Mosaic data removed and configuration guide and README updated.

README.md

@@ -29,23 +29,6 @@ You should be able to either use the executable file to run the model or compile
 If you don't want to complie the model on your own computer, you should be able to use the provided executable (samsim.x). 
 This way, you don't need to have a fortran compiler on your local maschine. You only need to have python installed.
 
-To run the model, you simply have to build a config.json file for the testcase you want to run by running the 
-respective build_config file with python.
-
-Now you can simply run samsim by running the executable file. Windows user will need to run it from their Linux 
-sub-system which is activated by typing into the console :
-
-````bash
-bash
-````
-
-Now you can run the model from the home directory (samsim3.0) by running the executable. To do this type:
-````bash
-./samsim.x
-````
-
-After Samsim has finished you can plot the output as described below :)
-
 
 ## Compiling the Model
 
@@ -107,23 +90,44 @@ from the home directory.
 
 After compiling the model (see above) you can produce different model runs by changing the model configuration in the 
 config.json file and the respective input files which can be found in the input folder.
-
-Testcase 1-4 can be produced by simply running the respective config file from Python_files/Code/build_config_files. 
-Running one of the build scripts produces a config.json and a description.txt file which are stored in the folder 
-Run_specifics. Furthermore, it creates the input files for SW, LW, sensitive and latent heatflux, for solid and liquid
+Four testcases are available for you to start with and explore the behaviour of samsim. To run those testcases, you need 
+to run the respective build_config.py script. Running one of the build_config.py scripts produces a config.json and a 
+description.txt file which are stored in the folder Run_specifics. 
+Furthermore, it creates the input files for SW, LW, sensitive and latent heatflux, for solid and liquid
 precipitation, 2m temperature, surface temperature, bottom temperature, bottom salinity and bottom heatflux. 
 If one of those input variables is not used, it is set to zero.
 
-To run the model with initial sea-ice profiles, use the build_config_initial_state.py script. 
+The config.json file for testcase 1 can be produced with the makefile. 
+Windows user should activate their Linux sub-system to be 
+able to use the makefile by typing:
+````bash
+bash
+````
+into the console. Now you can use all Linux commands. The config.json file for testcase 1 can be created with the makefile by typing 
+
+````bash
+make config.json
+````
+
+If you want to run one of the testcases 2-4, you need to run the respective build_config.py file with python
+which can simpely be done by typing 
+
+````bash
+python3 Python_files/Code/build_config_files/build_config_x.py
+````
+and replace x with the number of the testcase you want to run.
+
+To run the model with initial sea-ice profiles, run the build_config_initial_state.py script. 
 
 If you want to set up your own model run, you need to change the config.json file and the input files accordingly. 
-For further information on how to use the config files, please have a look at the Configuration Guide in the documentation folder.
+For further information on how to use the build_config files, please have a look at the Configuration Guide in the documentation folder.
 
-After producing the config.json file and putting the right inputs in the input folder, SAMSIM just need to be run by typing: 
+After producing the config.json file and putting the right inputs in the input folder, SAMSIM just needs to be run by typing: 
 
 ````bash
 ./samsim.x
 ````
+This can either be the pre-compiled samsim.x file from the repository or the one you compiled yourself. 
 
 ### Files you need to run SAMSIM