diff --git a/sdd400_maxwell_integrate_with_subdirs.sh b/sdd400_maxwell_integrate_with_subdirs.sh new file mode 100644 index 0000000000000000000000000000000000000000..cf99c4c9614aeaa63ca43fb00e82c49d18b22f87 --- /dev/null +++ b/sdd400_maxwell_integrate_with_subdirs.sh @@ -0,0 +1,25 @@ +#!/bin/bash +#SBATCH --partition=allcpu #Partition to work on (select Cluster) +#SBATCH --time=24:00:00 #Maximum time of computation now set at 24 h +#SBATCH --nodes=1 #For multiple nodes you need a script that runs as MPI +#SBATCH --job-name=integration_test #Name of the job to find it in queue or in +#SBATCH --mail-type=END,FAIL #Send an email when finished or failed +#SBATCH --mail-user=lian.belgardt@physnet.uni-hamburg.de #Send to email adress + +#use underscores here or you will have problems +NPROCS=$(nproc) +path_raw_data="/asap3/petra3/gpfs/p21.1/2024/data/11018943/raw/pe/" #directory to be integrated +fpath_poni="/asap3/petra3/gpfs/p21.1/2024/data/11018943/processed/_People/Tjark/Poni/SDD_400mm.poni" +fpath_mask="/asap3/petra3/gpfs/p21.1/2024/data/11018943/processed/_People/Tjark/Mask/SDD_400mm.edf" +path_integrated_data="/asap3/petra3/gpfs/p21.1/2024/data/11018943/processed/_People/Tjark/postprocessing/SDD400/" #directory to save integrated data + +plarization=0.99 +number_of_points=3000 +unit="q_A^-1" + + +module load maxwell +module load conda/3.11 +activate XrayDiff +cd /asap3/petra3/gpfs/p21.1/2024/data/11018943/processed/_People/Tjark/ +python3 maxwell_integrate_with_subdirs.py $path_raw_data $path_integrated_data $fpath_poni $fpath_mask $NPROCS $plarization $number_of_points $unit #Start python script