The network menu consists of all options that are directly related to the
network. It allows you to modify the network, add and remove node types and
highlight genes based on expression. The complete network information can be
exported from here e.g. as an image or a json.
- Reset View: Reset the network zoom and center the network.
-
Screenshot: Exports the network as an image. If the legend is generated by
Drugst.One, it will be included in the image. If the legend is loaded via an
url, it is currently not possible to include it into the screenshot. Also
please note that the screenshot function will work if the network nodes have
images due to security reasons.
-
Download: Download the network data as .graphml, .json or .csv format.
-
Tissue: Visualize the expression information for genes in the network based
on GTEx Tissue
expression values.
- Drugs: Display first neighbor drugs for the genes in the network.
-
Disorders (Protein): Display first neighbor disorders for the genes in the
network.
-
Disorders (Drug): Display first neighbor drugs for the disorders in the
network.
- Animation: Toggle the network physic (on/off).
In the analysis mode, the network menu has additionally the functions to
highlight seed genes used for the analysis as well as the connectors.
-
Seeds: Highlight the seeds used for the analysis in the network. This will
apply the "seedNode" group style to the seed nodes.
-
Connectors: Highlight the connectors in the network. Connectors are genes
that are included by the analysis because the are connecting the seed node
to a drug or a gene found by the algorithm. This will apply the
"connectorNode" style to th connectors.