fixing backend routes

Former-commit-id: a37f5f815d0b80915d12a0ff68fd7e5847b246a2 [formerly 96dd8112ffbe332ac66f83a9aba11b48506bf7dc]
Former-commit-id: e827e385961c19295dd09db39c2733afdab015ae

drugstone/settings/celery_schedule.py

@@ -3,6 +3,7 @@ from celery.schedules import crontab
 CELERY_BEAT_SCHEDULE = {
     'update_db': {
         'task': 'drugstone.tasks.task_update_db_from_nedrex',
-        'schedule': crontab(day_of_week=1, hour=5, minute=0),
+        'schedule': crontab(day_of_week=1, hour=6, minute=0),
+        # 'schedule': crontab(minute='*/1'),
     },
 }

drugstone/urls.py

@@ -34,7 +34,7 @@ urlpatterns = [
     path('adjacent_drugs/', adjacent_drugs),
     path('adjacent_disorders/', adjacent_disorders),
     path('tissue_expression/', TissueExpressionView.as_view()),
-    path('tissue_max_expression/', get_max_tissue_expression()),
+    path('tissue_max_expression/', get_max_tissue_expression),
     path('tissues/', TissueView.as_view()),
     path('admin/', admin.site.urls),
     path('create_network', create_network),

drugstone/views.py

@@ -653,21 +653,30 @@ class TissueView(APIView):
         return Response(TissueSerializer(many=True).to_representation(tissues))
 
 
-
 class TissueExpressionView(APIView):
     """
     Expression of host proteins in tissues.
     """
 
+    def get(self, request) -> Response:
+        tissue = Tissue.objects.get(id=request.query_params.get('tissue'))
+        proteins = request.query_params.get('proteins')
+        token = request.query_params.get('token')
+        return self.get_tissue_expression(tissue, proteins, token)
+
     def post(self, request) -> Response:
         tissue = Tissue.objects.get(id=request.data.get('tissue'))
+        proteins = request.data.get('proteins')
+        token = request.data.get('token')
+        return self.get_tissue_expression(tissue, proteins, token)
 
-        if request.data.get('proteins'):
-            ids = json.loads(request.data.get('proteins'))
+    def get_tissue_expression(self, tissue, proteins, token):
+        if proteins is not None:
+            ids = json.loads(proteins)
             proteins = list(Protein.objects.filter(id__in=ids).all())
-        elif request.data.get('token'):
+        elif token is not None:
             proteins = []
-            task = Task.objects.get(token=request.data['token'])
+            task = Task.objects.get(token=token)
             result = task_result(task)
             network = result['network']
             node_attributes = result.get('node_attributes')

scripts/docker-entrypoint.sh

@@ -4,7 +4,7 @@ python3 manage.py makemigrations drugstone
 python3 manage.py migrate
 python3 manage.py createfixtures
 python3 manage.py cleanuptasks
-#python3 manage.py populate_db --update -a
+python3 manage.py populate_db --update -a
 python3 manage.py make_graphs
 
 /usr/bin/supervisord -c "/etc/supervisor/conf.d/supervisord.conf"