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explorer-page.component.html 8.00 KiB
<app-protein-analysis [(show)]="showAnalysisDialog"></app-protein-analysis>
<div class="covex explorer">
<div class="covex left-window">
<div>
<div class="covex bar-left">
<div class="card bar-small">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-database" aria-hidden="true"></i>
</span> Choose Dataset
</p>
</header>
<div class="card-content">
<app-select-dataset [datasetItems]="datasetItems"
(selectDataset)="createNetwork($event)"></app-select-dataset>
</div>
</div>
<div class="card bar-medium">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-info" aria-hidden="true"></i>
</span> Network Overview
</p>
</header>
<div class="card-content">
<nav class="level" *ngIf="proteinData">
<div class="level-item has-text-centered">
<div>
<p class="heading">Viral<br>Proteins</p>
<p class="title"> {{ proteinData.effects.length }}</p>
</div>
</div>
<div class="level-item has-text-centered">
<div>
<p class="heading">Host<br>Proteins</p>
<p class="title">{{ proteinData.proteins.length }}</p>
</div>
</div>
<div class="level-item has-text-centered">
<div>
<p class="heading">Virus-Host<br>Interactions</p>
<p class="title">{{ proteinData.edges.length }}</p>
</div>
</div>
</nav>
</div>
</div>
<div class="card bar-small">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-search" aria-hidden="true"></i>
</span> Query Protein
</p>
</header>
<div class="card-content">
<div class="field">
<div class="control">
<app-query-component [queryItems]="queryItems"
(selectItem)="queryAction($event)"></app-query-component>
</div>
</div>
</div> </div>
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-filter" aria-hidden="true"></i>
</span> Filter Viral Proteins
</p>
</header>
<div class="card-content overflow">
<div *ngFor="let bait of viralProteinCheckboxes">
<label class="checkbox">
<input type="checkbox" class="checkbox" [ngModel]="bait.checked"
(ngModelChange)="bait.checked = $event; filterNodes()">
{{ bait.data.effectName }}
</label>
</div>
</div>
<footer class="card-footer">
<button (click)="reset($event);" class="card-footer-item button is-danger">
Reset
</button>
</footer>
</div>
</div>
<div class="covex network">
<div class="card network">
<header class="card-header">
<p class="card-header-title">
Protein-Protein Interaction Network
</p>
</header>
<div class="card-content">
<div class="card-image" id="0">
<div class="network center" #network>
<button class="button is-loading center">Loading</button>
</div>
</div>
<footer class="card-footer">
<button (click)="toCanvas()" class="card-footer-item button is-primary">
<span class="icon">
<i class="fas fa-cloud-download-alt" aria-hidden="true"></i>
</span>
</button>
<label class="checkbox">
<input type="checkbox" class="checkbox" [(ngModel)]="physicsEnabled"
(ngModelChange)="physicsEnabled = $event; updatePhysicsEnabled()">
Physics enabled
</label>
</footer>
</div>
</div>
</div>
</div>
<div class="analysis-view" *ngIf="selectedAnalysisToken">
<app-analysis-window [(token)]="selectedAnalysisToken"></app-analysis-window>
</div>
</div>
<div class="covex bar-right">
<div class="card bar-medium">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-info" aria-hidden="true"></i>
</span> {{currentProteinAc}} </p>
</header>
<div class="card-content">
<div *ngIf="showDetails">
<p><b>Protein Name:</b> {{ currentProteinAc }}</p>
<!-- <p><b>Gene Name(s):</b> <span *ngFor="let geneName of geneNames"> {{ geneName }}</span></p>-->
<!-- <p><b>Protein Name(s):</b> <span *ngFor="let proteinName of proteinNames"> {{ proteinName }}</span></p>-->
<p><b>Protein AC(s):</b>
<a href="https://www.uniprot.org/uniprot/{{proteinAc}}" target="_blank"
*ngFor="let proteinAc of proteinAcs">
{{ proteinAc }}
</a>
</p>
</div>
<div *ngIf="!showDetails">
Please select a node for further information.
<!-- <a (click)="selectedAnalysisToken = 'oy4UsXfBDobTucdQBhN9IUzfnpqKwzqx'"> Open Analysis Window </a>-->
</div>
</div>
</div>
<div class="card bar-medium">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-flask" aria-hidden="true"></i>
</span> Analysis
</p>
</header>
<div class="card-content">
<button class="button is-success" *ngIf="!inSelection(currentProteinAc)"
(click)="addToSelection(currentProteinAc)">Add to Analysis
</button>
<button class="button is-danger" *ngIf="inSelection(currentProteinAc)"
(click)="removeFromSelection(currentProteinAc)">Remove from Analysis
</button>
<p></p>
<button (click)="showAnalysisDialog = true"
class="button is-primary"
[disabled]="analysis.getCount() === 0">
<span>
<span class="icon">
<i class="fa fa-list"></i>
</span>
<span>
Open Analysis
</span>
</span>
</button>
</div>
<div class="card bar-large">
<header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-filter" aria-hidden="true"></i>
</span> Tasks
</p>
</header>
<div class="card-content">
<app-task-list [(token)]="selectedAnalysisToken"></app-task-list>
</div>
</div>
<div class="card bar-large"> <header class="card-header">
<p class="card-header-title">
<span class="icon">
<i class="fas fa-filter" aria-hidden="true"></i>
</span> Selection
</p>
</header>
<div class="card-content overflow">
<table class="table">
<thead>
<tr>
<td>AC</td>
<td>Actions</td>
</tr>
</thead>
<tbody>
<tr *ngFor="let p of analysis.getSelection()">
<td>{{p.proteinAc}}</td>
<td>
<button (click)="analysis.removeProtein(p)" class="button is-small is-danger">
<i class="fa fa-trash"></i>
</button>
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</div>
</div>