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README.md

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    • Stefan Kurtz's avatar
    Initial version of phybema and first test data set
    Kurtz, Prof. Dr. Stefan authored 
    differences to Phybema as described in the B.Sc.-thesis of Birgitta P"auker:
  1) use a python implementation of neighor joining. This saves
     system call since the neighbor-joining algorithm is called
     as a python function
  2) conversion of output format is not necessary anymore. For
     all distance estimators we require that they output a matrix in
     phylip-format, either as a triangle or full matrix and with or
     without zero-values on the main diagonal
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    README.md 78 B

    Phybema

    Sources and Data for the Phylogenetic Benchmarking Project Phybema