From ef0186dc9a86bdf68758a67657317c644e8e249c Mon Sep 17 00:00:00 2001
From: AndiMajore <andi.majore@googlemail.com>
Date: Thu, 21 Jul 2022 20:52:00 +0200
Subject: [PATCH] fixed result_view for task results
---
.../analysis-panel.component.ts | 62 +++++++++-----
.../components/network/network.component.ts | 84 ++++++++++++-------
.../launch-analysis.component.ts | 6 +-
src/app/main-network.ts | 17 ++--
.../explorer-page/explorer-page.component.ts | 23 +++--
src/app/services/analysis/analysis.service.ts | 5 +-
.../netex-controller.service.ts | 40 ---------
src/index.html | 17 ++--
8 files changed, 139 insertions(+), 115 deletions(-)
diff --git a/src/app/components/analysis-panel/analysis-panel.component.ts b/src/app/components/analysis-panel/analysis-panel.component.ts
index fa726730..b8b551a5 100644
--- a/src/app/components/analysis-panel/analysis-panel.component.ts
+++ b/src/app/components/analysis-panel/analysis-panel.component.ts
@@ -31,10 +31,10 @@ import domtoimage from 'dom-to-image';
import {NetworkSettings} from '../../network-settings';
import {NetexControllerService} from 'src/app/services/netex-controller/netex-controller.service';
import {defaultConfig, IConfig} from 'src/app/config';
-import { mapCustomEdge, mapCustomNode } from 'src/app/main-network';
-import { downLoadFile, pieChartContextRenderer, removeDuplicateObjectsFromList } from 'src/app/utils';
-import { DrugstoneConfigService } from 'src/app/services/drugstone-config/drugstone-config.service';
-import { NetworkHandlerService } from 'src/app/services/network-handler/network-handler.service';
+import {mapCustomEdge, mapCustomNode} from 'src/app/main-network';
+import {downLoadFile, pieChartContextRenderer, removeDuplicateObjectsFromList} from 'src/app/utils';
+import {DrugstoneConfigService} from 'src/app/services/drugstone-config/drugstone-config.service';
+import {NetworkHandlerService} from 'src/app/services/network-handler/network-handler.service';
declare var vis: any;
@@ -62,6 +62,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
@ViewChild('networkWithLegend', {static: false}) networkWithLegendEl: ElementRef;
@Input() token: string | null = null;
+
@Input()
public set config(config: IConfig | undefined) {
if (typeof config === 'undefined') {
@@ -71,6 +72,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
this.myConfig[key] = config[key];
}
}
+
@Output() tokenChange = new EventEmitter<string | null>();
@Output() showDetailsChange = new EventEmitter<Wrapper>();
@Output() setInputNetwork = new EventEmitter<any>();
@@ -175,6 +177,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
if (this.task && this.task.info.done) {
this.result = await this.netex.getTaskResult(this.token);
+ console.log(this.result)
const nodeAttributes = this.result.nodeAttributes || {};
this.networkHandler.activeNetwork.seedMap = nodeAttributes.isSeed || {};
@@ -187,6 +190,8 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
// Create
const {nodes, edges} = this.createNetwork(this.result);
+ console.log(nodes)
+ console.log(edges)
this.setInputNetwork.emit({nodes: nodes, edges: edges});
this.nodeData.nodes = new vis.DataSet(nodes);
this.nodeData.edges = new vis.DataSet(edges);
@@ -197,12 +202,12 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
this.networkHandler.activeNetwork.networkInternal = new vis.Network(container, this.nodeData, options);
- this.tableDrugs = nodes.filter( e => e.drugstoneId && e.drugstoneId.drugstoneType === 'drug');
+ this.tableDrugs = nodes.filter(e => e.drugstoneId && e.drugstoneId.drugstoneType === 'drug');
this.tableDrugs.forEach((r) => {
r.rawScore = r.score;
});
- this.tableProteins = nodes.filter( e => e.drugstoneId && e.drugstoneType === 'protein');
+ this.tableProteins = nodes.filter(e => e.drugstoneId && e.drugstoneType === 'protein');
this.tableSelectedProteins = [];
this.tableProteins.forEach((r) => {
r.rawScore = r.score;
@@ -280,7 +285,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
isSeed,
selected,
gradient
- )
+ )
updatedNodes.push(nodeStyled);
}
this.nodeData.nodes.update(updatedNodes);
@@ -312,7 +317,7 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
isSeed,
selected,
gradient
- )
+ )
updatedNodes.push(nodeStyled);
});
this.nodeData.nodes.update(updatedNodes);
@@ -414,7 +419,6 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
// add drugGroup and foundNodesGroup for added nodes
// these groups can be overwritten by the user
const nodes = [];
- const edges = [];
const attributes = result.nodeAttributes || {};
@@ -422,21 +426,34 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
this.effects = [];
const network = result.network;
- const nodeTypes = attributes.nodeTypes || {};
- const isSeed = attributes.isSeed || {};
- const scores = attributes.scores || {};
+ // const nodeTypes = attributes.nodeTypes || {};
+ // const isSeed = attributes.isSeed || {};
+ // const scores = attributes.scores || {};
const details = attributes.details || {};
-
- for (const node of network.nodes) {
- // convert id to netex Id if exists
- const nodeDetails = details[node];
-
- nodeDetails.id = nodeDetails.id ? nodeDetails.id : (typeof nodeDetails.drugstoneId === 'string' ? nodeDetails.drugstoneId : nodeDetails.drugstoneId[0]);
+ const nodeIdMap = {}
+ // const reverseNodeIdMap = {}
+ // @ts-ignore
+ Object.entries(details).filter(e => e[1].drugstoneType === 'protein').forEach(e => {
+ // let id =
+ // @ts-ignore
+ e[1].drugstoneId.forEach(id=>{
+ nodeIdMap[id] = e[1][identifier][0]
+ })
+
+ // if (!nodeIdMap[id])
+ // nodeIdMap[id] = [e[0]]
+ // else
+ // nodeIdMap[id].push(e[0])
+ })
+ for (const nodeId of Object.keys(details)) {
+ const nodeDetails = details[nodeId]
+ nodeDetails.id = nodeDetails.id ? nodeDetails.id : (typeof nodeDetails.drugstoneId === 'string' ? nodeDetails.drugstoneId : nodeDetails.drugstoneId[0]);
if (nodeDetails.drugstoneId && nodeDetails.drugstoneType === 'protein') {
// node is protein from database, has been mapped on init to backend protein from backend
// or was found during analysis
nodeDetails.group = nodeDetails.group ? nodeDetails.group : 'foundNode';
nodeDetails.label = nodeDetails.label ? nodeDetails.label : nodeDetails[identifier];
+ nodeDetails.id = nodeDetails[identifier][0] ? nodeDetails[identifier][0] : nodeDetails.id;
this.proteins.push(nodeDetails);
} else if (nodeDetails.drugstoneId && nodeDetails.drugstoneType === 'drug') {
// node is drug, was found during analysis
@@ -451,9 +468,16 @@ export class AnalysisPanelComponent implements OnInit, OnChanges, AfterViewInit
// option to use scores[node] as gradient, but sccores are very small
nodes.push(NetworkSettings.getNodeStyle(nodeDetails as Node, config, false, false, 1))
}
+
+ const edges = [];
+
for (const edge of network.edges) {
- edges.push(mapCustomEdge(edge, this.myConfig));
+ const e = mapCustomEdge(edge, this.myConfig)
+ e.from = e.from[0] === 'p' ? nodeIdMap[e.from] : e.from
+ e.to = e.to[0] === 'p' ? nodeIdMap[e.to] : e.to
+ edges.push(e);
}
+ console.log(edges)
return {
nodes,
edges,
diff --git a/src/app/components/network/network.component.ts b/src/app/components/network/network.component.ts
index 66638f71..da03306c 100644
--- a/src/app/components/network/network.component.ts
+++ b/src/app/components/network/network.component.ts
@@ -118,20 +118,20 @@ export class NetworkComponent implements OnInit {
const addedEdge = {}
for (const interaction of response.edges) {
const edge = mapCustomEdge({from: interaction.protein, to: interaction.disorder}, this.drugstoneConfig.config)
-
- if (edge.from[0] === 'p')
- edge.from = proteinMap[edge.from]
- if (edge.to[0] === 'p')
- edge.to = proteinMap[edge.to]
- if (addedEdge[edge.to] && addedEdge[edge.to].indexOf(edge.from) !== -1)
- continue
- if (addedEdge[edge.from] && addedEdge[edge.from].indexOf(edge.to) !== -1)
- continue
- if (!addedEdge[edge.to])
- addedEdge[edge.to] = [edge.from]
- else
- addedEdge[edge.to].push(edge.from)
- this.adjacentProteinDisorderEdgesList.push(edge);
+ if (proteinMap[edge.from]) {
+ proteinMap[edge.from].forEach(from => {
+ if (addedEdge[from] && addedEdge[from].indexOf(edge.to) !== -1)
+ return
+ const e = JSON.parse(JSON.stringify(edge))
+ e.from = from
+ e.to = edge.to
+ this.adjacentProteinDisorderEdgesList.push(e);
+ if (!addedEdge[from])
+ addedEdge[from] = [edge.to]
+ else
+ addedEdge[from].push(edge.to)
+ })
+ }
}
for (const disorder of response.disorders) {
disorder.group = 'defaultDisorder';
@@ -186,7 +186,19 @@ export class NetworkComponent implements OnInit {
this.nodeData.nodes.get().forEach(n => {
if (n.drugstoneType === 'protein') {
n.drugstoneId.forEach(id => {
- proteinMap[id] = n.id;
+ if (typeof id === 'string') {
+ if (proteinMap[id])
+ proteinMap[id].push(n.id)
+ else
+ proteinMap[id] = [n.id];
+ } else {
+ n.id.forEach(single_id => {
+ if (proteinMap[single_id])
+ proteinMap[single_id].push(n.id)
+ else
+ proteinMap[single_id] = [n.id];
+ })
+ }
});
}
});
@@ -196,17 +208,27 @@ export class NetworkComponent implements OnInit {
public updateAdjacentDrugs(bool: boolean) {
this.adjacentDrugs = bool;
if (this.adjacentDrugs) {
+ const addedEdge = {}
const proteinMap = this.getProteinMap()
this.netex.adjacentDrugs(this.drugstoneConfig.config.interactionDrugProtein, this.drugstoneConfig.config.licencedDatasets, this.nodeData.nodes.get()).subscribe(response => {
const existingDrugIDs = this.nodeData.nodes.get().filter(n => n.drugstoneId && n.drugstoneType === 'drug').map(n => n.drugstoneId);
for (const interaction of response.pdis) {
- let edge = mapCustomEdge({from: interaction.protein, to: interaction.drug}, this.drugstoneConfig.config)
- if (edge.from[0] === 'p')
- edge.from = proteinMap[edge.from]
- if (edge.to[0] === 'p')
- edge.to = proteinMap[edge.to]
-
- this.adjacentDrugEdgesList.push(edge);
+ const edge = mapCustomEdge({from: interaction.protein, to: interaction.drug}, this.drugstoneConfig.config)
+
+ if (proteinMap[edge.from]) {
+ proteinMap[edge.from].forEach(from => {
+ if (addedEdge[from] && addedEdge[from].indexOf(edge.to) !== -1)
+ return
+ const e = JSON.parse(JSON.stringify(edge))
+ e.from = from
+ e.to = edge.to
+ this.adjacentDrugEdgesList.push(e);
+ if (!addedEdge[from])
+ addedEdge[from] = [edge.to]
+ else
+ addedEdge[from].push(edge.to)
+ })
+ }
}
for (const drug of response.drugs) {
drug.group = 'foundDrug';
@@ -349,22 +371,26 @@ export class NetworkComponent implements OnInit {
this.expressionMap = response;
const updatedNodes = [];
// mapping from netex IDs to network IDs, TODO check if this step is necessary
- const networkIdMappping = {}
+ const networkIdMapping = {}
this.nodeData.nodes.get().forEach(element => {
if (element.drugstoneType === 'protein') {
element.drugstoneId.forEach(id => {
- networkIdMappping[id] = element.id;
+ if (networkIdMapping[id])
+ networkIdMapping[id].push(element.id);
+ else
+ networkIdMapping[id] = [element.id]
});
}
});
const maxExpr = Math.max(...Object.values(this.expressionMap));
const exprMap = {}
for (const [drugstoneId, expressionlvl] of Object.entries(this.expressionMap)) {
- const networkId = networkIdMappping[drugstoneId]
- if (!exprMap[networkId])
- exprMap[networkId] = [expressionlvl]
- else
- exprMap[networkId].push(expressionlvl)
+ networkIdMapping[drugstoneId].forEach(networkId => {
+ if (!exprMap[networkId])
+ exprMap[networkId] = [expressionlvl]
+ else
+ exprMap[networkId].push(expressionlvl)
+ })
}
this.expressionMap = {}
Object.keys(exprMap).forEach(networkId => {
diff --git a/src/app/dialogs/launch-analysis/launch-analysis.component.ts b/src/app/dialogs/launch-analysis/launch-analysis.component.ts
index 6a735f05..7d1474f8 100644
--- a/src/app/dialogs/launch-analysis/launch-analysis.component.ts
+++ b/src/app/dialogs/launch-analysis/launch-analysis.component.ts
@@ -105,10 +105,8 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
public async startTask() {
// all nodes in selection have drugstoneId, hence exist in the backend
- const seeds = this.analysis.getSelection().map((item) => item.data.drugstoneId)
- const seedsFiltered = seeds.filter(function (el) {
- return el != null;
- });
+ const seeds = this.analysis.getSelection().map((item) => item.data.drugstoneId).flatMap(l => l)
+ const seedsFiltered = seeds.filter(el => el != null);
const parameters: any = {
seeds: seedsFiltered,
config: this.config,
diff --git a/src/app/main-network.ts b/src/app/main-network.ts
index 1917d22a..a403e4fe 100644
--- a/src/app/main-network.ts
+++ b/src/app/main-network.ts
@@ -126,9 +126,16 @@ export function mapCustomEdge(customEdge: NodeInteraction, config: IConfig): any
* @returns
*/
export function mapNetexEdge(customEdge: NetexInteraction, config: IConfig, node_map: object): any {
- const edge = JSON.parse(JSON.stringify(config.edgeGroups.default));
- edge['from'] = node_map[customEdge['proteinA']];
- edge['to'] = node_map[customEdge['proteinB']];
- edge['dataset'] = customEdge['dataset'];
- return edge;
+ const edges = []
+ node_map[customEdge['proteinA']].forEach(from => {
+ node_map[customEdge['proteinB']].forEach(to => {
+ const edge = JSON.parse(JSON.stringify(config.edgeGroups.default));
+ edge['from'] = from;
+ edge['to'] = to;
+ edge['dataset'] = customEdge['dataset'];
+ edges.push(edge)
+ })
+ })
+
+ return edges;
}
diff --git a/src/app/pages/explorer-page/explorer-page.component.ts b/src/app/pages/explorer-page/explorer-page.component.ts
index f3ea4ff9..2b52f4c1 100644
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -256,16 +256,23 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
let {nodes, edges} = this.proteinData.mapDataToNetworkInput(this.drugstoneConfig.config);
if (this.drugstoneConfig.config.autofillEdges && nodes.length) {
let node_map = {};
- nodes.filter(n => n[this.drugstoneConfig.config.identifier]).forEach(node => {
- if (typeof node.drugstoneId === 'string')
- node_map[node.drugstoneId] = node.id;
- else
+ nodes.filter(n => n.drugstoneType === 'protein').forEach(node => {
+ if (typeof node.drugstoneId === 'string') {
+ if (node_map[node.drugstoneId])
+ node_map[node.drugstoneId].push(node.id);
+ else
+ node_map[node.drugstoneId] = [node.id];
+ } else {
node.drugstoneId.forEach(n => {
- node_map[n] = node.id;
+ if (node_map[n])
+ node_map[n].push(node.id);
+ else
+ node_map[n] = [node.id];
})
+ }
})
const netexEdges = await this.netex.fetchEdges(nodes, this.drugstoneConfig.config.interactionProteinProtein, this.drugstoneConfig.config.licencedDatasets);
- edges.push(...netexEdges.map(netexEdge => mapNetexEdge(netexEdge, this.drugstoneConfig.config, node_map)));
+ edges.push(...netexEdges.map(netexEdge => mapNetexEdge(netexEdge, this.drugstoneConfig.config, node_map)).flatMap(e => e));
}
const edge_map = {}
@@ -273,9 +280,9 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
edges = edges.filter(edge => {
if (edge_map[edge.to] && edge_map[edge.to].indexOf(edge.from) !== -1)
return false
- if (edge_map[edge.from] && edge_map[edge.from].indexOf(edge.to) !==-1)
+ if (edge_map[edge.from] && edge_map[edge.from].indexOf(edge.to) !== -1)
return false
- if(!edge_map[edge.from])
+ if (!edge_map[edge.from])
edge_map[edge.from] = [edge.to]
else
edge_map[edge.from].push(edge.to)
diff --git a/src/app/services/analysis/analysis.service.ts b/src/app/services/analysis/analysis.service.ts
index 8bd2fc31..14c7938e 100644
--- a/src/app/services/analysis/analysis.service.ts
+++ b/src/app/services/analysis/analysis.service.ts
@@ -67,6 +67,8 @@ export class AnalysisService {
private launchingQuick = false;
+ private initialTasksLoaded = false
+
private tissues: Tissue[] = [];
constructor(private http: HttpClient, public netex: NetexControllerService) {
@@ -312,7 +314,8 @@ export class AnalysisService {
const watch = async () => {
const finished = JSON.parse(localStorage.getItem(this.tokensFinishedCookieKey));
const unfinished = this.tokens.filter(t => finished.indexOf(t) === -1);
- if (unfinished.length > 0) {
+ if (unfinished.length > 0 || ! this.initialTasksLoaded) {
+ this.initialTasksLoaded = true;
const newtasks = await this.getTasks();
if (newtasks.length === 0)
return;
diff --git a/src/app/services/netex-controller/netex-controller.service.ts b/src/app/services/netex-controller/netex-controller.service.ts
index ffaae7af..75682490 100644
--- a/src/app/services/netex-controller/netex-controller.service.ts
+++ b/src/app/services/netex-controller/netex-controller.service.ts
@@ -14,13 +14,6 @@ export class NetexControllerService {
constructor(private http: HttpClient) {
}
- // public async getTask(token): Promise<any> {
- // /**
- // * returns promise of task status
- // */
- // return this.http.get(`${environment.backend}task/?tokens=${token}`).toPromise();
- // }
-
public async getTasks(tokens): Promise<any> {
/**
* returns promise of tasks status
@@ -35,39 +28,6 @@ export class NetexControllerService {
return this.http.get<any>(`${environment.backend}task_result/?token=${token}`).toPromise();
}
- // public async getTaskResultDrug(token): Promise<any> {
- // /**
- // * returns promise of drug view of task result of COMPLETED task
- // */
- // return this.http.get<any>(`${environment.backend}task_result/?token=${token}&view=drugs`).toPromise();
- // }
-
- // public async getTaskResultGene(token): Promise<any> {
- // /**
- // * returns promise of gene view of task result of COMPLETED task
- // */
- // return this.http.get<any>(`${environment.backend}task_result/?token=${token}&view=genes`).toPromise();
- // }
-
- // public async getTaskResultCancerNode(token): Promise<any> {
- // /**
- // * returns promise of cancer driver gene view of task result of COMPLETED task
- // */
- // return this.http.get<any>(`${environment.backend}task_result/?token=${token}&view=cancer_driver_genes`).toPromise();
- // }
-
- // public async postTask(algorithm: QuickAlgorithmType | AlgorithmType, target, parameters,) {
- // /**
- // * sends a task to task service
- // */
- //
- // return this.http.post<any>(`${environment.backend}task/`, {
- // algorithm,
- // target,
- // parameters,
- // }).toPromise();
- // }
-
public async mapNodes(nodes, identifier): Promise<any> {
/**
* Tries to map every node to a node object in out database
diff --git a/src/index.html b/src/index.html
index 07791506..28222a51 100644
--- a/src/index.html
+++ b/src/index.html
@@ -92,17 +92,16 @@
<drugst-one id="netexp1"
pluginId="2"
- config='{"licencedDatasets": false, "interactionDrugProtein":"NeDRex", "physicsOn":true, "showLeftSidebar": true, "showSimpleAnalysis":true, "nodeGroups":{"patient":{"type":"patient","color":"black","font":{"color":"#ffffff"},"groupName":"Patient","shape":"image","image":"https://static.thenounproject.com/png/22780-200.png"},"condition":{"type":"condition","color":"black","font":{"color":"black"},"groupName":"Condition","shape":"text"},"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Important Gene","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#ffffff"},"groupName":"Gene","shape":"circle"},"foundDrug":{"type":"drug","color":{"border":"#F12590","background":"#F12590"},"font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"genotype":{"color":"black","groupName":"Relevant Gene"},"has-condition":{"color":"#ffffff","groupName":"Has Condition","dashes":[2,2]},"default":{"color":"#000000","groupName":"default edge"},"ggi":{"color":"#000000","groupName":"Interaction","dashes":[3,2]}},"identifier":"symbol","title":"Breast cancer example network","nodeShadow":true,"edgeShadow":false,"autofillEdges":true,"showLegend":true}'
- network='{"nodes":[{"id":"patient-1","group":"patient","x":592,"y":446},{"id":"patient-2","group":"patient","x":235,"y":87},{"id":"patient-3","group":"patient","x":105,"y":369},{"id":"ATM","label":"ATM","group":"gene","x":289,"y":242},{"id":"BARD1","label":"BARD1","group":"gene","x":44,"y":250},{"id":"BRCA1","label":"BRCA1","group":"gene","x":466,"y":576},{"id":"BRCA2","label":"BRCA2","group":"gene","x":507,"y":285},{"id":"BRIP1","label":"BRIP1","group":"gene","x":54,"y":474},{"id":"CHEK2","label":"CHEK2","group":"gene","x":216,"y":590},{"id":"CDH1","label":"CDH1","group":"gene","x":320,"y":-57},{"id":"NF1","label":"NF1","group":"gene","x":481,"y":111},{"id":"NBN","label":"NBN","group":"gene","x":-57,"y":314},{"id":"PALB2","label":"PALB2","group":"gene","x":450,"y":190},{"id":"PTEN","label":"PTEN","group":"important","x":305,"y":494},{"id":"RAD51C","label":"RAD51C","group":"gene","x":182,"y":-90},{"id":"RAD51D","label":"RAD51D","group":"gene","x":368,"y":73},{"id":"STK11","label":"STK11","group":"gene","x":686,"y":330},{"id":"TP53","label":"TP53","group":"important","x":333,"y":316},{"id":"subtype-1","label":"Subtype 1","group":"condition","x":556,"y":171},{"id":"subtype-2","label":"Subtype 2","group":"condition","x":-87,"y":221}],"edges":[{"from":"patient-1","to":"BRCA1","group":"genotype"},{"from":"patient-1","to":"TP53","group":"genotype"},{"from":"patient-1","to":"BRCA2","group":"genotype"},{"from":"patient-1","to":"PTEN","group":"genotype"},{"from":"patient-2","to":"TP53","group":"genotype"},{"from":"patient-2","to":"NF1","group":"genotype"},{"from":"patient-2","to":"BARD1","group":"genotype"},{"from":"patient-3","to":"TP53","group":"genotype"},{"from":"patient-3","to":"PTEN","group":"genotype"},{"from":"patient-3","to":"NBN","group":"genotype"},{"from":"patient-1","to":"subtype-1","group":"has-condition"},{"from":"patient-2","to":"subtype-1","group":"has-condition"},{"from":"patient-3","to":"subtype-2","group":"has-condition"}]}'>
+ config='{"identifier":"symbol","licencedDatasets": false, "interactionDrugProtein":"NeDRex", "physicsOn":true, "showLeftSidebar": true, "showSimpleAnalysis":true, "nodeGroups":{"patient":{"type":"patient","color":"black","font":{"color":"#ffffff"},"groupName":"Patient","shape":"image","image":"https://static.thenounproject.com/png/22780-200.png"},"condition":{"type":"condition","color":"black","font":{"color":"black"},"groupName":"Condition","shape":"text"},"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Important Gene","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#ffffff"},"groupName":"Gene","shape":"circle"},"foundDrug":{"type":"drug","color":{"border":"#F12590","background":"#F12590"},"font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"genotype":{"color":"black","groupName":"Relevant Gene"},"has-condition":{"color":"#ffffff","groupName":"Has Condition","dashes":[2,2]},"default":{"color":"#000000","groupName":"default edge"},"ggi":{"color":"#000000","groupName":"Interaction","dashes":[3,2]}},"title":"Breast cancer example network","nodeShadow":true,"edgeShadow":false,"autofillEdges":true,"showLegend":true}'
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GitLab