Added the TreeCmp source code

...v1.1-b308/TreeCmp/examples/scaled/test_set.trees.r.mp.out

...v1.1-b308/TreeCmp/examples/scaled/test_set.trees.r.ms.out

src_external/TreeCmp_v1.1-b308/TreeCmp/src/treecmp/Main.java

...reeCmp_v1.1-b308/TreeCmp/src/treecmp/command/Command.java

...mp_v1.1-b308/TreeCmp/src/treecmp/command/RunMCommand.java

...mp_v1.1-b308/TreeCmp/src/treecmp/command/RunRCommand.java

...mp_v1.1-b308/TreeCmp/src/treecmp/command/RunSCommand.java

...mp_v1.1-b308/TreeCmp/src/treecmp/command/RunWCommand.java

...08/TreeCmp/src/treecmp/commandline/CommandLineParser.java

...eeCmp_v1.1-b308/TreeCmp/src/treecmp/common/AlignInfo.java

...Cmp_v1.1-b308/TreeCmp/src/treecmp/common/AlignWriter.java

.../TreeCmp/src/treecmp/common/ClustIntersectInfoMatrix.java

...Cmp_v1.1-b308/TreeCmp/src/treecmp/common/ClusterDist.java

...Cmp_v1.1-b308/TreeCmp/src/treecmp/common/IntNodePair.java

...eeCmp_v1.1-b308/TreeCmp/src/treecmp/common/LapSolver.java

....1-b308/TreeCmp/src/treecmp/common/ProgressIndicator.java

...Cmp_v1.1-b308/TreeCmp/src/treecmp/common/ReportUtils.java

...eeCmp_v1.1-b308/TreeCmp/src/treecmp/common/SplitDist.java

..._v1.1-b308/TreeCmp/src/treecmp/common/StatCalculator.java

...308/TreeCmp/src/treecmp/common/SummaryStatCalculator.java