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Cosy-Bio
Drugst.One
backend
Commits
2a456df7
Commit
2a456df7
authored
2 years ago
by
AndiMajore
Browse files
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Plain Diff
fixed file download group name issue
Former-commit-id:
1dc122c6
parent
4d3f856e
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No related merge requests found
Changes
1
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1 changed file
drugstone/views.py
+13
-9
13 additions, 9 deletions
drugstone/views.py
with
13 additions
and
9 deletions
drugstone/views.py
+
13
−
9
View file @
2a456df7
...
...
@@ -60,10 +60,6 @@ class TaskView(APIView):
parameters
=
request
.
data
[
'
parameters
'
]
licenced
=
parameters
.
get
(
'
licenced
'
,
False
)
print
(
models
.
PDIDataset
.
objects
.
all
())
print
(
get_ppi_ds
(
parameters
.
get
(
'
ppi_dataset
'
,
DEFAULTS
[
'
ppi
'
]),
licenced
))
print
(
get_pdi_ds
(
parameters
.
get
(
'
pdi_dataset
'
,
DEFAULTS
[
'
pdi
'
]),
licenced
))
# find databases based on parameter strings
parameters
[
'
ppi_dataset
'
]
=
PPIDatasetSerializer
().
to_representation
(
...
...
@@ -172,7 +168,6 @@ def map_nodes(request) -> Response:
# change data structure to dict in order to be quicker when merging
nodes_mapped_dict
=
{
id
.
upper
():
node
for
node
in
nodes_mapped
for
id
in
node
[
id_key
]}
print
(
nodes_mapped_dict
)
# merge fetched data with given data to avoid data loss
for
node
in
nodes
:
...
...
@@ -234,7 +229,7 @@ def create_network(request) -> Response:
def
latest_datasets
(
ds
):
dataset_dict
=
{}
for
d
in
ds
:
name
=
d
.
name
+
"
_
"
+
str
(
d
.
licenced
)
name
=
d
.
name
+
"
_
"
+
str
(
d
.
licenced
)
if
name
not
in
dataset_dict
:
dataset_dict
[
name
]
=
d
continue
...
...
@@ -293,7 +288,6 @@ def result_view(request) -> Response:
node_attributes
[
'
node_types
'
]
=
node_types
is_seed
=
node_attributes
.
get
(
'
is_seed
'
)
print
(
result
)
if
not
is_seed
:
is_seed
=
{}
node_attributes
[
'
is_seed
'
]
=
is_seed
...
...
@@ -480,9 +474,11 @@ def graph_export(request) -> Response:
Recieve whole graph data and write it to graphml file. Return the
file ready to download.
"""
remove_node_properties
=
[
'
color
'
,
'
shape
'
,
'
border_width
'
,
'
group
_name
'
,
'
border_width_selected
'
,
'
shadow
'
,
remove_node_properties
=
[
'
color
'
,
'
shape
'
,
'
border_width
'
,
'
group
'
,
'
border_width_selected
'
,
'
shadow
'
,
'
group_id
'
,
'
drugstone_type
'
,
'
font
'
,
'
x
'
,
'
y
'
]
remove_edge_properties
=
[
'
group_name
'
,
'
color
'
,
'
dashes
'
,
'
shadow
'
,
'
id
'
]
rename_node_properties
=
{
'
group_name
'
:
'
group
'
}
remove_edge_properties
=
[
'
group
'
,
'
color
'
,
'
dashes
'
,
'
shadow
'
,
'
id
'
]
rename_edge_properties
=
{
'
group_name
'
:
'
group
'
}
nodes
=
request
.
data
.
get
(
'
nodes
'
,
[])
edges
=
request
.
data
.
get
(
'
edges
'
,
[])
fmt
=
request
.
data
.
get
(
'
fmt
'
,
'
graphml
'
)
...
...
@@ -493,6 +489,10 @@ def graph_export(request) -> Response:
for
prop
in
remove_node_properties
:
if
prop
in
node
:
del
node
[
prop
]
for
k
,
v
in
rename_node_properties
.
items
():
if
k
in
node
:
node
[
v
]
=
node
[
k
]
del
node
[
k
]
for
key
in
list
(
node
.
keys
()):
if
isinstance
(
node
[
key
],
list
)
or
isinstance
(
node
[
key
],
dict
):
node
[
key
]
=
json
.
dumps
(
node
[
key
])
...
...
@@ -514,6 +514,10 @@ def graph_export(request) -> Response:
for
prop
in
remove_edge_properties
:
if
prop
in
e
:
del
e
[
prop
]
for
k
,
v
in
rename_edge_properties
.
items
():
if
k
in
e
:
e
[
v
]
=
e
[
k
]
del
e
[
k
]
for
key
in
e
:
if
isinstance
(
e
[
key
],
list
)
or
isinstance
(
e
[
key
],
dict
):
e
[
key
]
=
json
.
dumps
(
e
[
key
])
...
...
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