Skip to content
Snippets Groups Projects
Select Git revision
  • 2e5e0954d5879214dd144e60be9e1b850f74d7b2
  • main default protected
  • seed_variation_ruegen
  • cami_seed_variation
  • cami_restructured
  • camis
6 results

experiment2_run.py

Blame
    • Code owners
    Assign users and groups as approvers for specific file changes. Learn more.
    experiment2_run.py 1.47 KiB
    1
    2
    3
    4
    5
    6
    7
    8
    9
    10
    11
    12
    13
    14 
    

    

    

    #!/usr/bin/env python3
import pwd
import sys
from os import chdir
import subprocess


chdir((sys.argv[0].rsplit('/', 1))[0])
networkfile = "../data/input/networks/biogrid_all_4.4.217.tsv"
for seedfile in "../data/input/seeds/ex1_seeds/adhd.txt ../data/input/seeds/ex1_seeds/alcl.txt ../data/input/seeds/ex1_seeds/alzheimer.txt ../data/input/seeds/ex1_seeds/aplastic_anemia-inherited.txt ../data/input/seeds/ex1_seeds/asd_autism.txt ../data/input/seeds/ex1_seeds/asthma.txt ../data/input/seeds/ex1_seeds/cerebellar\ ataxia.txt ../data/input/seeds/ex1_seeds/cystic_fibrosis.txt ../data/input/seeds/ex1_seeds/diabetes_mellitus.txt ../data/input/seeds/ex1_seeds/example_seeds.txt ../data/input/seeds/ex1_seeds/heart_failure.txt ../data/input/seeds/ex1_seeds/heart_valve_disorder.txt ../data/input/seeds/ex1_seeds/hemophilia.txt ../data/input/seeds/ex1_seeds/hereditary_breast_cancer.txt ../data/input/seeds/ex1_seeds/joubert_syndrome.txt ../data/input/seeds/ex1_seeds/name.txt ../data/input/seeds/ex1_seeds/nsclc.txt ../data/input/seeds/ex1_seeds/obesity_disorder.txt ../data/input/seeds/ex1_seeds/ovarian_cancer.txt ../data/input/seeds/ex1_seeds/parkinson.txt ../data/input/seeds/ex1_seeds/sickle_cell_anemia.txt ../data/input/seeds/ex1_seeds/visual_epilepsy.txt".split(' '):
    identifier = seedfile.rsplit('.',1)[0].rsplit('/',1)[1]
    identifier = f'{identifier}_biogrid_all'
    command = f'./cami.py -n {networkfile} -s {seedfile} -id {identifier} -img -p --f;'
    subprocess.call(command, shell=True)