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Commit b72c3098 authored by AndiMajore's avatar AndiMajore
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all camis active

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cami_src/cami_suite.py
+ 27
− 27
View file @ b72c3098
...@@ -287,45 +287,45 @@ class cami(): ...@@ -287,45 +287,45 @@ class cami():
camis = { camis = {
'cami_v1': {'function': cami_v1.run_cami, 'params': {'consens_threshold': consens_threshold}}, 'cami_v1': {'function': cami_v1.run_cami, 'params': {'consens_threshold': consens_threshold}},
# 'cami_v2_param1_tr': {'function': cami_v2.run_cami, 'params': { 'cami_v2_param1_tr': {'function': cami_v2.run_cami, 'params': {
# 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75
# }}, }},
# 'cami_v2_param1_bc': {'function': cami_v2.run_cami, 'params': { 'cami_v2_param1_bc': {'function': cami_v2.run_cami, 'params': {
# 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'betweenness' 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'betweenness'
# }}, }},
# 'cami_v2_param1_m': {'function': cami_v2.run_cami, 'params': { 'cami_v2_param1_m': {'function': cami_v2.run_cami, 'params': {
# 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'must' 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'must'
# }}, }},
'cami_v2_param2_tr': {'function': cami_v2.run_cami, 'params': { 'cami_v2_param2_tr': {'function': cami_v2.run_cami, 'params': {
'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5
}}, }},
'cami_v2_param2_m': {'function': cami_v2.run_cami, 'params': { 'cami_v2_param2_m': {'function': cami_v2.run_cami, 'params': {
'hub_penalty': 0, 'damping_factor': 0.7, 'ranking': 'must', 'hub_penalty': 0, 'damping_factor': 0.7, 'ranking': 'must',
}}, }},
# 'cami_v2_param2_bc': {'function': cami_v2.run_cami, 'params': { 'cami_v2_param2_bc': {'function': cami_v2.run_cami, 'params': {
# 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'betweenness' 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'betweenness'
# }}, }},
# 'cami_v3_param1_tr': {'function': cami_v3.run_cami, 'params': { 'cami_v3_param1_tr': {'function': cami_v3.run_cami, 'params': {
# 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75
# }}, }},
# 'cami_v3_param1_bc': {'function': cami_v3.run_cami, 'params': { 'cami_v3_param1_bc': {'function': cami_v3.run_cami, 'params': {
# 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'betweenness' 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'betweenness'
# }}, }},
# 'cami_v3_param1_m': {'function': cami_v3.run_cami, 'params': { 'cami_v3_param1_m': {'function': cami_v3.run_cami, 'params': {
# 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'must' 'hub_penalty': 0.8, 'damping_factor': 0.5, 'confidence_level': 0.75, 'ranking': 'must'
# }}, }},
'cami_v3_param2_tr': {'function': cami_v3.run_cami, 'params': { 'cami_v3_param2_tr': {'function': cami_v3.run_cami, 'params': {
'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'trustrank' 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'trustrank'
}}, }},
# 'cami_v3_param2_bc': {'function': cami_v3.run_cami, 'params': { 'cami_v3_param2_bc': {'function': cami_v3.run_cami, 'params': {
# 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'betweenness' 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'betweenness'
# }}, }},
'cami_v3_param2_m': {'function': cami_v3.run_cami, 'params': { 'cami_v3_param2_m': {'function': cami_v3.run_cami, 'params': {
'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'must' 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'must'
}}, }},
# 'cami_v3_param3_m': {'function': cami_v3.run_cami, 'params': { 'cami_v3_param3_m': {'function': cami_v3.run_cami, 'params': {
# 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'must', 'trees': 15 'hub_penalty': 0, 'damping_factor': 0.7, 'confidence_level': 0.5, 'ranking': 'must', 'trees': 15
# }}, }},
} }
for cami_method_name, cami_params in camis.items(): for cami_method_name, cami_params in camis.items():
......
data/tmp/example_run/DIAMOnD/DIAMOnD_out.txt
+ 9
− 9
View file @ b72c3098
...@@ -5,9 +5,9 @@ ...@@ -5,9 +5,9 @@
4 20662 9.854602493455391e-16 4 20662 9.854602493455391e-16
5 4538 1.4901569377288262e-15 5 4538 1.4901569377288262e-15
6 20753 8.016884001570942e-18 6 20753 8.016884001570942e-18
7 9325 6.263567028730509e-18 7 4587 6.263567028730509e-18
8 15251 6.190983401441531e-19 8 15251 6.190983401441531e-19
9 4587 2.4259191061742027e-20 9 9325 2.4259191061742027e-20
10 20642 1.0540752325081272e-18 10 20642 1.0540752325081272e-18
11 4575 7.503376809979676e-16 11 4575 7.503376809979676e-16
12 12502 4.90800391980581e-14 12 12502 4.90800391980581e-14
...@@ -36,13 +36,13 @@ ...@@ -36,13 +36,13 @@
35 3989 4.929325451244205e-14 35 3989 4.929325451244205e-14
36 6685 1.2333649268213917e-11 36 6685 1.2333649268213917e-11
37 11672 2.4548179875754814e-11 37 11672 2.4548179875754814e-11
38 21313 2.6731662685839115e-11 38 21319 2.6731662685839115e-11
39 21312 2.851377353156071e-11 39 21313 2.851377353156071e-11
40 21331 3.0383529172974295e-11 40 21321 3.0383529172974295e-11
41 21214 3.234375686155525e-11 41 21331 3.234375686155525e-11
42 21321 3.43973287257814e-11 42 21342 3.43973287257814e-11
43 21342 3.6547161771142566e-11 43 21214 3.6547161771142566e-11
44 21319 3.8796217880136875e-11 44 21312 3.8796217880136875e-11
45 9430 1.753322593604545e-10 45 9430 1.753322593604545e-10
46 12155 7.726323004315891e-11 46 12155 7.726323004315891e-11
47 11350 1.070505090400452e-11 47 11350 1.070505090400452e-11
......
data/tmp/example_run/ROBUST/ROBUST_out.txt
+ 94
− 91
View file @ b72c3098
20659 21366 21341 21328
20659 20662 21357 563
12270 4587 20662 20659
12270 4153 20662 21310
12270 25067 20662 20663
12270 4227 20662 20660
12270 9325 17873 11972
12270 6686 17873 9238
12270 510 17873 431
563 21357 17873 9285
563 9823 17873 345
563 21213 17873 4153
563 8034 17873 4227
563 4245 17873 6673
563 6673 20663 20659
563 14665 21279 21210
563 9285
563 14795
21340 21366
21340 17216
21210 21279
21210 14693
21210 510
21210 6686
21209 17873
21209 21213
21209 67
21209 21279
20663 20660
20663 20661
20663 20662
21310 15917
21310 11972
21310 20662
21310 4227
20661 20662
8907 288
21279 11972 21279 11972
21279 21328 21279 21328
21279 20023 21279 20023
21279 15917 21279 15917
21279 20787 21279 20787
4587 11972 14487 16935
4587 20787 14487 8350
4587 20023 856 4103
856 12155
856 345
856 9430
856 67
856 9751
21352 9238
21352 237
21352 340
15917 21310
15917 14665
15917 6686
15917 9751
15917 14795
15917 510
237 20166 237 20166
237 21352 12155 11972
16935 14487 12155 20787
4103 9369
4227 12270
4227 11972
4227 21310
4227 21328
4227 18437
21209 11972
21209 67
21209 21211
16935 16155 16935 16155
11972 17873 563 4245
563 9285
563 21328
563 14665
563 9823
563 8034
563 6673
563 14795
563 21211
12270 25067
12270 9325
12270 4587
12270 4153
12270 510
12270 6686
20661 20659
20023 11972
20023 510
20023 4587
510 18437
510 21328
510 21210
510 20787
510 21310
20787 11972
20787 8034
20787 25067
20787 6686
20787 4587
8350 21366
23285 288
11972 18437 11972 18437
11972 21310
11972 4245
11972 6907 11972 6907
11972 9823
11972 14693
11972 25067 11972 25067
11972 8034
11972 6686 11972 6686
11972 9325
11972 25258 11972 25258
11972 4245 11972 9325
11972 14693
11972 9823
11972 4587
11972 9430 11972 9430
11972 4227 11972 8034
11972 510
23285 288
21341 21328
21328 510
21328 4227
20660 21366
9369 4103
9369 6907
14487 8350
21366 8350
15917 20787
15917 14665
15917 9751
15917 9325
15917 14795
21352 9238
21352 340
20023 17873
20023 510
288 431
20787 6686
20787 8034
20787 25067
20166 340
20166 25545 20166 25545
4103 856 20166 340
431 17873 21210 6686
9238 17873 21210 14693
17873 4153 20660 20659
17873 345 21340 21366
17873 6673 21340 17216
17873 4227 21366 20659
17873 9285 8907 288
17873 510 431 288
17873 14795 25545 16155
16155 17216 9369 6907
16155 25545
16155 25258 16155 25258
340 856 16155 17216
856 25545
856 345
856 9751
856 67
856 9430
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