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Commit 3aba2228 authored by AndiMajore's avatar AndiMajore
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try to fix tissue expression route

Former-commit-id: aea16b28f5572fc40afa41bd0e347247780d1611 [formerly 9d06c8f9dcdbfb6fead6cd6b7a14f5bc0dbdee77]
Former-commit-id: 406f05ea57d69030a7659280633546ba612217e8
parent ac64a8ce
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......@@ -659,7 +659,51 @@ class TissueExpressionView(APIView):
"""
def get(self, request) -> Response:
return self.post(request)
tissue = Tissue.objects.get(id=request.query_params.get('tissue'))
if request.query_params.get('proteins'):
ids = json.loads(request.query_params.get('proteins'))
proteins = list(Protein.objects.filter(id__in=ids).all())
elif request.query_params.get('token'):
proteins = []
task = Task.objects.get(token=request.query_params['token'])
result = task_result(task)
network = result['network']
node_attributes = result.get('node_attributes')
if not node_attributes:
node_attributes = {}
node_types = node_attributes.get('node_types')
if not node_types:
node_types = {}
parameters = json.loads(task.parameters)
seeds = parameters['seeds']
nodes = network['nodes']
for node in nodes + seeds:
node_type = node_types.get(node)
details = None
if node_type == 'protein':
if details:
proteins.append(details)
else:
try:
prot = Protein.objects.get(uniprot_code=node)
if prot not in proteins:
proteins.append(Protein.objects.get(uniprot_code=node))
except Protein.DoesNotExist:
pass
pt_expressions = {}
for protein in proteins:
try:
expression_level = ExpressionLevel.objects.get(protein=protein, tissue=tissue)
pt_expressions[
ProteinSerializer().to_representation(protein)['drugstone_id']] = expression_level.expression_level
except ExpressionLevel.DoesNotExist:
pt_expressions[ProteinSerializer().to_representation(protein)['drugstone_id']] = None
return Response(pt_expressions)
def post(self, request) -> Response:
tissue = Tissue.objects.get(id=request.data.get('tissue'))
......
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