diff --git a/DESCRIPTION b/DESCRIPTION
index 6e2da7c71262178f99420c2c770505b5a73104b1..91808e713465fdf7cc36adee3846e2da781ef527 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -42,7 +42,7 @@ Suggests: knitr, testthat, usethis, rmarkdown
VignetteBuilder: knitr
SystemRequirements: Tested with at least 4 GB RAM.
NeedsCompilation: no
-Packaged: 2023-05-03 09:11:34 UTC; helge
+Packaged: 2023-05-04 08:24:48 UTC; helge
Author: Helge Jentsch [aut, cre],
Maria Bobrowski [aut],
Johannes Weidinger [aut],
diff --git a/NAMESPACE b/NAMESPACE
index e848dc2319e7f4906338beca32d9c5a921cf6cf9..6753522662b39ada7c5efa2c2581bacb8bab2bab 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -35,4 +35,5 @@ importFrom(utils,sessionInfo)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,unzip)
+importFrom(utils,write.table)
importFrom(utils,zip)
diff --git a/R/Chelsa_new_download_functions.R b/R/Chelsa_new_download_functions.R
index 3d0675ce111d939b9df7d2c32a26ecdd1c0f29ee..8ec635c3ff0a80b92b7e705aec31d88b2970144b 100644
--- a/R/Chelsa_new_download_functions.R
+++ b/R/Chelsa_new_download_functions.R
@@ -19,10 +19,10 @@
#'@return CHELSA climate datasets for the period of 1979 - 2013
#'
#'@note Please note that the downloaded data for temperature and the therefore also the first eleven bioclim-variables are processed to °C with one significant decimal without offset and factor. Processing and conversion to other file-formats on a global dataset may take some time.
-#'@note Citations not yet updated.Please check Chelsa Website for current citation!
#'
-#'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. "Climatologies at high resolution for the earth's land surface areas". In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
+#'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth's land surface areas_. In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
#'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Data from: Climatologies at high resolution for the earth's land surface areas_. En. 2018. DOI: 10.5061/DRYAD.KD1D4. <URL: http://datadryad.org/stash/dataset/doi:10.5061/dryad.kd1d4>.
+#'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth’s land surface areas_ EnviDat. (2021) DOI: 10.16904/envidat.228. <URL: https://www.doi.org/10.16904/envidat.228>.
#'
#'@examples
#' \dontrun{
@@ -36,7 +36,7 @@
#'@import RCurl
#'@import ncdf4
#'@import terra
-#'@importFrom utils unzip download.file txtProgressBar
+#'@importFrom utils unzip download.file txtProgressBar write.table
#'
#'
#'@export
@@ -195,7 +195,7 @@ Chelsa.Clim.download <- function(save.location = "./",
}
write.table(x = dataDF,
- file = normalizePath(paste0(save.location, "/", call.time, "_dataDF.csv"), winslash = "/"),
+ file = normalizePath(paste0(save.location, "/", call.time, "_downloadDataframe.csv"), winslash = "/"),
sep = ";",
dec = ".",
row.names = F,
@@ -495,7 +495,6 @@ Chelsa.Clim.download <- function(save.location = "./",
#'
#'@note Specifications: <URL: https://chelsa-climate.org/wp-admin/download-page/CHELSA_tech_specification_V2.pdf>
#'@note More information on Shared Socioeconomic Pathways under <URL: https://www.dkrz.de/en/communication/climate-simulations/cmip6-en/the-ssp-scenarios?set_language=en>
-#'@note Citations not yet updated.Please check Chelsa Website for current citation!
#'
#'@examples
#' \dontrun{
diff --git a/R/auxiliary.R b/R/auxiliary.R
index 262f69bd0b4492ea976b537bc50fd0c07bdc7ed6..2ffa22a1172c982cf6606367a5fd7d2822fcb8e4 100644
--- a/R/auxiliary.R
+++ b/R/auxiliary.R
@@ -385,24 +385,50 @@ save.citation <- function(save.location = "./",
# citation_ <- RefManageR::ReadCrossRef("")
citation_paper <- RefManageR::ReadCrossRef("10.1038/sdata.2017.122")
+
citation_CHELSA_cmip5_ts <- RefManageR::ReadCrossRef("10.1038/s41597-020-00587-y")
citation_PBCOR <- RefManageR::ReadCrossRef("10.1175/JCLI-D-19-0332.1")
+ # citation_envidat.332 <- RefManageR::ReadCrossRef("10.16904/envidat.332") #doi.org/10.16904/envidat.332
+ utils::download.file("https://www.envidat.ch/dataset/bioclim_plus/export/bibtex.bib",
+ destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
+ citation_envidat.332 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
+ unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+
+ # citation_envidat.228.v2.1 <- RefManageR::ReadCrossRef("10.16904/envidat.228.v2.1") # doi.org/10.16904/envidat.228.v2.1
+ utils::download.file("https://www.envidat.ch/dataset/chelsa-climatologies/export/bibtex.bib",
+ destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
+ citation_envidat.228.v2.1 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
+ unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+
+ # citation_essd2022212 <- RefManageR::ReadCrossRef("10.5194/essd-2022-212") #doi.org/10.5194/essd-2022-212
+ utils::download.file("https://essd.copernicus.org/articles/14/5573/2022/essd-14-5573-2022.bib",
+ destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
+ citation_essd2022212 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
+ unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+
+
+ citation_sdata.2017.122 <- RefManageR::ReadCrossRef("10.1038/sdata.2017.122") # 10.1038/sdata.2017.122
# Data
citation_data <- RefManageR::ReadCrossRef("10.5061/dryad.kd1d4")
+
utils::download.file("https://www.envidat.ch/dataset/eur11/export/bibtex.bib",
destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
citation_EUR11 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+
utils::download.file("https://www.envidat.ch/dataset/chelsacruts/export/bibtex.bib",
destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
citation_CHELSAcruts_data <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+
utils::download.file("https://www.envidat.ch/dataset/chelsa_cmip5_ts/export/bibtex.bib",
destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
citation_CHELSA_cmip5_ts_data <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+
+
# Old versions
citation_Version1.0 <- RefManageR::ReadCrossRef("10.1594/WDCC/CHELSA_v1")
citation_Version1.1 <- RefManageR::ReadCrossRef("10.1594/WDCC/CHELSA_v1_1")
diff --git a/man/Chelsa.CMIP_6.download.Rd b/man/Chelsa.CMIP_6.download.Rd
index c662fd228e58e34fa8bd34eb5704da72b22df6ed..8c82a57adc1eb822b6477f40f4d38d55b7d15590 100644
--- a/man/Chelsa.CMIP_6.download.Rd
+++ b/man/Chelsa.CMIP_6.download.Rd
@@ -72,8 +72,6 @@ Please note that the downloaded data for temperature and the therefore also the
Specifications: <URL: https://chelsa-climate.org/wp-admin/download-page/CHELSA_tech_specification_V2.pdf>
More information on Shared Socioeconomic Pathways under <URL: https://www.dkrz.de/en/communication/climate-simulations/cmip6-en/the-ssp-scenarios?set_language=en>
-
-Citations not yet updated.Please check Chelsa Website for current citation!
}
\examples{
\dontrun{
diff --git a/man/Chelsa.Clim.download.Rd b/man/Chelsa.Clim.download.Rd
index a4ba783c1d5bdce0c3a84a44f9c5d0f5793b57f6..f7345862ed3052137204cd5f14a9623be0dc3137 100644
--- a/man/Chelsa.Clim.download.Rd
+++ b/man/Chelsa.Clim.download.Rd
@@ -58,8 +58,6 @@ This function supports the download, pre-processing and management of CHELSA cli
}
\note{
Please note that the downloaded data for temperature and the therefore also the first eleven bioclim-variables are processed to °C with one significant decimal without offset and factor. Processing and conversion to other file-formats on a global dataset may take some time.
-
-Citations not yet updated.Please check Chelsa Website for current citation!
}
\examples{
\dontrun{
@@ -71,9 +69,11 @@ Chelsa.Clim.download(parameter = "prec", month.var = c(1,12))
}
\references{
-D. N. Karger, O. Conrad, J. B{\"o}hner , et al. "Climatologies at high resolution for the earth's land surface areas". In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
+D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth's land surface areas_. In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Data from: Climatologies at high resolution for the earth's land surface areas_. En. 2018. DOI: 10.5061/DRYAD.KD1D4. <URL: http://datadryad.org/stash/dataset/doi:10.5061/dryad.kd1d4>.
+
+D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth’s land surface areas_ EnviDat. (2021) DOI: 10.16904/envidat.228. <URL: https://www.doi.org/10.16904/envidat.228>.
}
\author{
Helge Jentsch