, you can import the following file
+ * to ignore zone related error stack frames such as `zone.run`, `zoneDelegate.invokeTask`.
+ *
+ * This import should be commented out in production mode because it will have a negative impact
+ * on performance if an error is thrown.
+ */
+import 'zone.js/plugins/zone-error';
diff --git a/src/index.html b/src/index.html
index 29e12e9ebccb0a3ac048fbb4acab489dd983e7d6..b7c2ba7cd717252cce14aeeef3f422a26c5a0c17 100644
--- a/src/index.html
+++ b/src/index.html
@@ -115,7 +115,7 @@ menu<br>
<!-- task-id="ks38WxeCSdbXk2cajKACinnUnCHWbf4I" -->
<drugst-one id="netexp1"
groups='{"nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
- config='{"customEdges":{"default":true, "selectable":false},"licensedDatasets": true, "showAdvAnalysisContent":["drug-search", "enrichment-gprofiler", "enrichment-digest", "search-ndex"],"identifier":"symbol","showSimpleAnalysis":true, "title":"ROBUST output network", "taskDrugName": "Drug Search", "showLegendNodes": true, "showLegendEdges": true, "showSidebar": "left", "showOverview": true, "legendPos": "left", "legendClass": "legend", "showQuery": true, "showItemSelector": true,"showSimpleAnalysis": true,"showAdvAnalysis": true,"showSelection": true,"showTasks": true,"showNetworkMenu": "right","showLegend": true,"showNetworkMenuButtonExpression": true, "showNetworkMenuButtonScreenshot": true,"showNetworkMenuButtonExportGraphml": true,"showNetworkMenuButtonAdjacentDrugs": true,"showNetworkMenuButtonCenter": true,"showConnectGenes": true,"networkMenuButtonAdjacentDrugsLabel": "Drugs","showNetworkMenuButtonAdjacentDisordersProteins": true,"networkMenuButtonAdjacentDisordersProteinsLabel": "Disorders (protein)","showNetworkMenuButtonAdjacentDisordersDrugs": true,"networkMenuButtonAdjacentDisordersDrugsLabel": "Disorders (drug)","showNetworkMenuButtonAnimation": true,"networkMenuButtonAnimationLabel": "Animation", "autofillEdges": false, "physicsOn": false,"useNedrexLicenced": true,"selfReferences": false, "interactionDrugProtein": "NeDRex", "indicationDrugDisorder": "NeDRex","nodeShadow": true,"edgeShadow": true, "algorithms": {"drug": ["trustrank", "closeness", "degree", "proximity"], "drug-target": ["trustrank", "multisteiner", "keypathwayminer", "degree", "closeness", "betweenness"]}, "associatedProteinDisorder": "NeDRex", "nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
+ config='{"customEdges":{"default":true, "selectable":false},"licensedDatasets": true, "showAdvAnalysisContent":["drug-search", "enrichment-gprofiler", "enrichment-digest", "search-ndex"],"identifier":"symbol","showSimpleAnalysis":true, "title":"ROBUST output network", "taskDrugName": "Drug search", "showLegendNodes": true, "showLegendEdges": true, "showSidebar": "left", "showOverview": true, "legendPos": "left", "legendClass": "legend", "showQuery": true, "showItemSelector": true,"showSimpleAnalysis": true,"showAdvAnalysis": true,"showSelection": true,"showTasks": true,"showNetworkMenu": "right","showLegend": true,"showNetworkMenuButtonExpression": true, "showNetworkMenuButtonScreenshot": true,"showNetworkMenuButtonExportGraphml": true,"showNetworkMenuButtonAdjacentDrugs": true,"showNetworkMenuButtonCenter": true,"showConnectGenes": true,"networkMenuButtonAdjacentDrugsLabel": "Drugs","showNetworkMenuButtonAdjacentDisordersProteins": true,"networkMenuButtonAdjacentDisordersProteinsLabel": "Disorders (protein)","showNetworkMenuButtonAdjacentDisordersDrugs": true,"networkMenuButtonAdjacentDisordersDrugsLabel": "Disorders (drug)","showNetworkMenuButtonAnimation": true,"networkMenuButtonAnimationLabel": "Animation", "autofillEdges": false, "physicsOn": false,"useNedrexLicenced": true,"selfReferences": false, "interactionDrugProtein": "NeDRex", "indicationDrugDisorder": "NeDRex","nodeShadow": true,"edgeShadow": true, "algorithms": {"drug": ["trustrank", "closeness", "degree", "proximity"], "drug-target": ["trustrank", "multisteiner", "keypathwayminer", "degree", "closeness", "betweenness"]}, "associatedProteinDisorder": "NeDRex", "nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
network='{"nodes": [{"id": "DEFA1", "group": "gene"},{"id": "KDR", "group": "gene"},{"id": "DEFA1", "group": "gene"}, {"id": "CST6", "group": "gene"}, {"id": "IGFBP2", "group": "gene"}, {"id": "TNFSF8", "group": "gene"}, {"id": "COPRS", "group": "gene"}, {"id": "AGT", "group": "important"}, {"id": "IL6", "group": "important"}, {"id": "A2M", "group": "gene"}, {"id": "NLRP3", "group": "important"}, {"id": "TLR4", "group": "important"}, {"id": "TNFSF9", "group": "gene"}, {"id": "RPL18", "group": "gene"}, {"id": "F5", "group": "gene"}, {"id": "IVL", "group": "gene"}, {"id": "IL6R", "group": "gene"}, {"id": "CPB2", "group": "gene"}, {"id": "CCDC8", "group": "gene"}, {"id": "SERPINB6", "group": "gene"}, {"id": "MBL2", "group": "important"}, {"id": "IL1B", "group": "important"}, {"id": "HIST1H3E", "group": "gene"}, {"id": "IL24", "group": "gene"}, {"id": "GSDMB", "group": "gene"}, {"id": "NOTCH2", "group": "gene"}, {"id": "F2", "group": "important"}, {"id": "CCR5", "group": "important"}, 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{"from": "SERPINB8", "to": "FCF1", "group": "default"}, {"from": "IL1RN", "to": "FCF1", "group": "default"}, {"from": "PLAT", "to": "SERPINB2", "group": "default"}, {"from": "PLAT", "to": "FGL1", "group": "default"}, {"from": "PLAT", "to": "LAMA1", "group": "default"}, {"from": "FCF1", "to": "CALML3", "group": "default"}, {"from": "FCF1", "to": "SERPINB2", "group": "default"}, {"from": "FCF1", "to": "IGHG2", "group": "default"}, {"from": "FCF1", "to": "MYH14", "group": "default"}, {"from": "FCF1", "to": "RPL30", "group": "default"}, {"from": "FCF1", "to": "EPPK1", "group": "default"}, {"from": "THBS3", "to": "NDUFA3", "group": "default"}, {"from": "THBS3", "to": "FANCB", "group": "default"}, {"from": "CALML3", "to": "PARK2", "group": "default"}, {"from": "PSMA5", "to": "PARK2", "group": "default"}, {"from": "PSMA5", "to": "HEATR1", "group": "default"}, {"from": "PSMA5", "to": "PSMD1", "group": "default"}, {"from": "PSMA5", "to": "DARS", "group": "default"}, {"from": "NDUFA3", "to": 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</drugst-one>
diff --git a/src/index_static.html b/src/index_static.html
index 8e86251b0b880159065a156aeaccc5abdb4d9d88..0bbb54c413b2c3daeebe7f4caccd9ea6bc90a417 100644
--- a/src/index_static.html
+++ b/src/index_static.html
@@ -92,9 +92,9 @@
<div style="max-width: 80vw">
<drugst-one id="netexp1"
- pluginId="2"
- config='{"interactionDrugProtein":"NeDRex", "physicsOn":true, "showLeftSidebar": true, "showSimpleAnalysis":true, "nodeGroups":{"patient":{"type":"patient","color":"black","font":{"color":"#ffffff"},"groupName":"Patient","shape":"image","image":"https://static.thenounproject.com/png/22780-200.png"},"condition":{"type":"condition","color":"black","font":{"color":"black"},"groupName":"Condition","shape":"text"},"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Important Gene","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#ffffff"},"groupName":"Gene","shape":"circle"},"foundDrug":{"type":"drug","color":{"border":"#F12590","background":"#F12590"},"font":{"color":"#f0f0f0"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"genotype":{"color":"black","groupName":"Relevant Gene"},"has-condition":{"color":"#000000","groupName":"Has Condition","dashes":[2,2]},"default":{"color":"#000000","groupName":"default edge"},"ggi":{"color":"#000000","groupName":"Interaction","dashes":[3,2]}},"identifier":"symbol","title":"Breast cancer example network","nodeShadow":true,"edgeShadow":false,"autofillEdges":true,"showLegend":true}'
- network='{"nodes":[{"id":"HSDFHLHLK"},{"id":"patient-1","group":"patient","x":592,"y":446},{"id":"patient-2","group":"patient","x":235,"y":87},{"id":"patient-3","group":"patient","x":105,"y":369},{"id":"ATM","label":"ATM","group":"gene","x":289,"y":242},{"id":"BARD1","label":"BARD1","group":"gene","x":44,"y":250},{"id":"BRCA1","label":"BRCA1","group":"gene","x":466,"y":576},{"id":"BRCA2","label":"BRCA2","group":"gene","x":507,"y":285},{"id":"BRIP1","label":"BRIP1","group":"gene","x":54,"y":474},{"id":"CHEK2","label":"CHEK2","group":"gene","x":216,"y":590},{"id":"CDH1","label":"CDH1","group":"gene","x":320,"y":-57},{"id":"NF1","label":"NF1","group":"gene","x":481,"y":111},{"id":"NBN","label":"NBN","group":"gene","x":-57,"y":314},{"id":"PALB2","label":"PALB2","group":"gene","x":450,"y":190},{"id":"PTEN","label":"PTEN","group":"important","x":305,"y":494},{"id":"RAD51C","label":"RAD51C","group":"gene","x":182,"y":-90},{"id":"RAD51D","label":"RAD51D","group":"gene","x":368,"y":73},{"id":"STK11","label":"STK11","group":"gene","x":686,"y":330},{"id":"TP53","label":"TP53","group":"important","x":333,"y":316},{"id":"subtype-1","label":"Subtype 1","group":"condition","x":556,"y":171},{"id":"subtype-2","label":"Subtype 2","group":"condition","x":-87,"y":221}],"edges":[{"from":"BRCA1","to":"BRCA2","group":"ggi"},{"from":"ATM","to":"BARD1","group":"ggi"},{"from":"BRCA1","to":"CHEK2","group":"ggi"},{"from":"RAD51C","to":"RAD51D","group":"ggi"},{"from":"STK11","to":"TP53","group":"ggi"},{"from":"TP53","to":"PALB2","group":"ggi"},{"from":"TP53","to":"RAD51D","group":"ggi"},{"from":"TP53","to":"NF1","group":"ggi"},{"from":"TP53","to":"BRCA1","group":"ggi"},{"from":"TP53","to":"BRCA2","group":"ggi"},{"from":"PTEN","to":"BRCA1","group":"ggi"},{"from":"PTEN","to":"BRCA2","group":"ggi"},{"from":"TP53","to":"PTEN","group":"ggi"},{"from":"ATM","to":"PTEN","group":"ggi"},{"from":"CDH1","to":"RAD51D","group":"ggi"},{"from":"CDH1","to":"PALB2","group":"ggi"},{"from":"NBN","to":"BRIP1","group":"ggi"},{"from":"BRIP1","to":"PTEN","group":"ggi"},{"from":"patient-1","to":"BRCA1","group":"genotype"},{"from":"patient-1","to":"TP53","group":"genotype"},{"from":"patient-1","to":"BRCA2","group":"genotype"},{"from":"patient-1","to":"PTEN","group":"genotype"},{"from":"patient-2","to":"TP53","group":"genotype"},{"from":"patient-2","to":"NF1","group":"genotype"},{"from":"patient-2","to":"BARD1","group":"genotype"},{"from":"patient-3","to":"TP53","group":"genotype"},{"from":"patient-3","to":"PTEN","group":"genotype"},{"from":"patient-3","to":"NBN","group":"genotype"},{"from":"patient-1","to":"subtype-1","group":"has-condition"},{"from":"patient-2","to":"subtype-1","group":"has-condition"},{"from":"patient-3","to":"subtype-2","group":"has-condition"}]}'>
+ groups='{"nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
+ config='{"customEdges":{"default":true, "selectable":false},"licensedDatasets": true, "showAdvAnalysisContent":["drug-search", "enrichment-gprofiler", "enrichment-digest", "search-ndex"],"identifier":"symbol","showSimpleAnalysis":true, "title":"ROBUST output network", "taskDrugName": "Drug Search", "showLegendNodes": true, "showLegendEdges": true, "showSidebar": "left", "showOverview": true, "legendPos": "left", "legendClass": "legend", "showQuery": true, "showItemSelector": true,"showSimpleAnalysis": true,"showAdvAnalysis": true,"showSelection": true,"showTasks": true,"showNetworkMenu": "right","showLegend": true,"showNetworkMenuButtonExpression": true, "showNetworkMenuButtonScreenshot": true,"showNetworkMenuButtonExportGraphml": true,"showNetworkMenuButtonAdjacentDrugs": true,"showNetworkMenuButtonCenter": true,"showConnectGenes": true,"networkMenuButtonAdjacentDrugsLabel": "Drugs","showNetworkMenuButtonAdjacentDisordersProteins": true,"networkMenuButtonAdjacentDisordersProteinsLabel": "Disorders (protein)","showNetworkMenuButtonAdjacentDisordersDrugs": true,"networkMenuButtonAdjacentDisordersDrugsLabel": "Disorders (drug)","showNetworkMenuButtonAnimation": true,"networkMenuButtonAnimationLabel": "Animation", "autofillEdges": false, "physicsOn": false,"useNedrexLicenced": true,"selfReferences": false, "interactionDrugProtein": "NeDRex", "indicationDrugDisorder": "NeDRex","nodeShadow": true,"edgeShadow": true, "algorithms": {"drug": ["trustrank", "closeness", "degree", "proximity"], "drug-target": ["trustrank", "multisteiner", "keypathwayminer", "degree", "closeness", "betweenness"]}, "associatedProteinDisorder": "NeDRex", "nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
+ network='{"nodes": [{"id": "DEFA1", "group": "gene"},{"id": "KDR", "group": "gene"},{"id": "DEFA1", "group": "gene"}, {"id": "CST6", "group": "gene"}, {"id": "IGFBP2", "group": "gene"}, {"id": "TNFSF8", "group": "gene"}, {"id": "COPRS", "group": "gene"}, {"id": "AGT", "group": "important"}, {"id": "IL6", "group": "important"}, {"id": "A2M", "group": "gene"}, {"id": "NLRP3", "group": "important"}, {"id": "TLR4", "group": "important"}, {"id": "TNFSF9", "group": "gene"}, {"id": "RPL18", "group": "gene"}, {"id": "F5", "group": "gene"}, {"id": "IVL", "group": "gene"}, {"id": "IL6R", "group": "gene"}, {"id": "CPB2", "group": "gene"}, {"id": "CCDC8", "group": "gene"}, {"id": "SERPINB6", "group": "gene"}, {"id": "MBL2", "group": "important"}, {"id": "IL1B", "group": "important"}, {"id": "HIST1H3E", "group": "gene"}, {"id": "IL24", "group": "gene"}, {"id": "GSDMB", "group": "gene"}, {"id": "NOTCH2", "group": "gene"}, {"id": "F2", "group": "important"}, {"id": "CCR5", "group": "important"}, 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"group": "gene"}, {"id": "SSR3", "group": "gene"}, {"id": "REN", "group": "gene"}, {"id": "MYH14", "group": "gene"}, {"id": "TBCK", "group": "gene"}, {"id": "DARS", "group": "gene"}, {"id": "C16orf70", "group": "gene"}, {"id": "DQX1", "group": "gene"}, {"id": "RPL30", "group": "gene"}, {"id": "FBXO30", "group": "gene"}, {"id": "EPPK1", "group": "gene"}, {"id": "LAMA1", "group": "gene"}, {"id": "AP4E1", "group": "gene"}, {"id": "AP4S1", "group": "gene"}, {"id": "HIST1H1B", "group": "gene"}, {"id": "AFP", "group": "gene"}], "edges": [{"from": "DEFA1", "to": "PLAT", "group": "default"}, {"from": "DEFA1", "to": "IGFBP2", "group": "default"}, {"from": "CST6", "to": "FCF1", "group": "default"}, {"from": "CST6", "to": "NOTCH2", "group": "default"}, {"from": "IGFBP2", "to": "GSDMB", "group": "default"}, {"from": "TNFSF8", "to": "F5", "group": "default"}, {"from": "TNFSF8", "to": "TNFSF9", "group": "default"}, {"from": "COPRS", "to": "HIST1H3E", "group": "default"}, {"from": "COPRS", "to": "IL6R", "group": "default"}, {"from": "AGT", "to": "ACE", "group": "default"}, {"from": "AGT", "to": "GSDMB", "group": "default"}, {"from": "AGT", "to": "NDUFA3", "group": "default"}, {"from": "AGT", "to": "REN", "group": "default"}, {"from": "IL6", "to": "IL6R", "group": "default"}, {"from": "A2M", "to": "IL1B", "group": "default"}, {"from": "A2M", "to": "CPB2", "group": "default"}, {"from": "NLRP3", "to": "URB1", "group": "default"}, {"from": "NLRP3", "to": "HIST1H1B", "group": "default"}, {"from": "TLR4", "to": "TNFSF9", "group": "default"}, {"from": "TNFSF9", "to": "KLRG2", "group": "default"}, {"from": "RPL18", "to": "FCF1", "group": "default"}, {"from": "RPL18", "to": "URB1", "group": "default"}, {"from": "F5", "to": "F2", "group": "default"}, {"from": "F5", "to": "CCDC8", "group": "default"}, {"from": "F5", "to": "KLRG2", "group": "default"}, {"from": "IVL", "to": "FCF1", "group": "default"}, {"from": "IVL", "to": "KRT1", "group": "default"}, {"from": "IL6R", "to": "FANCB", "group": "default"}, {"from": "IL6R", "to": "CRYZL1", "group": "default"}, {"from": "IL6R", "to": "C17orf70", "group": "default"}, {"from": "IL6R", "to": "TBCK", "group": "default"}, {"from": "CPB2", "to": "F2", "group": "default"}, {"from": "CPB2", "to": "TINAG", "group": "default"}, {"from": "CCDC8", "to": "HEATR1", "group": "default"}, {"from": "CCDC8", "to": "PSMD1", "group": "default"}, {"from": "CCDC8", "to": "DARS", "group": "default"}, {"from": "SERPINB6", "to": "F2", "group": "default"}, {"from": "SERPINB6", "to": "SERPINB8", "group": "default"}, {"from": "SERPINB6", "to": "TMPRSS11A", "group": "default"}, {"from": "SERPINB6", "to": "C16orf70", "group": "default"}, {"from": "MBL2", "to": "KRT1", "group": "default"}, {"from": "IL24", "to": "NOTCH2", "group": "default"}, {"from": "IL24", "to": "CCR5", "group": "default"}, {"from": "F2", "to": "PLAT", "group": "default"}, {"from": "CCR5", "to": "PSMA5", "group": "default"}, {"from": "CCR5", "to": "AFP", "group": "default"}, {"from": "SERPINB8", "to": "FCF1", "group": "default"}, {"from": "IL1RN", "to": "FCF1", "group": "default"}, {"from": "PLAT", "to": "SERPINB2", "group": "default"}, {"from": "PLAT", "to": "FGL1", "group": "default"}, {"from": "PLAT", "to": "LAMA1", "group": "default"}, {"from": "FCF1", "to": "CALML3", "group": "default"}, {"from": "FCF1", "to": "SERPINB2", "group": "default"}, {"from": "FCF1", "to": "IGHG2", "group": "default"}, {"from": "FCF1", "to": "MYH14", "group": "default"}, {"from": "FCF1", "to": "RPL30", "group": "default"}, {"from": "FCF1", "to": "EPPK1", "group": "default"}, {"from": "THBS3", "to": "NDUFA3", "group": "default"}, {"from": "THBS3", "to": "FANCB", "group": "default"}, {"from": "CALML3", "to": "PARK2", "group": "default"}, {"from": "PSMA5", "to": "PARK2", "group": "default"}, {"from": "PSMA5", "to": "HEATR1", "group": "default"}, {"from": "PSMA5", "to": "PSMD1", "group": "default"}, {"from": "PSMA5", "to": "DARS", "group": "default"}, {"from": "NDUFA3", "to": "SLC18A1", "group": "default"}, {"from": "NDUFA3", "to": "DQX1", "group": "default"}, {"from": "FAM19A3", "to": "CRYZL1", "group": "default"}, {"from": "RSPRY1", "to": "TMPRSS11A", "group": "default"}, {"from": "RSPRY1", "to": "SLC18A1", "group": "default"}, {"from": "PCDHB15", "to": "SSR3", "group": "default"}, {"from": "PCDHB15", "to": "TBCK", "group": "default"}, {"from": "TSR3", "to": "FGL1", "group": "default"}, {"from": "TSR3", "to": "C7orf60", "group": "default"}, {"from": "C7orf60", "to": "REN", "group": "default"}, {"from": "SSR3", "to": "MYH14", "group": "default"}, {"from": "C16orf70", "to": "FBXO30", "group": "default"}, {"from": "DQX1", "to": "FBXO30", "group": "default"}, {"from": "LAMA1", "to": "AP4E1", "group": "default"}, {"from": "AP4E1", "to": "AP4S1", "group": "default"}, {"from": "AP4S1", "to": "AFP", "group": "default"}]}'>
</drugst-one>
</div>
diff --git a/src/stylesheets/styles.scss b/src/stylesheets/styles.scss
index 097d9cae5a124b8e61c4ffe402fc3e6b7b3386a1..97a4e83c39a8505822cfb0d860196dff80ebe21c 100644
--- a/src/stylesheets/styles.scss
+++ b/src/stylesheets/styles.scss
@@ -25,7 +25,6 @@
border-color: var(--drgstn-primary) !important;
}
-
.drgstn-box-shadow {
box-shadow: 0 0.125em 0.25em hsla(0, 0%, 4%, 0.1);
}