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Created with Raphaël 2.2.012Sep11914Jul1312Added the EvolSimulator configuration filesmastermasterAdded simulated data with variation of the mean number of LGT eventsAdded simulated data with variation of the maximum evolutionary distance of LGT eventsAdded simulated data with variation of the mutation rateAdded the TreeCmp source codeRemoving stand alones and addind author informationRemoving files from an older phybema versionAdded READMEReference tree for 143 data set with 10 character genome namesremoving the old format convertercut genome names after 10 characters, replace nan with 1.0 in distance matricesReduce the taxa names to 10 characters143 bacterial and archaeal data set addedAdded option -o none to allow remote useAdded Ecoli dataset with tree, add clean goal, improve logsYersinia data set addedAdded program to calculate ANI based on nucmerInitial version of phybema and first test data setInitial commit