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Commit a71be208 authored by AndiMajore's avatar AndiMajore
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fixing backend routes

parent 733b561e
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......@@ -3,6 +3,7 @@ from celery.schedules import crontab
CELERY_BEAT_SCHEDULE = {
'update_db': {
'task': 'drugstone.tasks.task_update_db_from_nedrex',
'schedule': crontab(day_of_week=1, hour=5, minute=0),
'schedule': crontab(day_of_week=1, hour=6, minute=0),
# 'schedule': crontab(minute='*/1'),
},
}
......@@ -34,7 +34,7 @@ urlpatterns = [
path('adjacent_drugs/', adjacent_drugs),
path('adjacent_disorders/', adjacent_disorders),
path('tissue_expression/', TissueExpressionView.as_view()),
path('tissue_max_expression/', get_max_tissue_expression()),
path('tissue_max_expression/', get_max_tissue_expression),
path('tissues/', TissueView.as_view()),
path('admin/', admin.site.urls),
path('create_network', create_network),
......
......@@ -653,21 +653,30 @@ class TissueView(APIView):
return Response(TissueSerializer(many=True).to_representation(tissues))
class TissueExpressionView(APIView):
"""
Expression of host proteins in tissues.
"""
def get(self, request) -> Response:
tissue = Tissue.objects.get(id=request.query_params.get('tissue'))
proteins = request.query_params.get('proteins')
token = request.query_params.get('token')
return self.get_tissue_expression(tissue, proteins, token)
def post(self, request) -> Response:
tissue = Tissue.objects.get(id=request.data.get('tissue'))
proteins = request.data.get('proteins')
token = request.data.get('token')
return self.get_tissue_expression(tissue, proteins, token)
if request.data.get('proteins'):
ids = json.loads(request.data.get('proteins'))
def get_tissue_expression(self, tissue, proteins, token):
if proteins is not None:
ids = json.loads(proteins)
proteins = list(Protein.objects.filter(id__in=ids).all())
elif request.data.get('token'):
elif token is not None:
proteins = []
task = Task.objects.get(token=request.data['token'])
task = Task.objects.get(token=token)
result = task_result(task)
network = result['network']
node_attributes = result.get('node_attributes')
......
......@@ -4,7 +4,7 @@ python3 manage.py makemigrations drugstone
python3 manage.py migrate
python3 manage.py createfixtures
python3 manage.py cleanuptasks
#python3 manage.py populate_db --update -a
python3 manage.py populate_db --update -a
python3 manage.py make_graphs
/usr/bin/supervisord -c "/etc/supervisor/conf.d/supervisord.conf"
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