diff --git a/package-lock.json b/package-lock.json
index fdd341378ced0e43ec5a110d8fe363332177f911..489028a483607377026c4fd89c41760d85f0292a 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -2858,6 +2858,7 @@
"version": "2.1.0",
"resolved": "https://registry.npmjs.org/@npmcli/git/-/git-2.1.0.tgz",
"integrity": "sha512-/hBFX/QG1b+N7PZBFs0bi+evgRZcK9nWBxQKZkGoXUT5hJSwl5c4d7y8/hm+NQZRPhQ67RzFaj5UM9YeyKoryw==",
+ "dev": true,
"dependencies": {
"@npmcli/promise-spawn": "^1.3.2",
"lru-cache": "^6.0.0",
@@ -2873,6 +2874,7 @@
"version": "6.0.0",
"resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-6.0.0.tgz",
"integrity": "sha512-Jo6dJ04CmSjuznwJSS3pUeWmd/H0ffTlkXXgwZi+eq1UCmqQwCh+eLsYOYCwY991i2Fah4h1BEMCx4qThGbsiA==",
+ "dev": true,
"dependencies": {
"yallist": "^4.0.0"
},
@@ -2884,6 +2886,7 @@
"version": "2.0.2",
"resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
"integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
+ "dev": true,
"dependencies": {
"isexe": "^2.0.0"
},
@@ -2897,12 +2900,14 @@
"node_modules/@npmcli/git/node_modules/yallist": {
"version": "4.0.0",
"resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz",
- "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
+ "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==",
+ "dev": true
},
"node_modules/@npmcli/installed-package-contents": {
"version": "1.0.7",
"resolved": "https://registry.npmjs.org/@npmcli/installed-package-contents/-/installed-package-contents-1.0.7.tgz",
"integrity": "sha512-9rufe0wnJusCQoLpV9ZPKIVP55itrM5BxOXs10DmdbRfgWtHy1LDyskbwRnBghuB0PrF7pNPOqREVtpz4HqzKw==",
+ "dev": true,
"dependencies": {
"npm-bundled": "^1.1.1",
"npm-normalize-package-bin": "^1.0.1"
@@ -2919,6 +2924,7 @@
"resolved": "https://registry.npmjs.org/@npmcli/move-file/-/move-file-1.1.2.tgz",
"integrity": "sha512-1SUf/Cg2GzGDyaf15aR9St9TWlb+XvbZXWpDx8YKs7MLzMH/BCeopv+y9vzrzgkfykCGuWOlSu3mZhj2+FQcrg==",
"deprecated": "This functionality has been moved to @npmcli/fs",
+ "dev": true,
"dependencies": {
"mkdirp": "^1.0.4",
"rimraf": "^3.0.2"
@@ -2930,12 +2936,14 @@
"node_modules/@npmcli/node-gyp": {
"version": "1.0.3",
"resolved": "https://registry.npmjs.org/@npmcli/node-gyp/-/node-gyp-1.0.3.tgz",
- "integrity": "sha512-fnkhw+fmX65kiLqk6E3BFLXNC26rUhK90zVwe2yncPliVT/Qos3xjhTLE59Df8KnPlcwIERXKVlU1bXoUQ+liA=="
+ "integrity": "sha512-fnkhw+fmX65kiLqk6E3BFLXNC26rUhK90zVwe2yncPliVT/Qos3xjhTLE59Df8KnPlcwIERXKVlU1bXoUQ+liA==",
+ "dev": true
},
"node_modules/@npmcli/promise-spawn": {
"version": "1.3.2",
"resolved": "https://registry.npmjs.org/@npmcli/promise-spawn/-/promise-spawn-1.3.2.tgz",
"integrity": "sha512-QyAGYo/Fbj4MXeGdJcFzZ+FkDkomfRBrPM+9QYJSg+PxgAUL+LU3FneQk37rKR2/zjqkCV1BLHccX98wRXG3Sg==",
+ "dev": true,
"dependencies": {
"infer-owner": "^1.0.4"
}
@@ -2944,6 +2952,7 @@
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/@npmcli/run-script/-/run-script-2.0.0.tgz",
"integrity": "sha512-fSan/Pu11xS/TdaTpTB0MRn9guwGU8dye+x56mEVgBEd/QsybBbYcAL0phPXi8SGWFEChkQd6M9qL4y6VOpFig==",
+ "dev": true,
"dependencies": {
"@npmcli/node-gyp": "^1.0.2",
"@npmcli/promise-spawn": "^1.3.2",
@@ -2977,6 +2986,7 @@
"version": "1.1.2",
"resolved": "https://registry.npmjs.org/@tootallnate/once/-/once-1.1.2.tgz",
"integrity": "sha512-RbzJvlNzmRq5c3O09UipeuXno4tA1FE6ikOjxZK0tuxVv3412l64l5t1W5pj4+rJq9vpkm/kwiR07aZXnsKPxw==",
+ "dev": true,
"engines": {
"node": ">= 6"
}
@@ -3373,7 +3383,8 @@
"node_modules/abbrev": {
"version": "1.1.1",
"resolved": "https://registry.npmjs.org/abbrev/-/abbrev-1.1.1.tgz",
- "integrity": "sha512-nne9/IiQ/hzIhY6pdDnbBtz7DjPTKrY00P/zvPSm5pOFkl6xuGrGnXn/VtTNNfNtAfZ9/1RtehkszU9qcTii0Q=="
+ "integrity": "sha512-nne9/IiQ/hzIhY6pdDnbBtz7DjPTKrY00P/zvPSm5pOFkl6xuGrGnXn/VtTNNfNtAfZ9/1RtehkszU9qcTii0Q==",
+ "dev": true
},
"node_modules/accepts": {
"version": "1.3.8",
@@ -3435,6 +3446,7 @@
"version": "6.0.2",
"resolved": "https://registry.npmjs.org/agent-base/-/agent-base-6.0.2.tgz",
"integrity": "sha512-RZNwNclF7+MS/8bDg70amg32dyeZGZxiDuQmZxKLAlQjr3jGyLx+4Kkk58UO7D2QdgFIQCovuSuZESne6RG6XQ==",
+ "dev": true,
"dependencies": {
"debug": "4"
},
@@ -3446,6 +3458,7 @@
"version": "4.2.1",
"resolved": "https://registry.npmjs.org/agentkeepalive/-/agentkeepalive-4.2.1.tgz",
"integrity": "sha512-Zn4cw2NEqd+9fiSVWMscnjyQ1a8Yfoc5oBajLeo5w+YBHgDUcEBY2hS4YpTz6iN5f/2zQiktcuM6tS8x1p9dpA==",
+ "dev": true,
"dependencies": {
"debug": "^4.1.0",
"depd": "^1.1.2",
@@ -3459,6 +3472,7 @@
"version": "1.1.2",
"resolved": "https://registry.npmjs.org/depd/-/depd-1.1.2.tgz",
"integrity": "sha512-7emPTl6Dpo6JRXOXjLRxck+FlLRX5847cLKEn00PLAgc3g2hTZZgr+e4c2v6QpSmLeFP3n5yUo7ft6avBK/5jQ==",
+ "dev": true,
"engines": {
"node": ">= 0.6"
}
@@ -3467,6 +3481,7 @@
"version": "3.1.0",
"resolved": "https://registry.npmjs.org/aggregate-error/-/aggregate-error-3.1.0.tgz",
"integrity": "sha512-4I7Td01quW/RpocfNayFdFVk1qSuoh0E7JrbRJ16nH01HhKFQ88INq9Sd+nd72zqRySlr9BmDA8xlEJ6vJMrYA==",
+ "dev": true,
"dependencies": {
"clean-stack": "^2.0.0",
"indent-string": "^4.0.0"
@@ -3601,12 +3616,14 @@
"node_modules/aproba": {
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/aproba/-/aproba-2.0.0.tgz",
- "integrity": "sha512-lYe4Gx7QT+MKGbDsA+Z+he/Wtef0BiwDOlK/XkBrdfsh9J/jPPXbX0tE9x9cl27Tmu5gg3QUbUrQYa/y+KOHPQ=="
+ "integrity": "sha512-lYe4Gx7QT+MKGbDsA+Z+he/Wtef0BiwDOlK/XkBrdfsh9J/jPPXbX0tE9x9cl27Tmu5gg3QUbUrQYa/y+KOHPQ==",
+ "dev": true
},
"node_modules/are-we-there-yet": {
"version": "3.0.1",
"resolved": "https://registry.npmjs.org/are-we-there-yet/-/are-we-there-yet-3.0.1.tgz",
"integrity": "sha512-QZW4EDmGwlYur0Yyf/b2uGucHQMa8aFUP7eu9ddR73vvhFyt4V0Vl3QHPcTNJ8l6qYOBdxgXdnBXQrHilfRQBg==",
+ "dev": true,
"dependencies": {
"delegates": "^1.0.0",
"readable-stream": "^3.6.0"
@@ -4278,7 +4295,8 @@
"node_modules/builtins": {
"version": "1.0.3",
"resolved": "https://registry.npmjs.org/builtins/-/builtins-1.0.3.tgz",
- "integrity": "sha512-uYBjakWipfaO/bXI7E8rq6kpwHRZK5cNYrUv2OzZSI/FvmdMyXJ2tG9dKcjEC5YHmHpUAwsargWIZNWdxb/bnQ=="
+ "integrity": "sha512-uYBjakWipfaO/bXI7E8rq6kpwHRZK5cNYrUv2OzZSI/FvmdMyXJ2tG9dKcjEC5YHmHpUAwsargWIZNWdxb/bnQ==",
+ "dev": true
},
"node_modules/bulma": {
"version": "0.9.4",
@@ -4308,6 +4326,7 @@
"version": "15.2.0",
"resolved": "https://registry.npmjs.org/cacache/-/cacache-15.2.0.tgz",
"integrity": "sha512-uKoJSHmnrqXgthDFx/IU6ED/5xd+NNGe+Bb+kLZy7Ku4P+BaiWEUflAKPZ7eAzsYGcsAGASJZsybXp+quEcHTw==",
+ "dev": true,
"dependencies": {
"@npmcli/move-file": "^1.0.1",
"chownr": "^2.0.0",
@@ -4335,6 +4354,7 @@
"version": "6.0.0",
"resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-6.0.0.tgz",
"integrity": "sha512-Jo6dJ04CmSjuznwJSS3pUeWmd/H0ffTlkXXgwZi+eq1UCmqQwCh+eLsYOYCwY991i2Fah4h1BEMCx4qThGbsiA==",
+ "dev": true,
"dependencies": {
"yallist": "^4.0.0"
},
@@ -4345,7 +4365,8 @@
"node_modules/cacache/node_modules/yallist": {
"version": "4.0.0",
"resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz",
- "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
+ "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==",
+ "dev": true
},
"node_modules/cache-base": {
"version": "1.0.1",
@@ -4485,6 +4506,7 @@
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/chownr/-/chownr-2.0.0.tgz",
"integrity": "sha512-bIomtDF5KGpdogkLd9VspvFzk9KfpyyGlS8YFVZl7TGPBHL5snIOnxeshwVgPteQ9b4Eydl+pVbIyE1DcvCWgQ==",
+ "dev": true,
"engines": {
"node": ">=10"
}
@@ -4612,6 +4634,7 @@
"version": "2.2.0",
"resolved": "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz",
"integrity": "sha512-4diC9HaTE+KRAMWhDhrGOECgWZxoevMc5TlkObMqNSsVU62PYzXZ/SMTjzyGAFF1YusgxGcSWTEXBhp0CPwQ1A==",
+ "dev": true,
"engines": {
"node": ">=6"
}
@@ -4772,6 +4795,7 @@
"version": "1.1.3",
"resolved": "https://registry.npmjs.org/color-support/-/color-support-1.1.3.tgz",
"integrity": "sha512-qiBjkpbMLO/HL68y+lh4q0/O1MZFj2RX6X/KmMa3+gJD3z+WwI1ZzDHysvqHGS3mP6mznPckpXmw1nI9cJjyRg==",
+ "dev": true,
"bin": {
"color-support": "bin.js"
}
@@ -4949,7 +4973,8 @@
"node_modules/console-control-strings": {
"version": "1.1.0",
"resolved": "https://registry.npmjs.org/console-control-strings/-/console-control-strings-1.1.0.tgz",
- "integrity": "sha512-ty/fTekppD2fIwRvnZAVdeOiGd1c7YXEixbgJTNzqcxJWKQnjJ/V1bNEEE6hygpM3WjwHFUVK6HTjWSzV4a8sQ=="
+ "integrity": "sha512-ty/fTekppD2fIwRvnZAVdeOiGd1c7YXEixbgJTNzqcxJWKQnjJ/V1bNEEE6hygpM3WjwHFUVK6HTjWSzV4a8sQ==",
+ "dev": true
},
"node_modules/content-disposition": {
"version": "0.5.4",
@@ -6009,7 +6034,8 @@
"node_modules/delegates": {
"version": "1.0.0",
"resolved": "https://registry.npmjs.org/delegates/-/delegates-1.0.0.tgz",
- "integrity": "sha512-bd2L678uiWATM6m5Z1VzNCErI3jiGzt6HGY8OVICs40JQq/HALfbyNJmp0UDakEY4pMMaN0Ly5om/B1VI/+xfQ=="
+ "integrity": "sha512-bd2L678uiWATM6m5Z1VzNCErI3jiGzt6HGY8OVICs40JQq/HALfbyNJmp0UDakEY4pMMaN0Ly5om/B1VI/+xfQ==",
+ "dev": true
},
"node_modules/depd": {
"version": "2.0.0",
@@ -6228,6 +6254,7 @@
"version": "0.1.13",
"resolved": "https://registry.npmjs.org/encoding/-/encoding-0.1.13.tgz",
"integrity": "sha512-ETBauow1T35Y/WZMkio9jiM0Z5xjHHmJ4XmjZOq1l/dXz3lr2sRn87nJy20RupqSh1F2m3HHPSp8ShIPQJrJ3A==",
+ "dev": true,
"optional": true,
"dependencies": {
"iconv-lite": "^0.6.2"
@@ -6237,6 +6264,7 @@
"version": "0.6.3",
"resolved": "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.6.3.tgz",
"integrity": "sha512-4fCk79wshMdzMp2rH06qWrJE4iolqLhCUH+OiuIgU++RB0+94NlDL81atO7GX55uUKueo0txHNtvEyI6D7WdMw==",
+ "dev": true,
"optional": true,
"dependencies": {
"safer-buffer": ">= 2.1.2 < 3.0.0"
@@ -6316,6 +6344,7 @@
"version": "2.2.1",
"resolved": "https://registry.npmjs.org/env-paths/-/env-paths-2.2.1.tgz",
"integrity": "sha512-+h1lkLKhZMTYjog1VEpJNG7NZJWcuc2DDk/qsqSTRRCOXiLjeQ1d1/udrUGhqMxUgAlwKNZ0cf2uqan5GLuS2A==",
+ "dev": true,
"engines": {
"node": ">=6"
}
@@ -6323,7 +6352,8 @@
"node_modules/err-code": {
"version": "2.0.3",
"resolved": "https://registry.npmjs.org/err-code/-/err-code-2.0.3.tgz",
- "integrity": "sha512-2bmlRpNKBxT/CRmPOlyISQpNj+qSeYvcym/uT0Jx2bMOlKLtSy1ZmLuVxSEKKyor/N5yhvp/ZiG1oE3DEYMSFA=="
+ "integrity": "sha512-2bmlRpNKBxT/CRmPOlyISQpNj+qSeYvcym/uT0Jx2bMOlKLtSy1ZmLuVxSEKKyor/N5yhvp/ZiG1oE3DEYMSFA==",
+ "dev": true
},
"node_modules/errno": {
"version": "0.1.8",
@@ -7389,6 +7419,7 @@
"version": "2.1.0",
"resolved": "https://registry.npmjs.org/fs-minipass/-/fs-minipass-2.1.0.tgz",
"integrity": "sha512-V/JgOLFCS+R6Vcq0slCuaeWEdNC3ouDlJMNIsacH2VtALiu9mV4LPrHc5cDl8k5aw6J8jwgWWpiTo5RYhmIzvg==",
+ "dev": true,
"dependencies": {
"minipass": "^3.0.0"
},
@@ -7438,6 +7469,7 @@
"version": "4.0.4",
"resolved": "https://registry.npmjs.org/gauge/-/gauge-4.0.4.tgz",
"integrity": "sha512-f9m+BEN5jkg6a0fZjleidjN51VE1X+mPFQ2DJ0uv1V39oCLCbsGe6yjbBnp7eK7z/+GAon99a3nHuqbuuthyPg==",
+ "dev": true,
"dependencies": {
"aproba": "^1.0.3 || ^2.0.0",
"color-support": "^1.1.3",
@@ -7579,7 +7611,8 @@
"node_modules/graceful-fs": {
"version": "4.2.10",
"resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.10.tgz",
- "integrity": "sha512-9ByhssR2fPVsNZj478qUUbKfmL0+t5BDVyjShtyZZLiK7ZDAArFFfopyOTj0M05wE2tJPisA4iTnnXl2YoPvOA=="
+ "integrity": "sha512-9ByhssR2fPVsNZj478qUUbKfmL0+t5BDVyjShtyZZLiK7ZDAArFFfopyOTj0M05wE2tJPisA4iTnnXl2YoPvOA==",
+ "dev": true
},
"node_modules/handle-thing": {
"version": "2.0.1",
@@ -7714,7 +7747,8 @@
"node_modules/has-unicode": {
"version": "2.0.1",
"resolved": "https://registry.npmjs.org/has-unicode/-/has-unicode-2.0.1.tgz",
- "integrity": "sha512-8Rf9Y83NBReMnx0gFzA8JImQACstCYWUplepDa9xprwwtmgEZUF0h/i5xSA625zB/I37EtrswSST6OXxwaaIJQ=="
+ "integrity": "sha512-8Rf9Y83NBReMnx0gFzA8JImQACstCYWUplepDa9xprwwtmgEZUF0h/i5xSA625zB/I37EtrswSST6OXxwaaIJQ==",
+ "dev": true
},
"node_modules/has-value": {
"version": "1.0.0",
@@ -7800,6 +7834,7 @@
"version": "4.1.0",
"resolved": "https://registry.npmjs.org/hosted-git-info/-/hosted-git-info-4.1.0.tgz",
"integrity": "sha512-kyCuEOWjJqZuDbRHzL8V93NzQhwIB71oFWSyzVo+KPZI+pnQPPxucdkrOZvkLRnrf5URsQM+IJ09Dw29cRALIA==",
+ "dev": true,
"dependencies": {
"lru-cache": "^6.0.0"
},
@@ -7811,6 +7846,7 @@
"version": "6.0.0",
"resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-6.0.0.tgz",
"integrity": "sha512-Jo6dJ04CmSjuznwJSS3pUeWmd/H0ffTlkXXgwZi+eq1UCmqQwCh+eLsYOYCwY991i2Fah4h1BEMCx4qThGbsiA==",
+ "dev": true,
"dependencies": {
"yallist": "^4.0.0"
},
@@ -7821,7 +7857,8 @@
"node_modules/hosted-git-info/node_modules/yallist": {
"version": "4.0.0",
"resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz",
- "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
+ "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==",
+ "dev": true
},
"node_modules/hpack.js": {
"version": "2.1.6",
@@ -7998,7 +8035,8 @@
"node_modules/http-cache-semantics": {
"version": "4.1.0",
"resolved": "https://registry.npmjs.org/http-cache-semantics/-/http-cache-semantics-4.1.0.tgz",
- "integrity": "sha512-carPklcUh7ROWRK7Cv27RPtdhYhUsela/ue5/jKzjegVvXDqM2ILE9Q2BGn9JZJh1g87cp56su/FgQSzcWS8cQ=="
+ "integrity": "sha512-carPklcUh7ROWRK7Cv27RPtdhYhUsela/ue5/jKzjegVvXDqM2ILE9Q2BGn9JZJh1g87cp56su/FgQSzcWS8cQ==",
+ "dev": true
},
"node_modules/http-deceiver": {
"version": "1.2.7",
@@ -8055,6 +8093,7 @@
"version": "4.0.1",
"resolved": "https://registry.npmjs.org/http-proxy-agent/-/http-proxy-agent-4.0.1.tgz",
"integrity": "sha512-k0zdNgqWTGA6aeIRVpvfVob4fL52dTfaehylg0Y4UvSySvOq/Y+BOyPrgpUrA7HylqvU8vIZGsRuXmspskV0Tg==",
+ "dev": true,
"dependencies": {
"@tootallnate/once": "1",
"agent-base": "6",
@@ -8228,6 +8267,7 @@
"version": "5.0.0",
"resolved": "https://registry.npmjs.org/https-proxy-agent/-/https-proxy-agent-5.0.0.tgz",
"integrity": "sha512-EkYm5BcKUGiduxzSt3Eppko+PiNWNEpa4ySk9vTC6wDsQJW9rHSa+UhGNJoRYp7bz6Ht1eaRIa6QaJqO5rCFbA==",
+ "dev": true,
"dependencies": {
"agent-base": "6",
"debug": "4"
@@ -8240,6 +8280,7 @@
"version": "1.2.1",
"resolved": "https://registry.npmjs.org/humanize-ms/-/humanize-ms-1.2.1.tgz",
"integrity": "sha512-Fl70vYtsAFb/C06PTS9dZBo7ihau+Tu/DNCk/OyHhea07S+aeMWpFFkUaXRa8fI+ScZbEI8dfSxwY7gxZ9SAVQ==",
+ "dev": true,
"dependencies": {
"ms": "^2.0.0"
}
@@ -8301,6 +8342,7 @@
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+ "dev": true,
"bin": {
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+ "dev": true,
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+ "dev": true,
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+ "dev": true
},
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+ "dev": true,
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+ "dev": true,
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+ "dev": true,
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+ "dev": true,
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+ "dev": true,
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+ "dev": true
},
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+ "dev": true,
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+ "dev": true
}
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+ "dev": true
},
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@@ -23627,7 +23748,8 @@
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+ "dev": true,
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+ "dev": true,
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@@ -23685,7 +23809,8 @@
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+ "dev": true
}
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@@ -26821,7 +26969,8 @@
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+ "dev": true
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@@ -27462,7 +27616,8 @@
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+ "dev": true,
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+ "dev": true,
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+ "dev": true,
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}
@@ -28314,6 +28479,7 @@
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+ "dev": true,
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+ "dev": true,
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@@ -28330,7 +28497,8 @@
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+ "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==",
+ "dev": true
}
}
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+ "integrity": "sha512-vVqVZQyf3WLx2Shd0qJ9xuvqgAyKPLAiqITEtqW0oIUjzo3PePDd6fW9iFz30ef7Ysp/oiWqbhszeGWW2T6Gzw==",
+ "dev": true
},
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@@ -28435,7 +28604,8 @@
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+ "dev": true
},
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+ "dev": true,
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+ "dev": true,
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}
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+ "dev": true,
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}
@@ -30128,6 +30301,7 @@
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+ "dev": true,
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}
@@ -30136,6 +30310,7 @@
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+ "dev": true,
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+ "dev": true
},
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+ "dev": true,
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@@ -30159,6 +30336,7 @@
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+ "dev": true,
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@@ -30170,6 +30348,7 @@
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+ "dev": true,
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@@ -30181,6 +30360,7 @@
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+ "dev": true,
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"minipass": "^3.1.3",
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+ "dev": true,
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@@ -30530,6 +30711,7 @@
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+ "dev": true,
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}
@@ -30553,6 +30735,7 @@
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+ "dev": true,
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@@ -32115,12 +32298,14 @@
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+ "integrity": "sha512-6zWPyEOFaQBJYcGMHBKTKJ3u6TBsnMFOIZSa6ce1e/ZrrsOlnHRHbabMjLiBYKp+n44X9eUI6VUPaukCXHuG4g==",
+ "dev": true
},
"promise-retry": {
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"resolved": "https://registry.npmjs.org/promise-retry/-/promise-retry-2.0.1.tgz",
"integrity": "sha512-y+WKFlBR8BGXnsNlIHFGPZmyDf3DFMoLhaflAnyZgV6rG6xu+JwesTo2Q9R6XwYmtmwAFCkAk3e35jEdoeh/3g==",
+ "dev": true,
"requires": {
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@@ -32486,6 +32671,7 @@
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+ "dev": true,
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"npm-normalize-package-bin": "^1.0.1"
@@ -32495,6 +32681,7 @@
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+ "dev": true,
"requires": {
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"string_decoder": "^1.1.1",
@@ -32779,7 +32966,8 @@
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"resolved": "https://registry.npmjs.org/retry/-/retry-0.12.0.tgz",
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+ "integrity": "sha512-9LkiTwjUh6rT555DtE9rTX+BKByPfrMzEAtnlEtdEwr3Nkffwiihqe2bWADg+OQRjt9gl6ICdmB/ZFDCGAtSow==",
+ "dev": true
},
"reusify": {
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@@ -32797,6 +32985,7 @@
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+ "dev": true,
"requires": {
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}
@@ -32834,7 +33023,8 @@
"safe-buffer": {
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"resolved": "https://registry.npmjs.org/safe-buffer/-/safe-buffer-5.2.1.tgz",
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+ "integrity": "sha512-rp3So07KcdmmKbGvgaNxQSJr7bGVSVk5S9Eq1F+ppbRo70+YeaDxkw5Dd8NPN+GD6bjnYm2VuPuCXmpuYvmCXQ==",
+ "dev": true
},
"safe-regex": {
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@@ -32849,7 +33039,7 @@
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- "devOptional": true
+ "dev": true
},
"sass": {
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@@ -33184,7 +33374,8 @@
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"resolved": "https://registry.npmjs.org/set-blocking/-/set-blocking-2.0.0.tgz",
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+ "integrity": "sha512-KiKBS8AnWGEyLzofFfmvKwpdPzqiy16LvQfK3yv/fVH7Bj13/wl3JSR1J+rfgRE9q7xUJK4qvgS8raSOeLUehw==",
+ "dev": true
},
"set-value": {
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@@ -33265,7 +33456,8 @@
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+ "integrity": "sha512-wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ==",
+ "dev": true
},
"slash": {
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@@ -33276,7 +33468,8 @@
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"resolved": "https://registry.npmjs.org/smart-buffer/-/smart-buffer-4.2.0.tgz",
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+ "integrity": "sha512-94hK0Hh8rPqQl2xXc3HsaBoOXKV20MToPkcXvwbISWLEs+64sBq5kFgn2kJDHb1Pry9yrP0dxrCI9RRci7RXKg==",
+ "dev": true
},
"snapdragon": {
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@@ -33509,6 +33702,7 @@
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+ "dev": true,
"requires": {
"ip": "^2.0.0",
"smart-buffer": "^4.2.0"
@@ -33518,6 +33712,7 @@
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+ "dev": true,
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"debug": "^4.3.3",
@@ -33528,6 +33723,7 @@
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+ "dev": true,
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}
@@ -33679,6 +33875,7 @@
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+ "dev": true,
"requires": {
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}
@@ -33825,6 +34022,7 @@
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+ "dev": true,
"requires": {
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}
@@ -33985,6 +34183,7 @@
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+ "dev": true,
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"chownr": "^2.0.0",
"fs-minipass": "^2.0.0",
@@ -33998,6 +34197,7 @@
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"integrity": "sha512-g2Uuh2jEKoht+zvO6vJqXmYpflPqzRBT+Th2h01DKh5z7wbY/AZ2gCQ78cP70YoHPyFdY30YBV5WxgLOEwOykw==",
+ "dev": true,
"requires": {
"yallist": "^4.0.0"
}
@@ -34005,7 +34205,8 @@
"yallist": {
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"resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz",
- "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
+ "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==",
+ "dev": true
}
}
},
@@ -34100,7 +34301,8 @@
"text-table": {
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"resolved": "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz",
- "integrity": "sha512-N+8UisAXDGk8PFXP4HAzVR9nbfmVJ3zYLAWiTIoqC5v5isinhr+r5uaO8+7r3BMfuNIufIsA7RdpVgacC2cSpw=="
+ "integrity": "sha512-N+8UisAXDGk8PFXP4HAzVR9nbfmVJ3zYLAWiTIoqC5v5isinhr+r5uaO8+7r3BMfuNIufIsA7RdpVgacC2cSpw==",
+ "dev": true
},
"through": {
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@@ -34403,6 +34605,7 @@
"version": "1.1.1",
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"integrity": "sha512-Vmp0jIp2ln35UTXuryvjzkjGdRyf9b2lTXuSYUiPmzRcl3FDtYqAwOnTJkAngD9SWhnoJzDbTKwaOrZ+STtxNQ==",
+ "dev": true,
"requires": {
"unique-slug": "^2.0.0"
}
@@ -34411,6 +34614,7 @@
"version": "2.0.2",
"resolved": "https://registry.npmjs.org/unique-slug/-/unique-slug-2.0.2.tgz",
"integrity": "sha512-zoWr9ObaxALD3DOPfjPSqxt4fnZiWblxHIgeWqW8x7UqDzEtHEQLzji2cuJYQFCU6KmoJikOYAZlrTHHebjx2w==",
+ "dev": true,
"requires": {
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}
@@ -34541,7 +34745,8 @@
"util-deprecate": {
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"resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
- "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw=="
+ "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==",
+ "dev": true
},
"utils-merge": {
"version": "1.0.1",
@@ -34559,6 +34764,7 @@
"version": "3.0.0",
"resolved": "https://registry.npmjs.org/validate-npm-package-name/-/validate-npm-package-name-3.0.0.tgz",
"integrity": "sha512-M6w37eVCMMouJ9V/sdPGnC5H4uDr73/+xdq0FBLO3TFFX1+7wiUY6Es328NN+y43tmY+doUdN9g9J21vqB7iLw==",
+ "dev": true,
"requires": {
"builtins": "^1.0.3"
}
@@ -35562,6 +35768,7 @@
"version": "1.3.1",
"resolved": "https://registry.npmjs.org/which/-/which-1.3.1.tgz",
"integrity": "sha512-HxJdYWq1MTIQbJ3nw0cqssHoTNU267KlrDuGZ1WYlxDStUtKUhOaJmh112/TZmHxxUfuJqPXSOm7tDyas0OSIQ==",
+ "dev": true,
"requires": {
"isexe": "^2.0.0"
}
@@ -35576,6 +35783,7 @@
"version": "1.1.5",
"resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.5.tgz",
"integrity": "sha512-eDMORYaPNZ4sQIuuYPDHdQvf4gyCF9rEEV/yPxGfwPkRodwEgiMUUXTx/dex+Me0wxx53S+NgUHaP7y3MGlDmg==",
+ "dev": true,
"requires": {
"string-width": "^1.0.2 || 2 || 3 || 4"
}
diff --git a/releases/release_tag.sh b/releases/release_tag.sh
index 74ee6d4ebcb5342b9baa834285ce0a0305e01c14..7f3b570e28a98c63bacabecddb61619ff75e6321 100755
--- a/releases/release_tag.sh
+++ b/releases/release_tag.sh
@@ -18,9 +18,13 @@ MESSAGE=$2
echo "Committing all changes"
git commit -am "$MESSAGE"
+echo "Updating version.ts"
+echo "export const version = 'v$1';"
+
echo "Tagging Version..."
npm version "$1" -m "$MESSAGE"
git push
+
echo "Releasing Version..."
git push origin "$VERSION"
diff --git a/src/app/components/analysis-panel/analysis-panel.component.html b/src/app/components/analysis-panel/analysis-panel.component.html
index 100ab091212351ef47ada2183022b5be8be4a22f..ca9f8736f928763b637e4b45938606268fb56e97 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.html
+++ b/src/app/components/analysis-panel/analysis-panel.component.html
@@ -74,6 +74,7 @@
[ngClass]="{ 'text-small': drugstoneConfig.smallStyle }" tooltipPosition="left"
[tooltipStyleClass]="'drgstn drgstn-tooltip drgstn-tooltip-left'" target="_blank"
href="https://drugst.one/home">About Drugst.One</a>
+ <b *ngIf="versionString" class="version-text dropdown-item">{{versionString}}</b>
</div>
</div>
</div>
@@ -127,11 +128,11 @@
title="Algorithm"
></app-fa-solid-icon>
{{
- ["quick", "super", "connect", "connectSelected"].indexOf(
- task.info.algorithm
- ) === -1
- ? "Algorithm:"
- : "Method:"
+ ["quick", "super", "connect", "connectSelected"].indexOf(
+ task.info.algorithm
+ ) === -1
+ ? "Algorithm:"
+ : "Method:"
}}
{{ algorithmNames[task.info.algorithm] }}
</h4>
@@ -139,26 +140,52 @@
</div>
<div class="columns m-1">
<div class="column">
- <table class="table parameter-table">
+ <table class="table parameter-table" *ngIf="['quick', 'super', 'connect', 'connectSelected'].includes(task.info.algorithm)">
<tbody>
- <tr
- *ngIf="result && result.geneInteractionDataset !== undefined"
- >
- <td>Protein-Protein Interaction Dataset</td>
- <td>
- {{ result.geneInteractionDataset.name }} (Version
- {{ result.geneInteractionDataset.version }})
- </td>
- </tr>
- <tr
- *ngIf="result && result.drugInteractionDataset !== undefined"
- >
- <td>Protein-Drug Interaction Dataset</td>
- <td>
- {{ result.drugInteractionDataset.name }} (Version
- {{ result.drugInteractionDataset.version }})
- </td>
- </tr>
+ <tr
+ *ngIf="result && result.geneInteractionDataset !== undefined"
+ >
+ <td>Protein-Protein Interaction Dataset</td>
+ <td>
+ {{ result.geneInteractionDataset.name }}{{ result.geneInteractionDataset.licenced ? " (licensed)" : ""}}
+ [Version
+ {{ result.geneInteractionDataset.version }}]
+ </td>
+ </tr>
+ <tr
+ *ngIf="result && result.drugInteractionDataset !== undefined"
+ >
+ <td>Protein-Drug Interaction Dataset</td>
+ <td>
+ {{ result.drugInteractionDataset.name }}{{ result.drugInteractionDataset.licenced ? " (licensed)" : ""}}
+ [Version
+ {{ result.drugInteractionDataset.version }}]
+ </td>
+ </tr>
+ </tbody>
+ </table>
+ <table class="table parameter-table" *ngIf="!['quick', 'super', 'connect', 'connectSelected'].includes(task.info.algorithm)">
+ <tbody>
+ <tr
+ *ngIf="result && result.geneInteractionDataset !== undefined"
+ >
+ <td>Protein-Protein Interaction Dataset</td>
+ <td>
+ {{ result.geneInteractionDataset.name }}{{ result.geneInteractionDataset.licenced ? " (licensed)" : ""}}
+ [Version
+ {{ result.geneInteractionDataset.version }}]
+ </td>
+ </tr>
+ <tr
+ *ngIf="result && result.drugInteractionDataset !== undefined"
+ >
+ <td>Protein-Drug Interaction Dataset</td>
+ <td>
+ {{ result.drugInteractionDataset.name }}{{ result.drugInteractionDataset.licenced ? " (licensed)" : ""}}
+ [Version
+ {{ result.drugInteractionDataset.version }}]
+ </td>
+ </tr>
<tr *ngIf="task.info.parameters.resultSize !== undefined">
<td>Result Size</td>
<td>{{ task.info.parameters.resultSize }}</td>
@@ -255,9 +282,9 @@
<div
class="columns m-1"
*ngIf="
- ['quick', 'super', 'connect', 'connectSelected'].indexOf(
+ ['quick', 'super', 'connect', 'connectSelected'].includes(
task.info.algorithm
- ) > -1
+ ) && algorithmDefault != null
"
>
<div class="column">
@@ -267,29 +294,29 @@
title="algorithm"
></app-fa-solid-icon>
Algorithm:
- {{ algorithmNames["multisteiner"] }}
+ {{ algorithmNames[algorithmDefault['protein']['algorithm']] }}
</h4>
<table class="table parameter-table">
<tbody>
- <tr>
- <td>Number of Trees</td>
- <td>1</td>
- </tr>
- <tr>
- <td>Tolerance</td>
- <td>0</td>
- </tr>
- <tr>
- <td>Hub Penality</td>
- <td>1</td>
- </tr>
+ <tr>
+ <td>Number of Trees</td>
+ <td>{{algorithmDefault['protein']['numTrees']}}</td>
+ </tr>
+ <tr>
+ <td>Tolerance</td>
+ <td>{{algorithmDefault['protein']['tolerance']}}</td>
+ </tr>
+ <tr>
+ <td>Hub Penality</td>
+ <td>{{algorithmDefault['protein']['hubPenalty']}}</td>
+ </tr>
</tbody>
</table>
</div>
</div>
<div
class="columns m-1"
- *ngIf="['quick', 'super'].indexOf(task.info.algorithm) > -1"
+ *ngIf="['quick', 'super'].includes(task.info.algorithm) && algorithmDefault != null"
>
<div class="column">
<h4 class="is-4 has-text-weight-bold">
@@ -298,38 +325,48 @@
title="algorithm"
></app-fa-solid-icon>
Algorithm:
- {{ algorithmNames["closeness"] }}
+ {{ algorithmNames[algorithmDefault['drug']['algorithm']]}}
</h4>
<table class="table parameter-table">
<tbody>
- <tr>
- <td>Include indirect drugs</td>
- <td>
- <app-fa-solid-icon
- icon="times"
- classString="has-text-danger"
- title="indirect drugs excluded"
- ></app-fa-solid-icon>
- </td>
- </tr>
- <tr>
- <td>Include non-approved drugs</td>
- <td>
- <app-fa-solid-icon
- icon="check"
- title="non-approved drugs included"
- classString="has-text-success"
- ></app-fa-solid-icon>
- </td>
- </tr>
- <tr>
- <td>Hub Penality</td>
- <td>1</td>
- </tr>
- <tr>
- <td>Result Size</td>
- <td>10</td>
- </tr>
+ <tr>
+ <td>Include indirect drugs</td>
+ <td>
+ <app-fa-solid-icon *ngIf="!algorithmDefault['drug']['include_indirect_drugs']"
+ icon="times"
+ classString="has-text-danger"
+ title="indirect drugs excluded"
+ ></app-fa-solid-icon>
+ <app-fa-solid-icon *ngIf="algorithmDefault['drug']['include_indirect_drugs']"
+ icon="check"
+ title="indirect drugs included"
+ classString="has-text-success"
+ ></app-fa-solid-icon>
+ </td>
+ </tr>
+ <tr>
+ <td>Include non-approved drugs</td>
+ <td>
+ <app-fa-solid-icon *ngIf="!algorithmDefault['drug']['include_non_approved_drugs']"
+ icon="times"
+ classString="has-text-danger"
+ title="non-approved drugs excluded"
+ ></app-fa-solid-icon>
+ <app-fa-solid-icon *ngIf="algorithmDefault['drug']['include_non_approved_drugs']"
+ icon="check"
+ title="non-approved drugs included"
+ classString="has-text-success"
+ ></app-fa-solid-icon>
+ </td>
+ </tr>
+ <tr>
+ <td>Hub Penality</td>
+ <td>{{algorithmDefault['drug']['hubPenalty']}}</td>
+ </tr>
+ <tr>
+ <td>Result Size</td>
+ <td>{{algorithmDefault['drug']['resultSize']}}</td>
+ </tr>
</tbody>
</table>
</div>
diff --git a/src/app/components/analysis-panel/analysis-panel.component.scss b/src/app/components/analysis-panel/analysis-panel.component.scss
index da40983a429e5870b025c069f7c7b59f7ffcabed..640a0499d45c311f221132604171d4d2361bf4bd 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.scss
+++ b/src/app/components/analysis-panel/analysis-panel.component.scss
@@ -31,7 +31,7 @@
.parameter-table, .parameter-tab {
width: 100% !important;
overflow-y: scroll;
- height: 100%;
+ height: 80%;
}
.tab-content {
@@ -97,18 +97,27 @@ div.control.dropdown {
z-index: $menu-z-index !important;
}
-.inner-dropdown.dropdown-menu {
- margin-left: calc(150px - 15px);
- width: 150px;
- margin-top: -45px;
+.inner-dropdown {
+ padding-bottom: 0 !important;
- .dropdown-content {
- padding-left: 0.5rem;
- padding-right: 0.5rem;
+ .dropdown-menu {
+ margin-left: calc(150px - 15px);
+ width: 150px;
+ margin-top: -45px;
- .dropdown-item {
- padding: .375rem !important;
+ .dropdown-content {
+ padding-left: 0.5rem;
+ padding-right: 0.5rem;
+
+ .dropdown-item {
+ padding: .375rem !important;
+ }
}
}
+}
+.version-text {
+ font-size: .6rem !important;
+ padding-bottom: 0 !important;
}
+
diff --git a/src/app/components/analysis-panel/analysis-panel.component.ts b/src/app/components/analysis-panel/analysis-panel.component.ts
index f5fabf86897a5932f73b68fe9ea18ead88f5e984..5c261c65bb828cbe1fe8823e885250813f450e50 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.ts
+++ b/src/app/components/analysis-panel/analysis-panel.component.ts
@@ -31,12 +31,14 @@ import {DrugstoneConfigService} from 'src/app/services/drugstone-config/drugston
import {NetworkHandlerService} from 'src/app/services/network-handler/network-handler.service';
import {LegendService} from 'src/app/services/legend-service/legend-service.service';
import {LoadingScreenService} from 'src/app/services/loading-screen/loading-screen.service';
+import {version} from '../../../version';
declare var vis: any;
interface Scored {
score: number; // Normalized or unnormalized (whichever user selects, will be displayed in the table)
rawScore: number; // Unnormalized (kept to restore unnormalized value)
+ rank: number;
}
interface Seeded {
@@ -64,6 +66,8 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
public fullscreen = false;
+ public algorithmDefault = undefined;
+
public network: any;
public nodeData: { nodes: any, edges: any } = {nodes: null, edges: null};
// private drugNodes: any[] = [];
@@ -102,11 +106,17 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
public tableDrugScoreTooltip = '';
public tableProteinScoreTooltip = '';
+ public versionString = undefined;
+
public expressionMap: NodeAttributeMap;
public loading = false;
constructor(public legendService: LegendService, public networkHandler: NetworkHandlerService, public drugstoneConfig: DrugstoneConfigService, private http: HttpClient, public analysis: AnalysisService, public netex: NetexControllerService, public loadingScreen: LoadingScreenService) {
+ try {
+ this.versionString = version;
+ }catch (e){
+ }
}
async ngOnInit() {
@@ -120,6 +130,20 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
await this.refresh();
}
+ private rankTable(table: Array<Drug & Scored> | Array<Node & Scored & Seeded>) {
+ let lastRank = 1;
+ for (let idx = 0; idx < table.length; idx++) {
+ if (idx === 0) {
+ table[idx].rank = lastRank;
+ continue;
+ }
+ if (table[idx].score !== table[idx - 1].score) {
+ lastRank += 1;
+ }
+ table[idx].rank = lastRank;
+ }
+ }
+
private async refresh() {
if (this.token) {
this.loadingScreen.stateUpdate(true);
@@ -157,6 +181,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
}
if (this.task && this.task.info.done) {
+
this.loading = true;
this.netex.getTaskResult(this.token).then(async result => {
this.drugstoneConfig.set_analysisConfig(result.parameters.config);
@@ -215,6 +240,9 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
this.tableDrugs.forEach((r) => {
r.rawScore = r.score;
});
+ // @ts-ignore
+ this.tableDrugs.sort((a, b) => b.score - a.score);
+ this.rankTable(this.tableDrugs);
this.tableProteins = nodes.filter(e => e.drugstoneId && e.drugstoneType === 'protein');
this.tableSelectedProteins = [];
this.tableProteins.forEach((r) => {
@@ -225,7 +253,8 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
this.tableSelectedProteins.push(r);
}
});
-
+ this.tableProteins.sort((a, b) => b.score - a.score);
+ this.rankTable(this.tableProteins);
this.tableHasScores = ['trustrank', 'closeness', 'degree', 'betweenness', 'quick', 'super']
.indexOf(this.task.info.algorithm) !== -1;
@@ -350,7 +379,14 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
}
});
this.emitVisibleItems(true);
- });
+ }).then(() => {
+ if (!['quick', 'super', 'connect', 'connectSelected'].includes(this.task.info.algorithm)) {
+ return;
+ }
+ this.netex.getAlgorithmDefaults(this.task.info.algorithm).then(response => {
+ this.algorithmDefault = response
+ });
+ }).catch(console.error);
});
this.loadingScreen.stateUpdate(false);
});
diff --git a/src/app/components/analysis-panel/drug-table/drug-table.component.html b/src/app/components/analysis-panel/drug-table/drug-table.component.html
index 799e1e091af5dcff6352f9a9c04187848e98cbde..d0fbc67d240c9fd19b39c6fa213ffa633e4bda64 100644
--- a/src/app/components/analysis-panel/drug-table/drug-table.component.html
+++ b/src/app/components/analysis-panel/drug-table/drug-table.component.html
@@ -6,6 +6,10 @@
>
<ng-template pTemplate="header">
<tr>
+ <th *ngIf="tableHasScores" [pSortableColumn]="'rank'" class="rank-column">
+ Rank
+ <p-sortIcon [field]="'rank'"></p-sortIcon>
+ </th>
<th [pSortableColumn]="'drugId'">
ID
<p-sortIcon [field]="'drugId'"></p-sortIcon>
@@ -41,10 +45,12 @@
</span>
<p-sortIcon [field]="'score'"></p-sortIcon>
</th>
+
</tr>
</ng-template>
<ng-template pTemplate="body" let-e>
<tr>
+ <td *ngIf="tableHasScores" class="rank-column">{{ e.rank}}</td>
<td>
<a
href="https://www.drugbank.ca/drugs/{{ e.drugId }}"
@@ -99,7 +105,7 @@
></app-fa-solid-icon>
</span>
</td> -->
- <td *ngIf="tableHasScores">{{ e.score.toString() | number }}</td>
+ <td *ngIf="tableHasScores">{{ formatNumber(e.score.toString()) }}</td>
</tr>
</ng-template>
</p-table>
diff --git a/src/app/components/analysis-panel/drug-table/drug-table.component.scss b/src/app/components/analysis-panel/drug-table/drug-table.component.scss
index 735e5be65af6cc82dab26bed8ab25f36a9e2c661..34d0ea96bded7ad6e61812e64fc72443751e535b 100644
--- a/src/app/components/analysis-panel/drug-table/drug-table.component.scss
+++ b/src/app/components/analysis-panel/drug-table/drug-table.component.scss
@@ -34,3 +34,12 @@
height: 1.5rem;
width: 1.5rem;
}
+
+th.rank-column {
+ width: 75px;
+}
+
+td.rank-column {
+ text-align: right !important;
+ padding-right: 35px !important;
+}
diff --git a/src/app/components/analysis-panel/drug-table/drug-table.component.ts b/src/app/components/analysis-panel/drug-table/drug-table.component.ts
index e48a9a8511be10b5d54bd61ae0e28b2dec373b91..fbc2578e7cc7001283e1aa655f256fcd64249429 100644
--- a/src/app/components/analysis-panel/drug-table/drug-table.component.ts
+++ b/src/app/components/analysis-panel/drug-table/drug-table.component.ts
@@ -16,4 +16,15 @@ export class DrugTableComponent implements OnInit {
ngOnInit(): void {
}
+ formatNumber(input): string {
+ if (!input) {
+ return 'NA';
+ }
+ const n = Number(input);
+ if (n > 0.01) {
+ return n.toPrecision(3);
+ }
+ return n.toExponential(3).toString();
+ }
+
}
diff --git a/src/app/components/analysis-panel/prot-table/prot-table.component.html b/src/app/components/analysis-panel/prot-table/prot-table.component.html
index 7c117079f5a62c18abe1a99a8d82a1c3529642cf..480daaf02cb2108059f34db1b8b690dac8e97b5b 100644
--- a/src/app/components/analysis-panel/prot-table/prot-table.component.html
+++ b/src/app/components/analysis-panel/prot-table/prot-table.component.html
@@ -12,6 +12,10 @@
<th class="checkbox-col">
<p-tableHeaderCheckbox class="drgstn"></p-tableHeaderCheckbox>
</th>
+ <th *ngIf="tableHasScores" [pSortableColumn]="'rank'" class="rank-column">
+ Rank
+ <p-sortIcon [field]="'rank'"></p-sortIcon>
+ </th>
<th *ngIf="identifier === 'symbol'" [pSortableColumn]="'symbol'">
Symbol
<p-sortIcon [field]="'symbol'"></p-sortIcon>
@@ -58,6 +62,7 @@
<td>
<p-tableCheckbox [value]="e" class="drgstn"></p-tableCheckbox>
</td>
+ <td *ngIf="tableHasScores" class="rank-column">{{ e.rank}}</td>
<td *ngIf="identifier === 'symbol'">
<a
*ngFor="let symbol of e.symbol; index as i"
@@ -91,7 +96,7 @@
>
</td>
<td>{{ e.proteinName }}</td>
- <td *ngIf="tableHasScores">{{ e.score.toString() | number }}</td>
+ <td *ngIf="tableHasScores">{{ formatNumber(e.score)}}</td>
<td>
<span *ngIf="e.isSeed">
<app-fa-solid-icon
diff --git a/src/app/components/analysis-panel/prot-table/prot-table.component.scss b/src/app/components/analysis-panel/prot-table/prot-table.component.scss
index 3bfa61703924a8b96e9c6211bf948255390fab25..3ae563eb24d493a9dd857185c222ffaebc88de7d 100644
--- a/src/app/components/analysis-panel/prot-table/prot-table.component.scss
+++ b/src/app/components/analysis-panel/prot-table/prot-table.component.scss
@@ -37,7 +37,16 @@
td {
padding: 0.2rem 1rem 0.2rem 1rem !important;
- vertical-align:middle !important;
+ vertical-align: middle !important;
+}
+
+th.rank-column {
+ width: 75px;
+ }
+
+td.rank-column {
+ text-align: right !important;
+ padding-right: 35px !important;
}
diff --git a/src/app/components/analysis-panel/prot-table/prot-table.component.ts b/src/app/components/analysis-panel/prot-table/prot-table.component.ts
index 922b75d9a6dc88b58a37737d0fba757148575588..c6f29a86b7a9b93311fdd3db155021546b99704e 100644
--- a/src/app/components/analysis-panel/prot-table/prot-table.component.ts
+++ b/src/app/components/analysis-panel/prot-table/prot-table.component.ts
@@ -1,4 +1,5 @@
import {Component, Input, OnInit} from '@angular/core';
+
@Component({
selector: 'app-prot-table',
templateUrl: './prot-table.component.html',
@@ -7,15 +8,27 @@ import {Component, Input, OnInit} from '@angular/core';
export class ProtTableComponent implements OnInit {
@Input() public tableHasScores = true;
- @Input() public tableProteinScoreTooltip = "";
- @Input() public tableProteins = []
- @Input() public tableSelectedProteins
- @Input() public identifier = "symbol"
- @Input() public tableProteinSelection : (args: any) => void
+ @Input() public tableProteinScoreTooltip = '';
+ @Input() public tableProteins = [];
+ @Input() public tableSelectedProteins;
+ @Input() public identifier = 'symbol';
+ @Input() public tableProteinSelection: (args: any) => void;
- constructor() { }
+ constructor() {
+ }
ngOnInit(): void {
}
+ formatNumber(input): string {
+ if (!input) {
+ return 'NA';
+ }
+ const n = Number(input);
+ if (n > 0.01) {
+ return n.toPrecision(3);
+ }
+ return n.toExponential(3).toString();
+ }
+
}
diff --git a/src/app/components/network/network-legend/network-legend.component.html b/src/app/components/network/network-legend/network-legend.component.html
index 356cb1826846832cf03c2ce05cd98c519b7b08bc..fde2298ff2b12f20fd73e7662ab2852fdabfe639 100644
--- a/src/app/components/network/network-legend/network-legend.component.html
+++ b/src/app/components/network/network-legend/network-legend.component.html
@@ -5,8 +5,11 @@
>
<div class="legend-background" *ngIf="!config.legendUrl.length"></div>
<!-- default legend in html -->
+
<table *ngIf="!config.legendUrl.length" class="legend-table">
<ng-container *ngIf="config.showLegendNodes">
+ <td colspan="2" *ngIf="networkHandler.activeNetwork.nodeGroupsWithExpression.size >0"><i>Pie charts represent tissue normalized
+ median TPM, provided by GTEx</i></td>
<ng-container *ngFor="let nodeGroup of config.nodeGroups | keyvalue">
<tr
class="list-item"
@@ -21,7 +24,7 @@
>
</span>
</th>
- <td class="group-name"> {{ nodeGroup.value.groupName }} (exprs)</td>
+ <td class="group-name"> {{ nodeGroup.value.groupName }} (TPM)</td>
</ng-container>
<!-- normal legend without expression -->
@@ -29,7 +32,7 @@
<ng-container *ngIf="nodeGroup.value.image">
<!-- group icon given, use icon in legend -->
<th>
- <img [src]="nodeGroup.value.image" class="legend-icon" />
+ <img [src]="nodeGroup.value.image" class="legend-icon"/>
</th>
<td class="group-name"> {{ nodeGroup.value.groupName }}</td>
</ng-container>
@@ -110,7 +113,7 @@
</tr>
</ng-container>
</ng-container>
-
+
<ng-container *ngIf="config.showLegendEdges && !_emptyEdgeConfig">
<tr
*ngFor="let edgeGroup of config.edgeGroups | keyvalue"
diff --git a/src/app/components/network/network.component.html b/src/app/components/network/network.component.html
index ddd9d09b03578e407bf033cc960767d12ede2cec..247e8450f504eaa385e68a8ee1cc24173f13dbf1 100644
--- a/src/app/components/network/network.component.html
+++ b/src/app/components/network/network.component.html
@@ -51,6 +51,7 @@
<a class="dropdown-item" pTooltip="Opens Drugst.One website" [ngClass]="{ 'text-small': drugstoneConfig.smallStyle }" tooltipPosition="left"
[tooltipStyleClass]="'drgstn drgstn-tooltip drgstn-tooltip-left'" target="_blank"
href="https://drugst.one/home">About Drugst.One</a>
+ <b *ngIf="versionString" class="version-text dropdown-item">{{versionString}}</b>
</div>
</div>
</div>
diff --git a/src/app/components/network/network.component.scss b/src/app/components/network/network.component.scss
index 27d62b30dbabc9a04d00e27c8aab7f0b775a2adc..8a1d92232ac6dd45cebb691efdcfe5565706b2ba 100644
--- a/src/app/components/network/network.component.scss
+++ b/src/app/components/network/network.component.scss
@@ -27,18 +27,27 @@ div.control.dropdown {
z-index: $menu-z-index !important;
}
-.inner-dropdown.dropdown-menu {
- margin-left: calc(150px - 15px);
- width: 150px;
- margin-top: -45px;
+.inner-dropdown {
+ padding-bottom: 0 !important;
- .dropdown-content {
- padding-left: 0.5rem;
- padding-right: 0.5rem;
+ .dropdown-menu {
+ margin-left: calc(150px - 15px);
+ width: 150px;
+ margin-top: -45px;
- .dropdown-item {
- padding: .375rem !important;
+ .dropdown-content {
+ padding-left: 0.5rem;
+ padding-right: 0.5rem;
+
+ .dropdown-item {
+ padding: .375rem !important;
+ }
}
}
+}
+.version-text {
+ font-size: .6rem !important;
+ padding-bottom: 0 !important;
}
+
diff --git a/src/app/components/network/network.component.ts b/src/app/components/network/network.component.ts
index cb082e348bf8cc7cfe6702c8b902d930155f9aed..0ff031ad93a701a37cfcaa4283a5310ef9e1a1e5 100644
--- a/src/app/components/network/network.component.ts
+++ b/src/app/components/network/network.component.ts
@@ -22,8 +22,7 @@ import {pieChartContextRenderer} from 'src/app/utils';
import {NetworkHandlerService} from 'src/app/services/network-handler/network-handler.service';
import {LegendService} from 'src/app/services/legend-service/legend-service.service';
import {LoadingScreenService} from 'src/app/services/loading-screen/loading-screen.service';
-
-
+import {version} from '../../../version';
@Component({
selector: 'app-network',
templateUrl: './network.component.html',
@@ -85,6 +84,8 @@ export class NetworkComponent implements OnInit {
public loading = false;
+ public versionString = undefined;
+
public nodeGroupsWithExpression: Set<string> = new Set();
constructor(
@@ -92,9 +93,14 @@ export class NetworkComponent implements OnInit {
public networkHandler: NetworkHandlerService,
public analysis: AnalysisService,
public drugstoneConfig: DrugstoneConfigService,
+
public netex: NetexControllerService,
public omnipath: OmnipathControllerService,
public loadingScreen: LoadingScreenService) {
+ try {
+ this.versionString = version;
+ }catch (e){
+ }
}
ngOnInit(): void {
diff --git a/src/app/interfaces.ts b/src/app/interfaces.ts
index a6a621fd5a976292999d5d197a7ab6460b5fab7c..64f1b369e4773129bde62c82a8443af24989320b 100644
--- a/src/app/interfaces.ts
+++ b/src/app/interfaces.ts
@@ -234,6 +234,7 @@ export interface Drug {
trialLinks: string[];
drugstoneId: string;
group: string;
+
}
export interface Dataset {
diff --git a/src/app/services/netex-controller/netex-controller.service.ts b/src/app/services/netex-controller/netex-controller.service.ts
index 1b8f3a0f1d0eb5ae6216edbe4c275af4081966f3..230f850cf4b499beaf95c792091d69a612fe6617 100644
--- a/src/app/services/netex-controller/netex-controller.service.ts
+++ b/src/app/services/netex-controller/netex-controller.service.ts
@@ -4,7 +4,7 @@ import {HttpClient, HttpParams} from '@angular/common/http';
import {Observable} from 'rxjs';
import {Tissue, Node, EdgeType, QuickAlgorithmType, AlgorithmType} from 'src/app/interfaces';
import {InteractionDrugProteinDB, InteractionProteinProteinDB} from 'src/app/config';
-import { DrugstoneConfigService } from '../drugstone-config/drugstone-config.service';
+import {DrugstoneConfigService} from '../drugstone-config/drugstone-config.service';
@Injectable({
providedIn: 'root'
@@ -49,6 +49,10 @@ export class NetexControllerService {
return this.http.get<Tissue[]>(`${this.getBackend()}tissues/`);
}
+ public getAlgorithmDefaults(algorithm): Promise<any> {
+ return this.http.get(this.getBackend() + 'get_default_params?algorithm=' + algorithm).toPromise();
+ }
+
public digest_request(payload): Promise<any> {
return this.http.post('https://api.digest-validation.net/set', payload).toPromise();
}
@@ -68,7 +72,7 @@ export class NetexControllerService {
const payload = {
tissue: tissue.drugstoneId,
proteins: JSON.stringify(genesBackendIds)
- }
+ };
return this.http.post(`${this.getBackend()}tissue_expression/`, payload);
}
diff --git a/src/index.html b/src/index.html
index cccb94333f16d5d7708bf45e39ef88202888afc8..17d25973269d5d2de39db6244cb45db9fc518e28 100644
--- a/src/index.html
+++ b/src/index.html
@@ -113,10 +113,10 @@ menu<br>
<div style="max-width: 80vw; width: 1276px; height: 500px">
<drugst-one id="netexp1"
- config="{'activateNetworkMenuButtonAdjacentDisorders':false,'activateNetworkMenuButtonAdjacentDrugs':false, 'activateNetworkMenuButtonAdjacentDisordersDrugs': false, 'licensedDatasets':true}"
+ config='{"activateNetworkMenuButtonAdjacentDisorders":false,"activateNetworkMenuButtonAdjacentDrugs":false, "activateNetworkMenuButtonAdjacentDisordersDrugs": false, "licensedDatasets":true}'
groups='{"nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Important Gene","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Gene","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
- network='{"nodes":[{"id":"POSTN","group":"gene","label":"POSTN"},{"id":"FLNA","group":"gene","label":"FLNA"},{"id":"COL1A1","group":"gene","label":"COL1A1"},{"id":"IGFBP7","group":"gene","label":"IGFBP7"},{"id":"COL1A2","group":"gene","label":"COL1A2"},{"id":"TUBA1C","group":"gene","label":"TUBA1C"},{"id":"HTRA1","group":"gene","label":"HTRA1"},{"id":"GAPDH","group":"gene","label":"GAPDH"},{"id":"LGALS1","group":"gene","label":"LGALS1"},{"id":"FN1","group":"gene","label":"FN1"},{"id":"SERPINC1","group":"gene","label":"SERPINC1"},{"id":"HSPA1B","group":"gene","label":"HSPA1B"},{"id":"PGAM4","group":"gene","label":"PGAM4"},{"id":"COL12A1","group":"gene","label":"COL12A1"},{"id":"HNRNPK","group":"gene","label":"HNRNPK"},{"id":"ACTA2","group":"gene","label":"ACTA2"},{"id":"PGAM1","group":"gene","label":"PGAM1"},{"id":"ALDH2","group":"gene","label":"ALDH2"},{"id":"APOE","group":"gene","label":"APOE"},{"id":"HSPG2","group":"gene","label":"HSPG2"},{"id":"HSPA1A","group":"gene","label":"HSPA1A"},{"id":"PRDX2","group":"gene","label":"PRDX2"},{"id":"THBS2","group":"gene","label":"THBS2"},{"id":"PCOLCE","group":"gene","label":"PCOLCE"},{"id":"ANXA2","group":"gene","label":"ANXA2"},{"id":"FBN1","group":"gene","label":"FBN1"},{"id":"CCN2","group":"gene","label":"CCN2"},{"id":"CCN1","group":"gene","label":"CCN1"},{"id":"CEMIP","group":"gene","label":"CEMIP"},{"id":"MMP2","group":"gene","label":"MMP2"},{"id":"ANXA1","group":"gene","label":"ANXA1"}],"edges":[{"from":"DCTN4","to":"CFTR"},{"from":"STX1A","to":"SCNN1B","group":"default"},{"from":"SCNN1A","to":"SCNN1G","group":"default"},{"from":"SCNN1B","to":"SCNN1G","group":"default"}]}'
- ></drugst-one>
+ network='{"nodes":[{"id":"ATG16L1","group":"gene","label":"ATG16L1"},{"id":"IL10","group":"gene","label":"IL10"},{"id":"DEFA5","group":"gene","label":"DEFA5"},{"id":"INAVA","group":"gene","label":"INAVA"},{"id":"RASSF1","group":"gene","label":"RASSF1"},{"id":"PLCG2","group":"gene","label":"PLCG2"},{"id":"APC2","group":"gene","label":"APC2"},{"id":"ITGA4","group":"gene","label":"ITGA4"},{"id":"ICAM1","group":"gene","label":"ICAM1"},{"id":"CUL2","group":"gene","label":"CUL2"},{"id":"MUC19","group":"gene","label":"MUC19"},{"id":"CARD9","group":"gene","label":"CARD9"},{"id":"SLC11A1","group":"gene","label":"SLC11A1"},{"id":"PTPN22","group":"gene","label":"PTPN22"},{"id":"IL6","group":"gene","label":"IL6"},{"id":"NOD2","group":"gene","label":"NOD2"},{"id":"TNF","group":"gene","label":"TNF"},{"id":"SFRP1","group":"gene","label":"SFRP1"},{"id":"SLAMF8","group":"gene","label":"SLAMF8"},{"id":"ITGB8","group":"gene","label":"ITGB8"},{"id":"IL18RAP","group":"gene","label":"IL18RAP"},{"id":"PTGS2","group":"gene","label":"PTGS2"},{"id":"IRGM","group":"gene","label":"IRGM"},{"id":"ITGAL","group":"gene","label":"ITGAL"},{"id":"SFRP2","group":"gene","label":"SFRP2"},{"id":"TNFSF15","group":"gene","label":"TNFSF15"},{"id":"APC","group":"gene","label":"APC"},{"id":"IL23R","group":"gene","label":"IL23R"},{"id":"TGFB1","group":"gene","label":"TGFB1"},{"id":"VNN1","group":"gene","label":"VNN1"}],"edges":[{"from":"DCTN4","to":"CFTR"},{"from":"STX1A","to":"SCNN1B","group":"default"},{"from":"SCNN1A","to":"SCNN1G","group":"default"},{"from":"SCNN1B","to":"SCNN1G","group":"default"}]}'>
+ </drugst-one>
<!-- <drugst-one id="netexp1"-->
<!-- pluginId="2"-->
diff --git a/src/version.ts b/src/version.ts
new file mode 100644
index 0000000000000000000000000000000000000000..578cc21626d0aae39b6f96bf175a7897adb1d742
--- /dev/null
+++ b/src/version.ts
@@ -0,0 +1 @@
+export const version = 'v1.1.15-rc2';