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Commit ad06a6c0 authored by Le, Mia's avatar Le, Mia
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edited consensus

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with 41 additions and 20 deletions
cami_src/cami_suite.py
+ 41
− 20
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...@@ -366,40 +366,61 @@ class cami(): ...@@ -366,40 +366,61 @@ class cami():
'intersection':cami_v1.make_intersection, 'intersection':cami_v1.make_intersection,
'first_neighbours': cami_v1.make_first_neighbor_result_set} 'first_neighbours': cami_v1.make_first_neighbor_result_set}
} }
params_tr1 = {'hub_penalty': [0.5], params_tr1 = {'hub_penalty': [0.5],
'damping_factor': [0.85], 'damping_factor': [0.85],
'confidence_level': [0.35, 0.5], 'confidence_level': [0.2, 0.5],
'ranking': ['trustrank'], 'ranking': ['trustrank'],
'function': {'cami_v2': cami_v2.run_cami}} 'function': {'cami_v2': cami_v2.run_cami}}
params_tr2 = {'hub_penalty': [0.5], params_tr2 = {'hub_penalty': [0.5],
'damping_factor': [0.1], 'damping_factor': [0.85, 0.75],
'confidence_level': [0.2], 'confidence_level': [0.2, 0.35],
'ranking': ['trustrank'], 'ranking': ['trustrank'],
'function': {'cami_v3': cami_v3.run_cami} 'function': {'cami_v3': cami_v3.run_cami}
} }
params_tr3 = {'hub_penalty': [0.5], params_tr3 = {'hub_penalty': [0.5],
'damping_factor': [0.1, 0.25, 0.75], 'damping_factor': [0.1, 0.25],
'confidence_level': [0.2], 'confidence_level': [0.2],
'ranking': ['trustrank'], 'ranking': ['trustrank'],
'function': {'cami_v2': cami_v2.run_cami} 'function': {'cami_v2': cami_v2.run_cami}
} }
# best for each disease set
# params_tr1 = {'hub_penalty': [0.5],
# 'damping_factor': [0.85],
# 'confidence_level': [0.35, 0.5],
# 'ranking': ['trustrank'],
# 'function': {'cami_v2': cami_v2.run_cami}}
params_tr4 = {'hub_penalty': [0.5], # params_tr2 = {'hub_penalty': [0.5],
'damping_factor': [0.85], # 'damping_factor': [0.1],
'confidence_level': [0.35, 0.5], # 'confidence_level': [0.2],
'ranking': ['trustrank'], # 'ranking': ['trustrank'],
'function': {'cami_v2': cami_v2.run_cami} # 'function': {'cami_v3': cami_v3.run_cami}
} # }
params_tr5 = {'hub_penalty': [0.5], # params_tr3 = {'hub_penalty': [0.5],
'damping_factor': [0.75], # 'damping_factor': [0.1, 0.25, 0.75],
'confidence_level': [0.2, 0.5], # 'confidence_level': [0.2],
'ranking': ['trustrank'], # 'ranking': ['trustrank'],
'function': {'cami_v3': cami_v3.run_cami} # 'function': {'cami_v2': cami_v2.run_cami}
} # }
# params_tr4 = {'hub_penalty': [0.5],
# 'damping_factor': [0.85],
# 'confidence_level': [0.35, 0.5],
# 'ranking': ['trustrank'],
# 'function': {'cami_v2': cami_v2.run_cami}
# }
# params_tr5 = {'hub_penalty': [0.5],
# 'damping_factor': [0.75],
# 'confidence_level': [0.2, 0.5],
# 'ranking': ['trustrank'],
# 'function': {'cami_v3': cami_v3.run_cami}
# }
# params_tr = {'hub_penalty': [0.5], # params_tr = {'hub_penalty': [0.5],
# 'damping_factor': [0.1, 0.25, 0.5, 0.75, 0.85], # 'damping_factor': [0.1, 0.25, 0.5, 0.75, 0.85],
...@@ -418,9 +439,9 @@ class cami(): ...@@ -418,9 +439,9 @@ class cami():
generate_param_combinations(params_1)+\ generate_param_combinations(params_1)+\
generate_param_combinations(params_tr1)+\ generate_param_combinations(params_tr1)+\
generate_param_combinations(params_tr2)+\ generate_param_combinations(params_tr2)+\
generate_param_combinations(params_tr3)+\ generate_param_combinations(params_tr3)#+\
generate_param_combinations(params_tr4)+\ # generate_param_combinations(params_tr4)#+\
generate_param_combinations(params_tr5) # generate_param_combinations(params_tr5)
#generate_param_combinations(params_b_m) #generate_param_combinations(params_b_m)
camis = {} camis = {}
for setting in cami_setting_list: for setting in cami_setting_list:
......
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