updated import issue für disgenet

Dockerfile

@@ -27,6 +27,6 @@ COPY ./import-data.sh /import.sh
 
 COPY . /usr/src/netex/
 
-EXPOSE 8000
+#EXPOSE 8000
 
 ENTRYPOINT ["sh", "/entrypoint.sh"]

README.md

@@ -6,7 +6,9 @@ python3 manage.py createfixtures
 
 python3 manage.py populate_db --delete_model PPI,PDI,Drug,Protein,Tissue,Disorder,PDiAssociations
 
-python3 manage.py populate_db --data_dir . -p protein-file.txt -exp gene_tissue_expression.gct
+python3 manage.py populate_db --data_dir . -p protein-file.txt
+
+python3 manage.py populate_db --data_dir . -exp gene_tissue_expression.gct
 
 python3 manage.py populate_db --data_dir . -dr drug-file.txt -pdr drug-protein-interaction.txt
 
@@ -22,5 +24,5 @@ python3 manage.py make_graphs
 ``docker-compose up --build``
 
 
-### Docker DEV environemt (building is optional)
+### Docker DEV environment (building is optional)
 ``docker-compose -f docker-compose.yml -f docker-compose.dev.yml up -d --build``

import-data.sh

 #!/bin/bash
-python3 manage.py populate_db --delete_model PPI,PDI,Drug,Protein,Tissue
-python3 manage.py populate_db -p .
-python3 manage.py populate_db --data_dir . --exp_file gene_tissue_expression.gct
-python3 manage.py populate_db --data_dir . --drug_file drug-file.txt
-python3 manage.py populate_db -pp .
-python3 manage.py populate_db -pdr .
\ No newline at end of file
+python3 manage.py populate_db --delete_model PPI,PDI,Drug,Protein,Tissue,Disorder,PDiAssociations
+
+python3 manage.py populate_db --data_dir . -p protein-file.txt
+python3 manage.py populate_db --data_dir . -exp gene_tissue_expression.gct
+
+python3 manage.py populate_db --data_dir . -dr drug-file.txt
+python3 manage.py populate_db --data_dir . -pdr drug-protein-interaction.txt
+python3 manage.py populate_db -di ""
+python3 manage.py populate_db --data_dir . -pdi "" -ddi ""
+python3 manage.py populate_db -pp protein_protein_interaction_file.txt
\ No newline at end of file