adjusted Makefile for flash2d to compile smoothly on thunder

amatos2d/3rdparty/LAPACK95/lapack95_modules/README

 This directory contains module files necessary for the LAPACK95 interface library
+

flash2d/compile/linux_g64/Makefile

@@ -31,26 +31,26 @@ NO_MPSLM := yes
 
 # SET MAIN DIRECTORY PATH
 # !! This has to be alterd by user !!
-ROOTDIR = $(HOME)/Development
+ROOTDIR = $(HOME)/Transport-20/tracertransportsoftware
 
 # SET atlas/blas DIRECTORY PATH
 # !! This has to be alterd by user !!
-BLASDIR = 
-BLASLIB = -L/usr/lib -l:libblas.so.3gf
+BLASDIR = /usr/lib
+BLASLIB = -lblas
 
 # SET LAPACK DIRECTORY PATH/BLAS INCLUDED IN INTEL MKL
 # !! This has to be alterd by user !!
-LAPACKDIR = 
-LAPACKLIB = -L/usr/lib -l:liblapack.so.3gf -lpthread -lc 
+LAPACKDIR = /usr/lib
+LAPACKLIB = -llapack -lpthread -lc # -L$(ROOTDIR)/amatos2d/3rdpparty/LAPACK95 -llapack95
 # SET C++ DIRECTORY PATH
 # !! This has to be alterd by user !!
 CCLIBDIR = /usr/lib/
 CCLIB = # -lstdc++
 
 # SET MORE DIRECTORY PATHS
-LIBDIR  = $(ROOTDIR)/amatos2d/lib/$(MACHINE)
-INCDIR  = $(ROOTDIR)/amatos2d/include/$(MACHINE)
-MODDIR  = $(ROOTDIR)/amatos2d/include/$(MACHINE)
+LIBDIR  = $(ROOTDIR)/lib/$(MACHINE)
+INCDIR  = $(ROOTDIR)/include/$(MACHINE)
+MODDIR  = $(ROOTDIR)/include/$(MACHINE)
 MAINDIR = $(ROOTDIR)/flash2d
 
 SRCDIR  = $(MAINDIR)/src/flash
@@ -64,8 +64,11 @@ BUILDIR = $(MAINDIR)/compile/$(MACHINE)
 LIBNETCDF = 
 INCNETCDF =
 ifneq ($(strip $(NO_NETCDF)), yes)
-LIBNETCDF = -L$(LIBDIR) -lncugrid -L/usr/lib -lnetcdff -lnetcdf
-INCNETCDF = -I/usr/include
+LIBNETCDF = -L/sw/jessie-x64/netcdf_fortran-4.4.2-static-gcc81/lib -lnetcdff \
+              -L/sw/jessie-x64/szip-2.1-static-gccsys/lib -L/sw/jessie-x64/hdf5-1.8.16-static-gccsys/lib \
+              -L/sw/jessie-x64/netcdf-4.3.3.1-static-gccsys/lib -lnetcdf \
+              -lhdf5_hl -lhdf5 -lsz -lz -lm -ldl 
+INCNETCDF = -I/sw/jessie-x64/netcdf_fortran-4.4.2-static-gcc81/include/
 endif
 
 # SET VISNET DIRECTORY PATH
@@ -122,9 +125,8 @@ FFLAGS += -DNO_NETCDF
 endif
 
 # -------- next flag for using dummy graphics library -----------#
-LIBS = -L$(LIBDIR) -lamatos -L$(BLASDIR) $(BLASLIB) \
+LIBS = -L$(LIBDIR) -lamatos -lncugrid -L$(BLASDIR) $(BLASLIB) \
 	           -L$(LAPACKDIR) $(LAPACKLIB) \
-		   -L$(VISNETDIR) $(VISNETLIB) \
 		   $(LIBNETCDF) -L$(CCLIBDIR) $(CCLIB)\
         	   -lm