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Commit 164546a9 authored by Mia Le's avatar Mia Le
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Revert "added analysis results"

This reverts commit dd603cb1.
parent dd603cb1
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672
675
790
9349
4599
4352
57697
375748
10459
10293
7516
7518
134218
7372
29089
83990
84464
2623
25873
25886
11224
7124
6731
6160
6165
6138
6137
6135
6133
6125
6155
6154
6143
6141
6218
6210
6209
6204
6201
6235
6234
6233
6232
6231
6229
6223
79728
90121
65057
2177
2176
2178
2175
2188
2187
2189
2056
55215
2072
2067
55120
55159
5889
5888
27339
6194
641
100288687
29997
2033
5591
10413
6202
10614
3014
149041
84365
54386
2547
23521
6156
56257
988
51121
6780
79727
11103
6228
1540
7157
6152
3921
6168
10551
10856
3312
2099
6230
55226
gene index_in_graph cami_score degree_in_graph
27339 4608 3.5 263
6194 10049 3.0 685
641 6788 2.0 258
100288687 23685 2.0 82
29997 19088 2.0 64
2033 17 2.0 1675
5591 6938 2.0 298
10413 542 2.0 676
6202 13855 2.0 259
10614 671 2.0 196
3014 6820 2.0 368
149041 17450 2.0 327
84365 17327 2.0 189
54386 7607 2.0 114
2547 185 2.0 503
23521 14528 2.0 85
6156 14529 2.0 187
56257 12224 2.0 347
988 708 2.0 363
51121 19397 2.0 93
6780 14538 2.0 516
79727 19531 2.0 100
11103 19533 2.0 78
6228 17236 2.0 155
1540 11350 2.0 321
7157 345 2.0 3271
6152 17242 2.0 121
3921 8923 2.0 195
6168 17244 2.0 173
10551 15453 2.0 479
10856 4442 2.0 402
3312 608 2.0 776
2099 106 2.0 1495
6230 11245 2.0 144
55226 17403 2.0 76
,JI-based
GO.BP,0.5885416666666666
GO.CC,0.9947916666666666
GO.MF,0.9947916666666666
KEGG,0.2552083333333333
,JI-based
GO.BP,0.000999000999000999
GO.CC,0.000999000999000999
GO.MF,0.000999000999000999
KEGG,0.000999000999000999
gene
10521
988
10413
6147
1665
10644
4839
6428
6142
149041
5976
79009
23196
6194
23476
6130
65992
5591
22913
6175
6205
10594
8359
22938
6168
4809
9775
23481
6199
285855
2033
54542
6152
6224
9045
140801
57109
51663
6207
6124
1736
10642
6122
6217
4670
3608
1108
6187
11338
7157
6136
6230
1654
3312
2521
6176
23212
65095
117246
3184
4193
10551
5093
6161
10643
10492
55226
2078
6206
26986
9782
6139
1655
6780
6189
4736
23451
3014
6227
6156
8761
6228
26156
10949
6203
55646
6733
4609
4343
9584
23435
4174
6129
29889
27316
4000
79727
10614
6128
6222
6181
6202
3178
3609
10528
7706
26354
10940
56829
10969
7150
6191
10155
23560
6169
124245
51574
23223
55131
10664
23020
55299
328
56257
3428
6146
57062
6132
11103
29997
3191
3692
6625
9092
6188
6158
4841
1660
54606
4691
1915
6144
64318
3192
9790
10514
5501
8886
4869
3181
6208
1107
23076
2091
5728
4799
1025
6047
3187
51121
10189
84365
6134
5071
2099
2547
27339
23029
6432
6117
1994
9933
55661
9343
51602
3185
10236
23521
6157
6421
6193
4904
9188
3190
3921
3183
55720
2197
26155
100288687
6426
23524
,JI-based
GO.BP,0.3698630136986301
GO.CC,0.9315068493150684
GO.MF,0.9178082191780822
KEGG,0.1232876712328767
,JI-based
GO.BP,0.000999000999000999
GO.CC,0.000999000999000999
GO.MF,0.000999000999000999
KEGG,0.03896103896103896
gene
729475
113510
641
823
146956
54665
6194
353497
10011
6168
25900
157638
76915
10856
233826
6152
1540
23514
1063
199990
7517
80233
15951
375757
223
466
126074
23064
6159
128710
56647
7503
55226
201254
79008
116028
5892
22885
548593
6156
3280
6228
51171
734196
6835
6123
221927
6202
5890
10
339230
3832
11112
91442
692312
63979
54386
11103
29997
55010
85015
378708
100750225
9643
7288
19183
100327240
7156
51121
84365
4123
9946
80010
79840
2794
3921
100288687
80198
6230
,JI-based
GO.BP,0.8148148148148148
GO.CC,0.9814814814814815
GO.MF,1.0
KEGG,0.46296296296296297
,JI-based
GO.BP,0.000999000999000999
GO.CC,0.000999000999000999
GO.MF,0.000999000999000999
KEGG,0.000999000999000999
gene
988
7329
3611
5111
2314
10413
8651
7520
641
7157
149041
6776
6194
3312
79727
10614
1147
79155
5371
5295
3091
5591
51720
7428
2057
10783
5777
9636
10551
2099
2547
7316
7186
5451
10726
2885
7013
10856
23521
56257
8554
27161
54386
7874
55294
7555
2033
1540
6780
7341
5429
3551
11273
3014
CAMI predictions with 64 of initially 67 seeds: ['672', '675', '790', '9349', '4599', '4352', '57697', '375748', '10459', '10293', '7516', '7518', '134218', '7372', '29089', '83990', '84464', '2623', '25873', '25886', '11224', '7124', '6731', '6160', '6165', '6138', '6137', '6135', '6133', '6125', '6155', '6154', '6143', '6141', '6218', '6210', '6209', '6204', '6201', '6235', '6234', '6233', '6232', '6231', '6229', '6223', '79728', '90121', '65057', '2177', '2176', '2178', '2175', '2188', '2187', '2189', '2056', '55215', '2072', '2067', '55120', '55159', '5889', '5888'],
initially: ['672', '675', '790', '9349', '4599', '4352', '57697', '375748', '10459', '10293', '114086', '7516', '7518', '134218', '7372', '29089', '83990', '84464', '2623', '25873', '25886', '11224', '7124', '6731', '6160', '6165', '6138', '6137', '6135', '6133', '6125', '6155', '6154', '6143', '6141', '6218', '6210', '6209', '6204', '6201', '6235', '6234', '6233', '6232', '6231', '6229', '6223', '79728', '90121', '65057', '2177', '2176', '2178', '2175', '2188', '2187', '2189', '2056', '55215', '2072', '2067', '55120', '55159', '1437', '51816', '5889', '5888']
gene predicted_by cami_score index_in_graph degree_in_graph
5371 ['ROBUST'] 1.0 3 454
10644 ['DIAMOnD'] 1.0 12293 60
10949 ['DIAMOnD'] 1.0 12297 40
2794 ['DOMINO'] 1.0 17423 2
10643 ['DIAMOnD'] 1.0 12304 53
2033 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 17 1675
51602 ['DIAMOnD'] 1.0 12309 77
2885 ['ROBUST'] 1.0 23 1103
23435 ['DIAMOnD'] 1.0 12314 104
63979 ['DOMINO'] 1.0 21534 14
4343 ['DIAMOnD'] 1.0 12320 142
1994 ['DIAMOnD'] 1.0 15393 238
466 ['DOMINO'] 1.0 32 9
6169 ['DIAMOnD'] 1.0 12323 53
6203 ['DIAMOnD'] 1.0 12325 167
823 ['DOMINO'] 1.0 38 26
149041 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 17450 327
10664 ['DIAMOnD'] 1.0 9258 89
4174 ['DIAMOnD'] 1.0 49 122
3091 ['ROBUST'] 1.0 4150 829
6117 ['DIAMOnD'] 1.0 55 294
80198 ['DOMINO'] 1.0 8253 67
146956 ['DOMINO'] 1.0 8254 28
9782 ['DIAMOnD'] 1.0 4159 233
27316 ['DIAMOnD'] 1.0 4162 77
79727 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 19531 100
11103 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 19533 78
6139 ['DIAMOnD'] 1.0 16462 130
56829 ['DIAMOnD'] 1.0 19536 104
23029 ['DIAMOnD'] 1.0 19538 40
10521 ['DIAMOnD'] 1.0 4180 109
1540 ['CAMI', 'DOMINO', 'ROBUST'] 2.0 11350 321
5111 ['ROBUST'] 1.0 89 764
10551 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 15453 479
3428 ['DIAMOnD'] 1.0 10333 339
8359 ['DIAMOnD'] 1.0 12385 763
1915 ['DIAMOnD'] 1.0 100 215
2099 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 106 1495
6187 ['DIAMOnD'] 1.0 11371 281
7341 ['ROBUST'] 1.0 112 236
9636 ['ROBUST'] 1.0 4214 155
100750225 ['DOMINO'] 1.0 25731 4
100288687 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 23685 82
7329 ['ROBUST'] 1.0 133 640
7150 ['DIAMOnD'] 1.0 9351 134
23223 ['DIAMOnD'] 1.0 17548 50
79009 ['DIAMOnD'] 1.0 17551 44
79840 ['DOMINO'] 1.0 6287 7
23476 ['DIAMOnD'] 1.0 9365 595
8651 ['ROBUST'] 1.0 155 198
80233 ['DOMINO'] 1.0 11422 49
91442 ['DOMINO'] 1.0 11423 43
4000 ['DIAMOnD'] 1.0 165 507
6157 ['DIAMOnD'] 1.0 14504 85
5429 ['ROBUST'] 1.0 9389 105
2547 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 185 503
4609 ['DIAMOnD'] 1.0 6330 1367
7520 ['ROBUST'] 1.0 187 342
55131 ['DIAMOnD'] 1.0 14526 46
23521 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 14528 85
6156 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 14529 187
4904 ['DIAMOnD'] 1.0 193 144
23196 ['DIAMOnD'] 1.0 19656 66
6780 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 14538 516
6144 ['DIAMOnD'] 1.0 14539 124
223 ['DOMINO'] 1.0 17614 4
6208 ['DIAMOnD'] 1.0 4303 190
4123 ['DOMINO'] 1.0 17616 2
7288 ['DOMINO'] 1.0 17617 2
9946 ['DOMINO'] 1.0 17619 4
11112 ['DOMINO'] 1.0 17620 2
1736 ['DIAMOnD'] 1.0 13530 101
8886 ['DIAMOnD'] 1.0 20699 49
9775 ['DIAMOnD'] 1.0 4314 124
3178 ['DIAMOnD'] 1.0 221 501
4839 ['DIAMOnD'] 1.0 223 112
5071 ['DIAMOnD'] 1.0 4330 956
22938 ['DIAMOnD'] 1.0 235 241
19183 ['DOMINO'] 1.0 24816 2
76915 ['DOMINO'] 1.0 24817 2
4809 ['DIAMOnD'] 1.0 10486 53
285855 ['DIAMOnD'] 1.0 21751 24
3187 ['DIAMOnD'] 1.0 9468 153
353497 ['DOMINO'] 1.0 13566 16
54542 ['DIAMOnD'] 1.0 12544 147
23451 ['DIAMOnD'] 1.0 6409 167
4670 ['DIAMOnD'] 1.0 6410 91
23020 ['DIAMOnD'] 1.0 6420 186
3184 ['DIAMOnD'] 1.0 9493 191
10594 ['DIAMOnD'] 1.0 6423 385
734196 ['DOMINO'] 1.0 24861 5
100327240 ['DOMINO'] 1.0 24862 3
9343 ['DIAMOnD'] 1.0 6432 316
378708 ['DOMINO'] 1.0 13605 97
201254 ['DOMINO'] 1.0 13606 68
23514 ['DOMINO'] 1.0 24872 12
729475 ['DOMINO'] 1.0 24881 3
6176 ['DIAMOnD'] 1.0 307 73
6181 ['DIAMOnD'] 1.0 308 87
3608 ['DIAMOnD'] 1.0 4410 124
116028 ['DOMINO'] 1.0 13628 15
3280 ['DOMINO'] 1.0 8510 50
3192 ['DIAMOnD'] 1.0 8514 307
10783 ['ROBUST'] 1.0 6466 56
3692 ['DIAMOnD'] 1.0 6474 75
3181 ['DIAMOnD'] 1.0 8523 113
221927 ['DOMINO'] 1.0 16714 3
56647 ['DOMINO'] 1.0 4429 43
54606 ['DIAMOnD'] 1.0 6480 37
10514 ['DIAMOnD'] 1.0 6481 119
7157 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 345 3271
10856 ['CAMI', 'DOMINO', 'ROBUST'] 2.0 4442 402
7428 ['ROBUST'] 1.0 358 718
6207 ['DIAMOnD'] 1.0 9581 213
10155 ['DIAMOnD'] 1.0 367 573
55646 ['DIAMOnD'] 1.0 6522 59
6147 ['DIAMOnD'] 1.0 6523 226
7555 ['ROBUST'] 1.0 6524 23
6122 ['DIAMOnD'] 1.0 6525 206
6421 ['DIAMOnD'] 1.0 382 125
4841 ['DIAMOnD'] 1.0 383 150
79155 ['ROBUST'] 1.0 7549 169
7706 ['DIAMOnD'] 1.0 9604 425
548593 ['DOMINO'] 1.0 16773 18
6224 ['DIAMOnD'] 1.0 16774 173
10236 ['DIAMOnD'] 1.0 8584 86
10492 ['DIAMOnD'] 1.0 8585 152
2521 ['DIAMOnD'] 1.0 8586 200
23481 ['DIAMOnD'] 1.0 16779 81
1655 ['DIAMOnD'] 1.0 7565 175
6134 ['DIAMOnD'] 1.0 10659 242
7013 ['ROBUST'] 1.0 7587 159
9045 ['DIAMOnD'] 1.0 10665 197
8761 ['DIAMOnD'] 1.0 10666 63
3609 ['DIAMOnD'] 1.0 4532 224
54386 ['CAMI', 'DOMINO', 'ROBUST'] 2.0 7607 114
1654 ['DIAMOnD'] 1.0 6585 93
6047 ['DIAMOnD'] 1.0 442 249
6205 ['DIAMOnD'] 1.0 6597 137
55299 ['DIAMOnD'] 1.0 6606 66
6189 ['DIAMOnD'] 1.0 6608 257
1063 ['DOMINO'] 1.0 14800 5
22913 ['DIAMOnD'] 1.0 16851 63
5501 ['DIAMOnD'] 1.0 8664 636
65992 ['DIAMOnD'] 1.0 6626 167
6776 ['ROBUST'] 1.0 484 81
6426 ['DIAMOnD'] 1.0 4586 141
23560 ['DIAMOnD'] 1.0 6636 80
6142 ['DIAMOnD'] 1.0 6645 180
328 ['DIAMOnD'] 1.0 9718 139
27339 ['CAMI', 'DIAMOnD'] 3.5 4608 263
2314 ['ROBUST'] 1.0 517 45
5892 ['DOMINO'] 1.0 522 59
10940 ['DIAMOnD'] 1.0 7700 62
117246 ['DIAMOnD'] 1.0 14869 96
6130 ['DIAMOnD'] 1.0 13853 241
10413 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 542 676
6202 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 13855 259
8554 ['ROBUST'] 1.0 543 171
2091 ['DIAMOnD'] 1.0 6688 464
3191 ['DIAMOnD'] 1.0 550 122
6625 ['DIAMOnD'] 1.0 6696 386
6428 ['DIAMOnD'] 1.0 6699 84
10189 ['DIAMOnD'] 1.0 7724 115
4736 ['DIAMOnD'] 1.0 11823 163
6124 ['DIAMOnD'] 1.0 11824 235
6175 ['DIAMOnD'] 1.0 11825 223
4869 ['DIAMOnD'] 1.0 6703 502
29889 ['DIAMOnD'] 1.0 6708 58
6146 ['DIAMOnD'] 1.0 12856 100
55661 ['DIAMOnD'] 1.0 6712 52
6158 ['DIAMOnD'] 1.0 6715 52
10969 ['DIAMOnD'] 1.0 6725 81
6432 ['DIAMOnD'] 1.0 6732 75
27161 ['ROBUST'] 1.0 7760 191
5295 ['ROBUST'] 1.0 6738 519
4691 ['DIAMOnD'] 1.0 6741 316
55294 ['ROBUST'] 1.0 6748 515
9933 ['DIAMOnD'] 1.0 20063 68
3312 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 608 776
9790 ['DIAMOnD'] 1.0 20064 25
7874 ['ROBUST'] 1.0 613 753
9188 ['DIAMOnD'] 1.0 6762 90
3185 ['DIAMOnD'] 1.0 10863 64
57062 ['DIAMOnD'] 1.0 6769 70
7186 ['ROBUST'] 1.0 634 729
22885 ['DOMINO'] 1.0 20092 2
23064 ['DOMINO'] 1.0 20093 7
375757 ['DOMINO'] 1.0 17022 6
26156 ['DIAMOnD'] 1.0 6784 79
26155 ['DIAMOnD'] 1.0 13953 35
641 ['CAMI', 'DOMINO', 'ROBUST'] 2.0 6788 258
7156 ['DOMINO'] 1.0 6789 51
124245 ['DIAMOnD'] 1.0 16009 281
29997 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 19088 64
3611 ['ROBUST'] 1.0 657 143
6129 ['DIAMOnD'] 1.0 8853 174
6193 ['DIAMOnD'] 1.0 17053 160
6206 ['DIAMOnD'] 1.0 17054 119
10614 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 671 196
6222 ['DIAMOnD'] 1.0 17055 63
3014 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 6820 368
5777 ['ROBUST'] 1.0 6821 184
1665 ['DIAMOnD'] 1.0 10922 74
15951 ['DOMINO'] 1.0 6828 5
6128 ['DIAMOnD'] 1.0 8877 200
6191 ['DIAMOnD'] 1.0 8878 211
10 ['DOMINO'] 1.0 21175 5
157638 ['DOMINO'] 1.0 21176 7
6188 ['DIAMOnD'] 1.0 8891 294
10011 ['DOMINO'] 1.0 9920 4
988 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 708 363
7503 ['DOMINO'] 1.0 6859 2
9584 ['DIAMOnD'] 1.0 6864 231
3551 ['ROBUST'] 1.0 7895 476
6227 ['DIAMOnD'] 1.0 8922 37
3921 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 8923 195
23524 ['DIAMOnD'] 1.0 732 124
6132 ['DIAMOnD'] 1.0 8929 175
2078 ['DIAMOnD'] 1.0 9958 146
4193 ['DIAMOnD'] 1.0 6890 2073
6159 ['DOMINO'] 1.0 10990 23
1025 ['DIAMOnD'] 1.0 6901 586
64318 ['DIAMOnD'] 1.0 19198 28
5976 ['DIAMOnD'] 1.0 7934 167
11273 ['ROBUST'] 1.0 9982 28
23076 ['DIAMOnD'] 1.0 9996 47
5890 ['DOMINO'] 1.0 6924 35
7517 ['DOMINO'] 1.0 6926 47
5728 ['DIAMOnD'] 1.0 6927 388
26986 ['DIAMOnD'] 1.0 787 308
9643 ['DOMINO'] 1.0 7957 115
5591 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 6938 298
6835 ['DOMINO'] 1.0 15138 4
233826 ['DOMINO'] 1.0 23332 8
6199 ['DIAMOnD'] 1.0 14117 56
55010 ['DOMINO'] 1.0 23333 6
80010 ['DOMINO'] 1.0 6960 34
51720 ['ROBUST'] 1.0 12088 202
51171 ['DOMINO'] 1.0 25401 2
65095 ['DIAMOnD'] 1.0 18234 24
26354 ['DIAMOnD'] 1.0 11067 72
113510 ['DOMINO'] 1.0 23356 11
6194 ['CAMI', 'DIAMOnD', 'DOMINO', 'ROBUST'] 3.0 10049 685
1147 ['ROBUST'] 1.0 6979 344
339230 ['DOMINO'] 1.0 22345 9
1660 ['DIAMOnD'] 1.0 6989 148
692312 ['DOMINO'] 1.0 22352 4
7316 ['ROBUST'] 1.0 6994 1974
6228 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 17236 155
6152 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 17242 121
6168 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 17244 173
6161 ['DIAMOnD'] 1.0 17262 67
2197 ['DIAMOnD'] 1.0 17263 28
1108 ['DIAMOnD'] 1.0 8047 478
1107 ['DIAMOnD'] 1.0 878 263
57109 ['DIAMOnD'] 1.0 10104 53
85015 ['DOMINO'] 1.0 12152 25
3832 ['DOMINO'] 1.0 9089 22
6123 ['DOMINO'] 1.0 17286 4
2057 ['ROBUST'] 1.0 9095 56
5093 ['DIAMOnD'] 1.0 14222 109
9092 ['DIAMOnD'] 1.0 12177 103
5451 ['ROBUST'] 1.0 8084 88
54665 ['DOMINO'] 1.0 24474 8
199990 ['DOMINO'] 1.0 16289 63
3183 ['DIAMOnD'] 1.0 4008 164
6733 ['DIAMOnD'] 1.0 4012 275
11338 ['DIAMOnD'] 1.0 4013 290
84365 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 17327 189
55720 ['DIAMOnD'] 1.0 17328 68
51663 ['DIAMOnD'] 1.0 12208 38
126074 ['DOMINO'] 1.0 18356 21
10726 ['ROBUST'] 1.0 8120 53
56257 ['CAMI', 'DIAMOnD', 'ROBUST'] 2.0 12224 347
140801 ['DIAMOnD'] 1.0 17344 40
23212 ['DIAMOnD'] 1.0 17346 93
25900 ['DOMINO'] 1.0 4032 4
51121 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 19397 93
4799 ['DIAMOnD'] 1.0 13276 53
6136 ['DIAMOnD'] 1.0 11243 127
6217 ['DIAMOnD'] 1.0 11244 198
6230 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 11245 144
3190 ['DIAMOnD'] 1.0 4082 240
79008 ['DOMINO'] 1.0 12275 7
128710 ['DOMINO'] 1.0 12276 22
10642 ['DIAMOnD'] 1.0 12281 65
51574 ['DIAMOnD'] 1.0 12282 318
55226 ['CAMI', 'DIAMOnD', 'DOMINO'] 2.0 17403 76
10528 ['DIAMOnD'] 1.0 12284 296
http://degradome.uniovi.es/cgi-bin/nVenn/nvenn.cgi?uid=DD40057E
\ No newline at end of file
gene index_in_graph cami_score degree_in_graph
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